Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_M05
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha...    94   1e-20
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    32   0.082
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc...    28   1.3  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    26   4.1  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    26   4.1  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    26   5.4  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   5.4  
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    25   7.1  
SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp...    25   9.4  

>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
           Caf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 94.3 bits (224), Expect = 1e-20
 Identities = 43/73 (58%), Positives = 50/73 (68%)
 Frame = +3

Query: 429 VQXYHWVXMDTEFPXVVARPIGEXRSTADYXYQLLRCNVDLLRIIQLGLTFMDENGKTPP 608
           ++ Y  V MDTEFP VVARP+G  +S+ DY YQ LR NVD L+IIQ+GL   DE G  P 
Sbjct: 41  IERYPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDSLKIIQIGLALSDEEGNAPV 100

Query: 609 AYTTWQFNFKFNL 647
              TWQFNF FNL
Sbjct: 101 EACTWQFNFTFNL 113


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 31.9 bits (69), Expect = 0.082
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = +3

Query: 429 VQXYHWVXMDTEFPXVVARPIGEXRSTADYXYQLLRCNVDLLRIIQLGLTF--MDENGKT 602
           V   H+V +D EF  ++       ++T    Y+LLR +     I+Q+G+TF  +  NGK+
Sbjct: 19  VDSAHYVSIDCEFSGLLRDFNLNNKNTLQDRYELLRKSSIRYTILQIGITFIYLQNNGKS 78


>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -2

Query: 78  DLKHKCSCIKIINKMIYENTDYENRL 1
           DL +K + +K+ ++ IY++TD E RL
Sbjct: 436 DLPNKLAKVKVSDRTIYKSTDAERRL 461


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 322 SCIVYPFPNEKNYLFFSTPW 263
           SC+VY FPN+ + L F   W
Sbjct: 58  SCLVYGFPNKVSALKFEWNW 77


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 235 VQNTQNKSKTTASKKTDNSSRLETDKRYKMPSA-SFGSISLPAGSDCGI 378
           ++NT N ++T AS+  +N ++ E+D  +   S+      SLP   +  I
Sbjct: 1   MRNTHNPNETEASEDAENDTQSESDLSFDHGSSEKLNRASLPKTQNSAI 49


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +3

Query: 90  KISEKKPIILSCDSIFPRNVFKLIPQQYSMFIDN 191
           + S   PI+ + + +   N+ +L+P+QYS  ++N
Sbjct: 814 RYSGMAPIVDADNKLRTENISELLPKQYSNILEN 847


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 111  IILSCDSIFPRNVFKLIPQQYSMFIDNLXWMF*KAXHW 224
            + +S  +IF  N+F L+ Q+    I  + WMF     W
Sbjct: 1218 LFISSPTIFVINIFILMNQERLNLISLITWMFSIGVFW 1255


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 280 FFSTPWFSIYFVY 242
           FF  PW  +YF+Y
Sbjct: 59  FFRNPWLDVYFMY 71


>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -1

Query: 397 CDSKHXLYHNHCPLEVIWNQNLRTASCIVYPFP 299
           C     L+   C  ++ W +NL +A   ++PFP
Sbjct: 248 CSVPSTLFSRDCE-QIFWLENLASAVFSLHPFP 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,512,680
Number of Sequences: 5004
Number of extensions: 46439
Number of successful extensions: 117
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)