Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_M05
(649 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g80780.2 68414.m09478 CCR4-NOT transcription complex protein,... 83 1e-16
At1g80780.1 68414.m09477 CCR4-NOT transcription complex protein,... 83 1e-16
At2g32070.1 68415.m03919 CCR4-NOT transcription complex protein,... 80 1e-15
At5g10960.1 68418.m01273 CCR4-NOT transcription complex protein,... 76 2e-14
At1g15920.2 68414.m01910 CCR4-NOT transcription complex protein,... 59 2e-09
At1g15920.1 68414.m01909 CCR4-NOT transcription complex protein,... 59 2e-09
At5g22250.1 68418.m02591 CCR4-NOT transcription complex protein,... 55 4e-08
At3g44260.1 68416.m04750 CCR4-NOT transcription complex protein,... 54 1e-07
At3g44240.1 68416.m04747 CCR4-NOT transcription complex protein,... 43 2e-04
At1g27890.1 68414.m03417 CCR4-NOT transcription complex protein,... 36 0.031
At1g27820.1 68414.m03409 CCR4-NOT transcription complex protein,... 33 0.16
At1g61470.1 68414.m06926 CCR4-NOT transcription complex protein,... 30 1.5
At4g27240.1 68417.m03911 zinc finger (C2H2 type) family protein ... 27 8.1
At3g49280.1 68416.m05386 hypothetical protein 27 8.1
>At1g80780.2 68414.m09478 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 274
Score = 83.4 bits (197), Expect = 1e-16
Identities = 37/74 (50%), Positives = 50/74 (67%), Gaps = 4/74 (5%)
Frame = +3
Query: 429 VQXYHWVXMDTEFPXVVARPIGEXRSTADYXYQLLRCNVDLLRIIQLGLTFMDENGKTPP 608
V + +V MDTEFP +V RP+G +S ADY Y+ L+ NV++L++IQLGLTF +E G P
Sbjct: 31 VDDFPYVAMDTEFPGIVVRPVGTFKSNADYHYETLKTNVNILKMIQLGLTFSNEQGNLPT 90
Query: 609 A----YTTWQFNFK 638
Y WQFNF+
Sbjct: 91 CGTDKYCIWQFNFR 104
>At1g80780.1 68414.m09477 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 274
Score = 83.4 bits (197), Expect = 1e-16
Identities = 37/74 (50%), Positives = 50/74 (67%), Gaps = 4/74 (5%)
Frame = +3
Query: 429 VQXYHWVXMDTEFPXVVARPIGEXRSTADYXYQLLRCNVDLLRIIQLGLTFMDENGKTPP 608
V + +V MDTEFP +V RP+G +S ADY Y+ L+ NV++L++IQLGLTF +E G P
Sbjct: 31 VDDFPYVAMDTEFPGIVVRPVGTFKSNADYHYETLKTNVNILKMIQLGLTFSNEQGNLPT 90
Query: 609 A----YTTWQFNFK 638
Y WQFNF+
Sbjct: 91 CGTDKYCIWQFNFR 104
>At2g32070.1 68415.m03919 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 275
Score = 79.8 bits (188), Expect = 1e-15
Identities = 35/75 (46%), Positives = 49/75 (65%), Gaps = 5/75 (6%)
Frame = +3
Query: 429 VQXYHWVXMDTEFPXVVARPIGEXRSTADYXYQLLRCNVDLLRIIQLGLTFMDENGKTPP 608
V + +V MDTEFP +V RP+G ++ +Y Y+ L+ NV++L++IQLGLTF DE G P
Sbjct: 31 VDDFPFVAMDTEFPGIVCRPVGTFKTNTEYHYETLKTNVNILKMIQLGLTFSDEKGNLPT 90
Query: 609 A-----YTTWQFNFK 638
Y WQFNF+
Sbjct: 91 CGTDNKYCIWQFNFR 105
>At5g10960.1 68418.m01273 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q9UFF9 CCR4-NOT
transcription complex, subunit 8 (CAF1-like protein,
CALIFp) [Homo sapiens]
Length = 277
Score = 76.2 bits (179), Expect = 2e-14
Identities = 36/78 (46%), Positives = 50/78 (64%), Gaps = 5/78 (6%)
Frame = +3
Query: 429 VQXYHWVXMDTEFPXVVARPIGEXRSTADYXYQLLRCNVDLLRIIQLGLTFMDENGKTPP 608
V + ++ MDTEFP VV +P+ + D Y+ L+ NVDLL++IQ+GLTF DENG P
Sbjct: 31 VDKFSYIAMDTEFPGVVLKPVATFKYNNDLNYRTLKENVDLLKLIQVGLTFSDENGNLPT 90
Query: 609 A----YTTWQFNFK-FNL 647
+ WQFNF+ FN+
Sbjct: 91 CGTDKFCIWQFNFREFNI 108
>At1g15920.2 68414.m01910 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 286
Score = 59.3 bits (137), Expect = 2e-09
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 11/85 (12%)
Frame = +3
Query: 426 TVQXYHWVXMDTEFPXVVARPIGEXRSTA------DYXYQLLRCNVDLLRIIQLGLTFMD 587
++ + +V MDTEFP +V + + + +Y Y L+ NV++L++IQLGLT D
Sbjct: 34 SIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYNYDTLKANVNMLKLIQLGLTLSD 93
Query: 588 ENGKTPPAYTT----WQFNFK-FNL 647
E G P T WQFNF+ FN+
Sbjct: 94 EKGNLPTCGTNKQCIWQFNFREFNV 118
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 376 IKXVWNHNLHEXFXIIXQS 432
I+ VWNHNL + +I QS
Sbjct: 16 IREVWNHNLEQEMALIEQS 34
>At1g15920.1 68414.m01909 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 286
Score = 59.3 bits (137), Expect = 2e-09
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 11/85 (12%)
Frame = +3
Query: 426 TVQXYHWVXMDTEFPXVVARPIGEXRSTA------DYXYQLLRCNVDLLRIIQLGLTFMD 587
++ + +V MDTEFP +V + + + +Y Y L+ NV++L++IQLGLT D
Sbjct: 34 SIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYNYDTLKANVNMLKLIQLGLTLSD 93
Query: 588 ENGKTPPAYTT----WQFNFK-FNL 647
E G P T WQFNF+ FN+
Sbjct: 94 EKGNLPTCGTNKQCIWQFNFREFNV 118
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 376 IKXVWNHNLHEXFXIIXQS 432
I+ VWNHNL + +I QS
Sbjct: 16 IREVWNHNLEQEMALIEQS 34
>At5g22250.1 68418.m02591 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 278
Score = 55.2 bits (127), Expect = 4e-08
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 8/78 (10%)
Frame = +3
Query: 429 VQXYHWVXMDTEFPXVVARPIGEX--RSTADYXYQLLRCNVDLLRIIQLGLTFMDENGKT 602
V+ Y ++ MDTEFP V+ + + R +Y Y LL+ NVD L +IQ+GLT D +G
Sbjct: 33 VEDYPFISMDTEFPGVIYKADLDVLRRGNPNYLYNLLKSNVDALSLIQVGLTLSDADGNL 92
Query: 603 PP------AYTTWQFNFK 638
P W+FNF+
Sbjct: 93 PDLGGQKNRRYIWEFNFR 110
>At3g44260.1 68416.m04750 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q9UFF9 CCR4-NOT
transcription complex, subunit 8 (CAF1-like protein,
CALIFp) [Homo sapiens]
Length = 280
Score = 53.6 bits (123), Expect = 1e-07
Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Frame = +3
Query: 429 VQXYHWVXMDTEFPXVVARPIGEXRST-ADYXYQLLRCNVDLLRIIQLGLTFMDENGKTP 605
+ Y ++ MDTEFP V+ + + R T D Y LL+ NVD L +IQ+GLT D NG P
Sbjct: 38 IDDYPFISMDTEFPGVIFK--SDLRFTNPDDLYTLLKANVDALSLIQVGLTLSDVNGNLP 95
Query: 606 PAYT------TWQFNFK 638
W+FNF+
Sbjct: 96 DLGDDLHRGFIWEFNFR 112
>At3g44240.1 68416.m04747 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 239
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/69 (33%), Positives = 37/69 (53%)
Frame = +3
Query: 429 VQXYHWVXMDTEFPXVVARPIGEXRSTADYXYQLLRCNVDLLRIIQLGLTFMDENGKTPP 608
++ Y ++ +DTEFP + +T + Y + +VD ++IQLGLT D NG+
Sbjct: 8 LRSYRFIAIDTEFPSTLRETT--QHATDEERYMDMSFSVDRAKLIQLGLTLFDINGRIG- 64
Query: 609 AYTTWQFNF 635
TW+ NF
Sbjct: 65 --GTWEINF 71
>At1g27890.1 68414.m03417 CCR4-NOT transcription complex protein,
putative contains similarity to SWISS-PROT:Q9UFF9
CCR4-NOT transcription complex, subunit 8 (CAF1-like
protein, CALIFp) [Human]
Length = 302
Score = 35.5 bits (78), Expect = 0.031
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +3
Query: 447 VXMDTEFPXVVARPIGEXRSTADYXYQLLRCNVDLLRIIQLGLTFMDENGKTPPAYTTWQ 626
+ +DTEFP + + ++ + Y+ ++ NVD +IQLG T D G T TW+
Sbjct: 26 IAIDTEFPGCLKETPMD--ASEEIRYRDMKFNVDNTHLIQLGFTLFDRRGIT----KTWE 79
Query: 627 FNFK-FN 644
N FN
Sbjct: 80 INLSDFN 86
>At1g27820.1 68414.m03409 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q9UFF9 CCR4-NOT
transcription complex, subunit 8 (CAF1-like protein,
CALIFp) [Homo sapiens]
Length = 310
Score = 33.1 bits (72), Expect = 0.16
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +3
Query: 447 VXMDTEFPXVVARPIGEXRSTADYXYQLLRCNVDLLRIIQLGLTFMDENGKTPPAYTTWQ 626
+ +DTEFP + + ++ + Y+ ++ NVD +IQLG T D G TW+
Sbjct: 31 IAIDTEFPGCLKETPMD--ASEEIRYRDMKFNVDNTHLIQLGFTLFDRRGFA----KTWE 84
Query: 627 FN 632
N
Sbjct: 85 IN 86
>At1g61470.1 68414.m06926 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 278
Score = 29.9 bits (64), Expect = 1.5
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +3
Query: 447 VXMDTEFPXVVARPIGEXRSTADYXYQLLRCNVDLLRIIQLGLTFMDENGKTPPAYTTWQ 626
+ +DTEFP + + ++ + Y+ ++ NVD +IQLGLT + G T TW+
Sbjct: 27 IAIDTEFPGCLKETPMD--ASDEIRYRDMKFNVDNTHLIQLGLTLFGK-GIT----KTWE 79
Query: 627 FNFK-FN 644
N FN
Sbjct: 80 INLSDFN 86
>At4g27240.1 68417.m03911 zinc finger (C2H2 type) family protein
contains zinc finger, C2H2 type, domain, PROSITE:PS00028
Length = 431
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +1
Query: 235 VQNTQNKSKTTASKKTDNSSRLETDKRYKMPSASFG-SISLPAGSD 369
++ + +S+ KKT +T K+ K+PS F SLP SD
Sbjct: 1 MEASSTRSEKKKKKKTIQRENTDTQKKKKLPSVWFSLKKSLPCKSD 46
>At3g49280.1 68416.m05386 hypothetical protein
Length = 176
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -1
Query: 346 WNQNLRTASCIVYPFPNE-KNYLFFSTPW 263
WN+N+ T SC++ +P E + +LFF P+
Sbjct: 63 WNKNVGT-SCLLCNYPLETREHLFFQCPY 90
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,638,105
Number of Sequences: 28952
Number of extensions: 226457
Number of successful extensions: 504
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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