Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_M03
         (600 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16640.1 68416.m02127 translationally controlled tumor family...    62   4e-10
At3g05540.1 68416.m00607 translationally controlled tumor family...    57   8e-09
At4g29060.1 68417.m04157 elongation factor Ts family protein sim...    28   4.1  
At5g49030.1 68418.m06067 tRNA synthetase class I (I, L, M and V)...    27   7.2  

>At3g16640.1 68416.m02127 translationally controlled tumor family
           protein similar to translationally controlled tumor
           protein GB:AAD10032 from [Hevea brasiliensis]
          Length = 168

 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 47/140 (33%), Positives = 62/140 (44%), Gaps = 2/140 (1%)
 Frame = +2

Query: 182 W*REHRADIXIEGFNPSAEEA--DEGTDSAVESGVDIVLNHRLVETYAFGDKKSYTXXXX 355
           W      D+ I G NPSAEE   DEG D + +  VDIV   RL E   + DKK +     
Sbjct: 35  WVTVGAVDVNI-GANPSAEEGGEDEGVDDSTQKVVDIVDTFRLQEQPTY-DKKGFIAYIK 92

Query: 356 XXXXXXXXXXEXKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCDGMVAMMEYXD 535
                       +  DQ  VFK  +    K +L R  + QFF GE M  D  +    Y  
Sbjct: 93  KYIKLLTPKLSEE--DQA-VFKKGIEGATKFLLPRLSDFQFFVGEGMHDDSTLVFAYYK- 148

Query: 536 FDGTQIPIMMFFKHGLQXEK 595
            +G+  P  ++F HGL+  K
Sbjct: 149 -EGSTNPTFLYFAHGLKEVK 167


>At3g05540.1 68416.m00607 translationally controlled tumor family
           protein similar to translationally controlled tumor
           protein GB:AAD10032 from [Hevea brasiliensis]
          Length = 156

 Score = 57.2 bits (132), Expect = 8e-09
 Identities = 40/131 (30%), Positives = 61/131 (46%), Gaps = 3/131 (2%)
 Frame = +2

Query: 212 IEGFNPSAEEA--DEGTDSAVESGVDIVLNHRLVETYAFGDKKSYTXXXXXXXXXXXXXX 385
           +EG NPS EE   DEG D      VDI+   RL E  +F DKK +               
Sbjct: 31  VEGKNPSGEEGGEDEGVDDQAVKVVDIIDTFRLQEQPSF-DKKQFVMFMKRYIKQLSPKL 89

Query: 386 EXKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDC-DGMVAMMEYXDFDGTQIPIM 562
           +    +  E+FK ++    K ++ + K+ QFF GESM+  +G +    Y   +G   P  
Sbjct: 90  DS---ENQELFKKHIESATKFLMSKLKDFQFFVGESMEGEEGSLVFAYYR--EGATDPTF 144

Query: 563 MFFKHGLQXEK 595
           ++  +GL+  K
Sbjct: 145 LYLAYGLKEIK 155


>At4g29060.1 68417.m04157 elongation factor Ts family protein
           similar to SP|P35019 Elongation factor Ts (EF-Ts)
           {Galdieria sulphuraria}; contains Pfam profiles PF00627:
           UBA/TS-N domain, PF00889: Elongation factor TS, PF00575:
           S1 RNA binding domain
          Length = 953

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 215 EGFNPSAEEADEGTDSAVESG 277
           EGF P+AEEAD+G  S +  G
Sbjct: 272 EGFLPTAEEADDGIGSMMMGG 292


>At5g49030.1 68418.m06067 tRNA synthetase class I (I, L, M and V)
           family protein similar to SP|P41972 Isoleucyl-tRNA
           synthetase (EC 6.1.1.5) (Isoleucine--tRNA ligase)
           (IleRS) {Staphylococcus aureus}; contains Pfam profile
           PF00133: tRNA synthetases class I (I, L, M and V)
          Length = 1093

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +2

Query: 428 MNKVMKDILGRFKELQFFTGE---SMDCDGM 511
           +NK++KDI+ R+K LQ +  +     DC G+
Sbjct: 167 LNKILKDIINRYKLLQNYKVQYVPGWDCHGL 197


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,622,462
Number of Sequences: 28952
Number of extensions: 209642
Number of successful extensions: 521
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)