Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_M09
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g48310.1 68416.m05272 cytochrome P450 71A22, putative (CYP71A...    29   3.5  
At5g29000.2 68418.m03590 myb family transcription factor contain...    27   8.2  
At5g29000.1 68418.m03589 myb family transcription factor contain...    27   8.2  
At5g19610.1 68418.m02334 sec7 domain-containing protein similar ...    27   8.2  

>At3g48310.1 68416.m05272 cytochrome P450 71A22, putative (CYP71A22)
           Identical to Cytochrome P450 71A22
           (SP:Q9STL1)[Arabidopsis thaliana]
          Length = 490

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +3

Query: 135 RKPRRYTNSKAHXIMPLQLLYAGLIGQLTEKARNVVREMDSTNELTFL-RVRSRXHEILI 311
           R P R   S ++   PL LL  GL+  L   + +V R++  T +  F  R RS+  E + 
Sbjct: 50  RHPHRSLCSLSNRYGPLMLLRFGLVPVLVVSSADVARDILKTYDRVFASRPRSKIFEKIF 109

Query: 312 APDREFIL 335
              R+  L
Sbjct: 110 YEARDVAL 117


>At5g29000.2 68418.m03590 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 413

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -2

Query: 123 HHPFVGLDPLDRFFDLGGH 67
           HHP   +DPL  FFD   H
Sbjct: 112 HHPQEFIDPLHEFFDFSDH 130


>At5g29000.1 68418.m03589 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 370

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -2

Query: 123 HHPFVGLDPLDRFFDLGGH 67
           HHP   +DPL  FFD   H
Sbjct: 69  HHPQEFIDPLHEFFDFSDH 87


>At5g19610.1 68418.m02334 sec7 domain-containing protein similar to
            SP|Q42510 Pattern formation protein EMB30 (GNOM)
            {Arabidopsis thaliana}; contains Pfam profile PF01369:
            Sec7 domain
          Length = 1375

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/59 (28%), Positives = 32/59 (54%)
 Frame = +3

Query: 111  QRGDGCRHRKPRRYTNSKAHXIMPLQLLYAGLIGQLTEKARNVVREMDSTNELTFLRVR 287
            +R D C       Y ++K   ++P +LL   +IG + EK   V +E D   E+T+++++
Sbjct: 1303 RRMDTCMKADLGEYGDNKLQEVVP-ELLTT-MIGTMKEKEILVQKEDDDLWEITYIQIQ 1359


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,771,450
Number of Sequences: 28952
Number of extensions: 250066
Number of successful extensions: 530
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)