Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_M05
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21854-1|AAA87454.1|  310|Caenorhabditis elegans cCAF1 protein p...    85   3e-17
AL132860-28|CAB60501.1|  310|Caenorhabditis elegans Hypothetical...    85   3e-17
Z98851-1|CAB11539.2|  327|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U41272-9|AAA82452.4| 1256|Caenorhabditis elegans Prion-like-(q/n...    29   3.8  
Z74474-1|CAA98954.2|  566|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AF038618-2|AAB92072.1|  487|Caenorhabditis elegans Hypothetical ...    27   8.7  

>U21854-1|AAA87454.1|  310|Caenorhabditis elegans cCAF1 protein
           protein.
          Length = 310

 Score = 85.4 bits (202), Expect = 3e-17
 Identities = 35/72 (48%), Positives = 50/72 (69%)
 Frame = +3

Query: 429 VQXYHWVXMDTEFPXVVARPIGEXRSTADYXYQLLRCNVDLLRIIQLGLTFMDENGKTPP 608
           V+ Y +V MDTEFP VVA P+G  RS  D+ YQ + CNV++L++IQ+G   +++ G+ PP
Sbjct: 42  VEDYPYVAMDTEFPGVVATPLGTFRSKEDFNYQQVFCNVNMLKLIQVGFAMVNDKGELPP 101

Query: 609 AYTTWQFNFKFN 644
               WQFNF F+
Sbjct: 102 TGDVWQFNFNFS 113


>AL132860-28|CAB60501.1|  310|Caenorhabditis elegans Hypothetical
           protein Y56A3A.20 protein.
          Length = 310

 Score = 85.4 bits (202), Expect = 3e-17
 Identities = 35/72 (48%), Positives = 50/72 (69%)
 Frame = +3

Query: 429 VQXYHWVXMDTEFPXVVARPIGEXRSTADYXYQLLRCNVDLLRIIQLGLTFMDENGKTPP 608
           V+ Y +V MDTEFP VVA P+G  RS  D+ YQ + CNV++L++IQ+G   +++ G+ PP
Sbjct: 42  VEDYPYVAMDTEFPGVVATPLGTFRSKEDFNYQQVFCNVNMLKLIQVGFAMVNDKGELPP 101

Query: 609 AYTTWQFNFKFN 644
               WQFNF F+
Sbjct: 102 TGDVWQFNFNFS 113


>Z98851-1|CAB11539.2|  327|Caenorhabditis elegans Hypothetical
           protein H12I19.1 protein.
          Length = 327

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +1

Query: 4   SIFVICIFVDHFIYYFYATAFVF*IIHVIKLAKKNL*FYHVTQYFHEMYSN 156
           S+  + IF+  F++Y     F   +  V K   KN   + +T +F EM  N
Sbjct: 24  SVLYVLIFIILFLFYILVFPFYVYVNKVNKERDKNAFVFPITNHFFEMTKN 74


>U41272-9|AAA82452.4| 1256|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 62
           protein.
          Length = 1256

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +1

Query: 232 FVQNTQNKSKTTASKKTDNSSRLETDKRYKMPSASFGSISLPAGSDCG 375
           F  N QN+S     +  +NSS  +     K P  S  S  L +G   G
Sbjct: 160 FQANLQNRSNRVMQQTPNNSSNHQNHLSLKQPHLSMNSTQLQSGFQTG 207


>Z74474-1|CAA98954.2|  566|Caenorhabditis elegans Hypothetical
           protein K10C8.1 protein.
          Length = 566

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +3

Query: 444 WVXMDTEFPXVVARPIGEXRSTADYXYQLLRCNVDLLRIIQLGLTFMDE 590
           +V +D EF  +    I     T +  YQ+LR NV   R  QLGLT   +
Sbjct: 25  FVAIDFEFLGLDVSAIS-LHDTVESRYQILRDNVIKYRPCQLGLTLFKQ 72


>AF038618-2|AAB92072.1|  487|Caenorhabditis elegans Hypothetical
           protein F42G8.8 protein.
          Length = 487

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 643 LNLKLNCQVV*AGGVFPFSSMKV 575
           LN+KLNCQV   G +   S++KV
Sbjct: 412 LNVKLNCQVYIGGSIHTESNVKV 434


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,770,561
Number of Sequences: 27780
Number of extensions: 259493
Number of successful extensions: 571
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)