SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_M05
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0126 + 14874739-14875581                                         79   3e-15
02_05_1070 + 33872845-33873726                                         78   5e-15
08_02_0807 + 21411799-21412665                                         76   3e-14
07_01_0499 - 3738959-3740068                                           52   5e-07
04_04_1644 + 35015849-35016838                                         46   2e-05
06_01_0276 + 2035763-2036770                                           44   1e-04
10_01_0149 + 1745355-1746230                                           42   6e-04
10_01_0124 - 1504521-1505303                                           42   6e-04
10_08_0041 - 14374684-14377339,14377371-14378233                       41   0.001
10_08_0038 - 14336633-14336864,14336970-14337187,14337302-14339020     34   0.11 
06_03_0342 + 19737951-19738772                                         31   0.60 
06_03_0183 + 17642639-17643428,17644507-17644949                       31   0.79 
10_08_0040 + 14360543-14361778,14361787-14362782,14362791-14363657     29   3.2  
08_02_0757 + 20840885-20841281,20842937-20843025,20843132-208432...    28   5.6  
04_04_1216 + 31811403-31812267,31813187-31813877,31813981-318141...    28   7.4  

>09_04_0126 + 14874739-14875581
          Length = 280

 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 41/89 (46%), Positives = 55/89 (61%), Gaps = 5/89 (5%)
 Frame = +3

Query: 387 LESQFA*XIPXNXTVQXYHWVXMDTEFPXVVARPIGEXRSTADYXYQLLRCNVDLLRIIQ 566
           LE++FA        V  + +V MDTEFP VV RP+G  +S AD+ Y  L+ NVD+L++IQ
Sbjct: 22  LEAEFA---VIREIVDDFPYVAMDTEFPGVVCRPLGTFKSNADFNYATLKANVDMLKLIQ 78

Query: 567 LGLTFMDENGKTPP-----AYTTWQFNFK 638
           LGLTF +E+G  P          WQFNF+
Sbjct: 79  LGLTFSNEHGGLPSLGPEGRPCVWQFNFR 107


>02_05_1070 + 33872845-33873726
          Length = 293

 Score = 78.2 bits (184), Expect = 5e-15
 Identities = 41/89 (46%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
 Frame = +3

Query: 387 LESQFA*XIPXNXTVQXYHWVXMDTEFPXVVARPIGEXRSTADYXYQLLRCNVDLLRIIQ 566
           LE +FA        V  + +V MDTEFP +V RP+G  RS ADY Y  L+ NVD+L +IQ
Sbjct: 38  LEEEFA---LIRDVVDEFPFVAMDTEFPGIVCRPVGAFRSPADYNYATLKANVDMLHLIQ 94

Query: 567 LGLTFMDENGKTPP-----AYTTWQFNFK 638
           LGLTF    G+ P          WQFNF+
Sbjct: 95  LGLTFSSPRGELPALGPGRRRCVWQFNFR 123


>08_02_0807 + 21411799-21412665
          Length = 288

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 36/75 (48%), Positives = 47/75 (62%), Gaps = 5/75 (6%)
 Frame = +3

Query: 429 VQXYHWVXMDTEFPXVVARPIGEXRSTADYXYQLLRCNVDLLRIIQLGLTFMDENGKTPP 608
           V  Y +V MDTEFP +V RP+G  R+T ++ Y  L  NV++L++IQLGLT  DE G  P 
Sbjct: 37  VDRYPYVAMDTEFPGIVCRPVGNFRTTDEFNYANLEANVNMLKLIQLGLTLSDEGGDLPR 96

Query: 609 AYT-----TWQFNFK 638
             T      WQFNF+
Sbjct: 97  RGTGGRRCIWQFNFR 111


>07_01_0499 - 3738959-3740068
          Length = 369

 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 29/69 (42%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
 Frame = +3

Query: 453 MDTEFPXVVARPIGEXRS-TADYXYQLLRCNVDLLRIIQLGLTFMDENGKTPPAYT---- 617
           +DTEFP  V RP     + T    Y LL+ NVD L ++QLGLT  D  G+ P   T    
Sbjct: 121 VDTEFPGTVHRPSAPAYTLTRKQKYALLKKNVDELHLVQLGLTLFDAGGRLPDLGTGGAA 180

Query: 618 --TWQFNFK 638
              W+FNF+
Sbjct: 181 RYVWEFNFR 189


>04_04_1644 + 35015849-35016838
          Length = 329

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +3

Query: 429 VQXYHWVXMDTEFPXVVARPIGEXRS-TADYXYQLLRCNVDLLRIIQLGLT 578
           +  + +V MDTEFP V+ RP       TA   Y LLR NVD L +IQ+G+T
Sbjct: 75  IDHFPYVSMDTEFPGVIHRPTKHPALLTAGDRYDLLRRNVDALHLIQVGIT 125


>06_01_0276 + 2035763-2036770
          Length = 335

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = +3

Query: 438 YHWVXMDTEFPXVVARPIGEXRS--TADYXYQLLRCNVDLLRIIQLGLTFMDENGKTPPA 611
           Y  V MDTEFP  V   +   R   T    Y +++ NVD L ++QLGL      G+ P A
Sbjct: 94  YPVVSMDTEFPGTV-HDVATPRHLRTPRESYAVVKRNVDELHLLQLGLALSGPAGRCPVA 152

Query: 612 YTTWQFNF 635
              WQFNF
Sbjct: 153 ---WQFNF 157


>10_01_0149 + 1745355-1746230
          Length = 291

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
 Frame = +3

Query: 438 YHWVXMDTEFPXVV-ARPIGEXRSTADYXYQLLRCNVDLLRIIQLGLTFMDENGKTPPAY 614
           + +V +DT+FP VV   P G    TAD  Y  +R N D L ++QLG+T    +G+ P   
Sbjct: 55  FPFVAVDTQFPGVVHPHPRGAG-VTADDRYAAVRANADELCLLQLGITLSAADGRLPVDG 113

Query: 615 TTWQFNFKFN 644
              +F + F+
Sbjct: 114 ALVEFMWDFD 123


>10_01_0124 - 1504521-1505303
          Length = 260

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +3

Query: 438 YHWVXMDTEFPXVVARP-IGEXRSTADYXYQLLRCNVDLLRIIQLGLTFMDENGKTP 605
           Y +V +D EF  VV  P     R T D  Y  L+ NVD +  +Q+G+T  D  G  P
Sbjct: 20  YPYVTIDVEFAGVVHHPPYTGSRPTPDEIYAALKSNVDEVPAVQIGITLSDAEGNLP 76


>10_08_0041 - 14374684-14377339,14377371-14378233
          Length = 1172

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
 Frame = +3

Query: 321 DAVRKFWFHI-TSSGQ*LWYKXCLESQFA*XIPXNXTVQXYHWVXMDTEFPXVVARPIGE 497
           D  +   +H+ T++ Q +W + C+E QF   +        + ++ +D EF    A  +  
Sbjct: 634 DGKQNLVYHLATATVQSVWRENCME-QFKLVLEALHQPHRHLYIAVDMEFAADAATNVSH 692

Query: 498 XRSTADYXYQLLRCNVDLLRIIQLGLT--FMDENGKTPPAYTTWQFNFKFNL 647
              T+   YQ +R  V+   I Q+GLT  F+ E  + P      + NF FN+
Sbjct: 693 RPVTSISCYQHMRRYVNGGGIFQMGLTFAFVGEGEQAPSPLIALEINFDFNV 744


>10_08_0038 - 14336633-14336864,14336970-14337187,14337302-14339020
          Length = 722

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
 Frame = +3

Query: 363 Q*LWYKXCLESQFA*XIPXNXTVQXYHWVXMDTEFPXVVARPIGEXRSTADYXYQLLRCN 542
           Q +W + C+E QF   +          ++ +D EF    A  +     T+   YQ +R  
Sbjct: 330 QSVWQENCME-QFKLVLEALHQPHRNLYIAVDMEFTADAATNMSHRPVTSTSCYQHVRRY 388

Query: 543 VDLLRIIQLGLTFM---DENGKTPPA-YTTWQFNFKFNL 647
           V+   I+Q+GLTF    D  G+  P+     + NF FN+
Sbjct: 389 VNGGDIVQMGLTFAFVGDVEGEQAPSPPIALEINFDFNV 427


>06_03_0342 + 19737951-19738772
          Length = 273

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +3

Query: 507 TADYXYQLLRCNVDLLRIIQLGLTFMDENGKTPPAYTTWQFNF-KFNL 647
           TA+  YQ++R N D L+ +QLGL     +G        W+FN  +F+L
Sbjct: 57  TAEERYQVVRANADELKPLQLGLAVRTADG----GRFAWEFNLNEFDL 100


>06_03_0183 + 17642639-17643428,17644507-17644949
          Length = 410

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 507 TADYXYQLLRCNVDLLRIIQLGLTFMDENG 596
           TA+  Y +L+ NVD LR IQ+GL     +G
Sbjct: 308 TAEQRYGVLKANVDALRAIQVGLAIRTGDG 337


>10_08_0040 + 14360543-14361778,14361787-14362782,14362791-14363657
          Length = 1032

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
 Frame = +3

Query: 444 WVXMDTEFPXVVARPIGEXRSTADYXYQLLRCNVDLLRIIQLGLTFM------DENGKTP 605
           ++ +D EF       I     T+   Y  LR  V+   I+Q+GLTF+        +  + 
Sbjct: 580 YIAVDMEFAADATTNIRRRPVTSTGCYHHLREFVNRGDIVQMGLTFVFVGDGEQSSSSSS 639

Query: 606 PAYTTWQFNFKFNL 647
           P   T + NFK N+
Sbjct: 640 PPPITLEINFKINI 653


>08_02_0757 +
           20840885-20841281,20842937-20843025,20843132-20843257,
           20843617-20844333,20844420-20844630,20844739-20845238,
           20845998-20846023,20846393-20846531,20846579-20846660,
           20846990-20847153
          Length = 816

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 244 TQNKSKTTASKKTDNSSRLETDKRYKMPSASFGSISL 354
           T+  S +  ++K    +  ETD +  +PSA+FGS SL
Sbjct: 346 TKGASSSDGAQKRKRDAFSETDPQQCVPSAAFGSDSL 382


>04_04_1216 +
           31811403-31812267,31813187-31813877,31813981-31814131,
           31814289-31814351,31814590-31814664,31814934-31815032
          Length = 647

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 271 SKKTDNSSRLETDKRYKMPSASFGSISLPAGSDCG 375
           S  TD  +  E  KRY+ P A   S+ + +GSD G
Sbjct: 44  SHLTDAGNGGEEQKRYEAPDAPSFSVGIDSGSDGG 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,871,556
Number of Sequences: 37544
Number of extensions: 256137
Number of successful extensions: 575
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -