Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_M05
         (649 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23743| Best HMM Match : No HMM Matches (HMM E-Value=.)             112   2e-25
SB_24818| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_10929| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.7  
SB_35733| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.058)          27   9.9  
SB_31654| Best HMM Match : Pox_F16 (HMM E-Value=5)                     27   9.9  
SB_4771| Best HMM Match : DEAD (HMM E-Value=0.015)                     27   9.9  

>SB_23743| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 745

 Score =  112 bits (270), Expect = 2e-25
 Identities = 53/87 (60%), Positives = 65/87 (74%)
 Frame = +3

Query: 387 LESQFA*XIPXNXTVQXYHWVXMDTEFPXVVARPIGEXRSTADYXYQLLRCNVDLLRIIQ 566
           LE +FA        +  Y +V MDTEFP VVARPIGE RSTA+Y +QLLRCNVDLL+IIQ
Sbjct: 17  LEEEFA---KIRNIIDEYPYVAMDTEFPGVVARPIGEFRSTAEYQFQLLRCNVDLLKIIQ 73

Query: 567 LGLTFMDENGKTPPAYTTWQFNFKFNL 647
           LG++F +++G+ P    TWQFNFKFNL
Sbjct: 74  LGMSFYNDHGQQPSDGATWQFNFKFNL 100


>SB_24818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 250 NKSKTTASKKTDNSSRLETDKRYKMPSASFGSISLPA 360
           +K+   A+K   +  R+ T +RYK+  A FGS  +P+
Sbjct: 32  SKTSKMAAKHRISRKRIITTERYKVGGAIFGSTQIPS 68


>SB_10929| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 636

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
 Frame = -1

Query: 397 CDSKHXLYHNHC---PLEVIWNQNLRTAS--CIVYPFPNEKNYLFFSTPWFS 257
           CDS    YH  C   P EV    N    S  C     PN  + LF S+P FS
Sbjct: 111 CDSCDKWYHVRCMDMPTEVYQGLNNSCTSWICCTCGLPNFSSSLFKSSPMFS 162


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/57 (22%), Positives = 23/57 (40%)
 Frame = +1

Query: 202  CFKRPXTGA*FVQNTQNKSKTTASKKTDNSSRLETDKRYKMPSASFGSISLPAGSDC 372
            C+  P       +N     +TT+ +  DN     + ++ + PS+     S P  S C
Sbjct: 886  CYAIPSGRVSLTKNAPKSVQTTSKRPQDNLKNFPSPRKTRTPSSHQSPQSAPPSSPC 942


>SB_35733| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.058)
          Length = 448

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 118 YHVTQYFHEMYSN*YHSNIQCSLITC 195
           YH TQY+H  Y+N  H+ +    I C
Sbjct: 331 YHTTQYYH--YTNMSHNTVSYHTIPC 354


>SB_31654| Best HMM Match : Pox_F16 (HMM E-Value=5)
          Length = 256

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +1

Query: 235 VQNTQNKSKTTASKKTDN 288
           V N QNK+KTT S+K+D+
Sbjct: 80  VLNIQNKNKTTVSRKSDS 97


>SB_4771| Best HMM Match : DEAD (HMM E-Value=0.015)
          Length = 592

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +1

Query: 235 VQNTQNKSKTTASKKTDN 288
           V N QNK+KTT S+K+D+
Sbjct: 419 VLNIQNKNKTTVSRKSDS 436


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,087,212
Number of Sequences: 59808
Number of extensions: 329142
Number of successful extensions: 733
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)