BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P02_F_M03 (600 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g16640.1 68416.m02127 translationally controlled tumor family... 62 4e-10 At3g05540.1 68416.m00607 translationally controlled tumor family... 57 8e-09 At4g29060.1 68417.m04157 elongation factor Ts family protein sim... 28 4.1 At5g49030.1 68418.m06067 tRNA synthetase class I (I, L, M and V)... 27 7.2 >At3g16640.1 68416.m02127 translationally controlled tumor family protein similar to translationally controlled tumor protein GB:AAD10032 from [Hevea brasiliensis] Length = 168 Score = 61.7 bits (143), Expect = 4e-10 Identities = 47/140 (33%), Positives = 62/140 (44%), Gaps = 2/140 (1%) Frame = +2 Query: 182 W*REHRADIXIEGFNPSAEEA--DEGTDSAVESGVDIVLNHRLVETYAFGDKKSYTXXXX 355 W D+ I G NPSAEE DEG D + + VDIV RL E + DKK + Sbjct: 35 WVTVGAVDVNI-GANPSAEEGGEDEGVDDSTQKVVDIVDTFRLQEQPTY-DKKGFIAYIK 92 Query: 356 XXXXXXXXXXEXKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCDGMVAMMEYXD 535 + DQ VFK + K +L R + QFF GE M D + Y Sbjct: 93 KYIKLLTPKLSEE--DQA-VFKKGIEGATKFLLPRLSDFQFFVGEGMHDDSTLVFAYYK- 148 Query: 536 FDGTQIPIMMFFKHGLQXEK 595 +G+ P ++F HGL+ K Sbjct: 149 -EGSTNPTFLYFAHGLKEVK 167 >At3g05540.1 68416.m00607 translationally controlled tumor family protein similar to translationally controlled tumor protein GB:AAD10032 from [Hevea brasiliensis] Length = 156 Score = 57.2 bits (132), Expect = 8e-09 Identities = 40/131 (30%), Positives = 61/131 (46%), Gaps = 3/131 (2%) Frame = +2 Query: 212 IEGFNPSAEEA--DEGTDSAVESGVDIVLNHRLVETYAFGDKKSYTXXXXXXXXXXXXXX 385 +EG NPS EE DEG D VDI+ RL E +F DKK + Sbjct: 31 VEGKNPSGEEGGEDEGVDDQAVKVVDIIDTFRLQEQPSF-DKKQFVMFMKRYIKQLSPKL 89 Query: 386 EXKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDC-DGMVAMMEYXDFDGTQIPIM 562 + + E+FK ++ K ++ + K+ QFF GESM+ +G + Y +G P Sbjct: 90 DS---ENQELFKKHIESATKFLMSKLKDFQFFVGESMEGEEGSLVFAYYR--EGATDPTF 144 Query: 563 MFFKHGLQXEK 595 ++ +GL+ K Sbjct: 145 LYLAYGLKEIK 155 >At4g29060.1 68417.m04157 elongation factor Ts family protein similar to SP|P35019 Elongation factor Ts (EF-Ts) {Galdieria sulphuraria}; contains Pfam profiles PF00627: UBA/TS-N domain, PF00889: Elongation factor TS, PF00575: S1 RNA binding domain Length = 953 Score = 28.3 bits (60), Expect = 4.1 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = +2 Query: 215 EGFNPSAEEADEGTDSAVESG 277 EGF P+AEEAD+G S + G Sbjct: 272 EGFLPTAEEADDGIGSMMMGG 292 >At5g49030.1 68418.m06067 tRNA synthetase class I (I, L, M and V) family protein similar to SP|P41972 Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA ligase) (IleRS) {Staphylococcus aureus}; contains Pfam profile PF00133: tRNA synthetases class I (I, L, M and V) Length = 1093 Score = 27.5 bits (58), Expect = 7.2 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 3/31 (9%) Frame = +2 Query: 428 MNKVMKDILGRFKELQFFTGE---SMDCDGM 511 +NK++KDI+ R+K LQ + + DC G+ Sbjct: 167 LNKILKDIINRYKLLQNYKVQYVPGWDCHGL 197 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,622,462 Number of Sequences: 28952 Number of extensions: 209642 Number of successful extensions: 521 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 511 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 518 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1187288784 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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