Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_M05
         (649 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.71 
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   1.6  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 10  FVICIFVDHFIYYFYATAFVF*IIHVIKL 96
           FV+ +F    IYYFY  AF+   +H++ L
Sbjct: 136 FVVPLFFLLCIYYFYC-AFIIFTVHLLFL 163



 Score = 23.4 bits (48), Expect = 1.6
 Identities = 6/30 (20%), Positives = 19/30 (63%)
 Frame = +1

Query: 7   IFVICIFVDHFIYYFYATAFVF*IIHVIKL 96
           + ++CI+  ++++  +  AF+   +H++ L
Sbjct: 253 LLLVCIYYFYYMHLLFCCAFIIFTMHLLFL 282


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 87  NKISEKKPIILSCDSIFPRNVFKLIPQQ 170
           +K+ + K ++   D + PR V  +IP+Q
Sbjct: 163 HKLKKMKYLVEVQDEVKPRGVLNIIPKQ 190


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,709
Number of Sequences: 336
Number of extensions: 2835
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)