Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_L18
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc... 204 9e-54
SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe... 29 0.58
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 28 1.0
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 26 4.1
SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces pomb... 26 5.4
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S... 25 7.2
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 25 7.2
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce... 25 9.5
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 25 9.5
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 9.5
>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 192
Score = 204 bits (498), Expect = 9e-54
Identities = 95/150 (63%), Positives = 119/150 (79%), Gaps = 1/150 (0%)
Frame = +3
Query: 204 KVQKPAPDFSATAVVNGEFNQLKLSDFTGKYVVLFFYPLDFTFVCPTELIXFSDKAKDFA 383
++ KPAPDF TAVVNG F ++KL+D+ GK+V L FYPLDFTFVCPTE++ FS+ A FA
Sbjct: 4 QIGKPAPDFKGTAVVNGAFEEIKLADYKGKWVFLGFYPLDFTFVCPTEIVAFSEAASKFA 63
Query: 384 GIDCQVIGVSTDSEFSHLAWINTPRKDGGLGKMEIPLLADYKKQISKDYDVLLDD-GFAL 560
+ QVI STDSE+SHLA+INTPRK+GGLG + IPLLAD ++S+DY VL++D G A
Sbjct: 64 ERNAQVILTSTDSEYSHLAFINTPRKEGGLGGINIPLLADPSHKVSRDYGVLIEDAGVAF 123
Query: 561 RGLFIIDRNGTLRHMSVNDLPVGRSVDETL 650
RGLF+ID G LR +++NDLPVGRSVDE L
Sbjct: 124 RGLFLIDPKGVLRQITINDLPVGRSVDEAL 153
>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 195
Score = 29.1 bits (62), Expect = 0.58
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +3
Query: 267 LKLSDFTG-KYVVLFFYPLDFTFVCPTELIXFSDKAKDFAGIDCQVIGVSTDSEFSHLAW 443
++L D T K +V+F YP T C + F D D +V+G+S D+ + A+
Sbjct: 65 IRLRDITANKGLVIFAYPKASTPGCTKQGCGFRDNYPKIQASDYEVLGLSFDTSKAQKAF 124
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 28.3 bits (60), Expect = 1.0
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = +3
Query: 174 FSTTSTTRAPKVQKPAPDFSATAVVNGEFNQLKLSDFTGKYVVLFFYPLDFTFVCPTE 347
F+ +S+T Q P P F + +G+F + K V L YP TF TE
Sbjct: 257 FTLSSSTLLKLHQSPEPHFELISKYSGDFPWKSCTILKSKPVSLCVYPEKITFNWLTE 314
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/65 (24%), Positives = 30/65 (46%)
Frame = +1
Query: 265 NLNFQISRENT*FCSSIHWISHLYVRQSSXRSVIKLKTLLESIVR*LECPQTLSSVISHG 444
NLNFQ+ R F S++ R + +S + L++ + E +T+ +I
Sbjct: 724 NLNFQVGRSKIFFRSNVIGNFEEAHRATCSKSTVLLQSAIRGFFTRKEYQRTVKFIIKLQ 783
Query: 445 STLLG 459
S ++G
Sbjct: 784 SVIMG 788
>SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 263
Score = 25.8 bits (54), Expect = 5.4
Identities = 17/66 (25%), Positives = 33/66 (50%)
Frame = +3
Query: 153 KVAKRINFSTTSTTRAPKVQKPAPDFSATAVVNGEFNQLKLSDFTGKYVVLFFYPLDFTF 332
KV +R N +T P++ A ++++ N++ +DF GK+ +++F
Sbjct: 79 KVLERQNDKVLATIGRPQLG------GAFSLIDHHGNRVTDNDFKGKFSLIYFGFTRCPD 132
Query: 333 VCPTEL 350
+CP EL
Sbjct: 133 ICPDEL 138
>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
Paa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 141 SPAFKVAKRINFSTTSTTRAPKVQKPA 221
+PA KV+ R +FS AP V++PA
Sbjct: 160 NPAVKVSLRQSFSHLCHDEAPMVRRPA 186
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +2
Query: 89 HARKNVVHCEATKSKCTVAGFQSSKKD 169
H K+ HC KC+V GF +D
Sbjct: 813 HLGKSCPHCGQPLPKCSVCGFSLGDED 839
>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 481
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +3
Query: 186 STTRAPKVQKPAP 224
STT PKVQKP P
Sbjct: 362 STTTQPKVQKPVP 374
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -2
Query: 227 VWSRLLNFRSSCSAGRRKINPFCYF 153
+W+R+L SC A K N + YF
Sbjct: 552 IWARILAVDDSCQADLLKDNGYGYF 576
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = -2
Query: 368 FITERYELCRTYKCEIQWIEEQNYVF 291
F T+ + L RT+K +++WI+ N ++
Sbjct: 2536 FFTDSH-LIRTFKLDVRWIQIDNQLY 2560
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,549,940
Number of Sequences: 5004
Number of extensions: 52390
Number of successful extensions: 146
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -