Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_M03
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    25   0.75 
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    25   0.75 
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   3.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   7.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   7.0  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   9.2  

>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 88  SIRTLSLADEMFSDTYKMKLVDEVI 162
           S+ T + A+E++SD Y    +DE++
Sbjct: 12  SLLTWTYAEELYSDKYDYVNIDEIL 36


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 88  SIRTLSLADEMFSDTYKMKLVDEVI 162
           S+ T + A+E++SD Y    +DE++
Sbjct: 12  SLLTWTYAEELYSDKYDYVNIDEIL 36


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -3

Query: 538 KVXIFH-HGNHAITIHRLPSKELK 470
           K+ +F  H N  IT++R P  + K
Sbjct: 151 KIHVFSLHDNKLITMYRFPQNQFK 174


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -2

Query: 116 SSASDNVLIDLHFDGLEAIKNNKNRKNGFSPQQLNRE 6
           +SAS+  +  +    L  +      +N F+ Q+L+RE
Sbjct: 611 ASASEESVHSMELRTLPCLLPRPKSENNFASQELSRE 647


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -2

Query: 116 SSASDNVLIDLHFDGLEAIKNNKNRKNGFSPQQLNRE 6
           +SAS+  +  +    L  +      +N F+ Q+L+RE
Sbjct: 579 ASASEESVHSMELRTLPCLLPRPKSENNFASQELSRE 615


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 242 ADEGTDSAVESG-VDIVLNHRLVETYAFGDK 331
           +DE   +A++SG  +  +N+ L++T  +GDK
Sbjct: 44  SDEKRQAAIQSGDYNYTMNY-LLDTDQWGDK 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,357
Number of Sequences: 438
Number of extensions: 3012
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)