Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_M05
         (649 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    25   0.83 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.83 
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          22   5.9  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   7.8  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   7.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   7.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   7.8  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   7.8  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = -3

Query: 458 IHXYPMIXLDCXIXWNXSCKL*FQTXFIPQSLPAG---SDMEPKLADGILYRLSVS 300
           I  Y    LD  + W  +     +   +PQ    G   +D + KLA GI  RLS+S
Sbjct: 179 IESYGYTVLDVVMYWKETPVRGVEEAELPQFTIIGYETNDRKEKLATGIYQRLSLS 234


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 392 FQTXFIPQSLPAGSDMEPKLADGILYRLSVSKREELSVFFDAV 264
           FQ   +  SL   ++  PKLA  +LY++ ++  E   V   AV
Sbjct: 662 FQRTLMVGSLGKLTETNPKLARSVLYKIYLNTMESHEVRCTAV 704


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/26 (30%), Positives = 11/26 (42%)
 Frame = +2

Query: 422 SXSPKXSLGXYGYRISXSSCTTNWRI 499
           S  P    G YG      SC+ +W +
Sbjct: 30  SLPPLFGWGSYGPEAGNVSCSVSWEV 55


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -3

Query: 638 FKVELPSCISRW 603
           FK+ LP+C  +W
Sbjct: 359 FKLMLPNCCGKW 370


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +3

Query: 69  VLNHSCNKISEKKPIILSCDSIFPRNV 149
           V+N++C  +    P   + DS F  +V
Sbjct: 442 VINYNCRSLVASVPFFANADSNFVSDV 468


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +3

Query: 69  VLNHSCNKISEKKPIILSCDSIFPRNV 149
           V+N++C  +    P   + DS F  +V
Sbjct: 410 VINYNCRSLVASVPFFANADSNFVSDV 436


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +3

Query: 63  ICVLNHSCNKISEKKPIILSCDSIFPRNV 149
           IC L+HS   ++    +IL C+ +   ++
Sbjct: 225 ICKLSHSNASVAGGMEMILLCEKVAKEDI 253


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +3

Query: 63  ICVLNHSCNKISEKKPIILSCDSIFPRNV 149
           IC L+HS   ++    +IL C+ +   ++
Sbjct: 225 ICKLSHSNASVAGGMEMILLCEKVAKEDI 253


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,949
Number of Sequences: 438
Number of extensions: 2975
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)