Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_L17
(651 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35) 155 2e-38
SB_46004| Best HMM Match : No HMM Matches (HMM E-Value=.) 100 2e-21
SB_39285| Best HMM Match : Proteasome (HMM E-Value=0) 91 5e-19
SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17) 73 2e-13
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11) 30 1.4
SB_6255| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
>SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35)
Length = 224
Score = 155 bits (377), Expect = 2e-38
Identities = 80/144 (55%), Positives = 97/144 (67%)
Frame = +1
Query: 220 GLTSVALRGTDAAVVAAQRKVPDRLLDPVSVTHLFALTDRIGCVMTGMIADSRSQVQRAR 399
GLTSV +RG D+AVV Q+KVP P+ ADSRSQVQRAR
Sbjct: 36 GLTSVGIRGADSAVVVTQKKVPL----PIPQ------------------ADSRSQVQRAR 73
Query: 400 YEAANWQYKYGSXIPVHILCRRIADISQVYTQNAXMRPLGCSMMLIAYDDEAGPCVYKTD 579
YEAANW+YK+G IPV +LC+RIADISQVYTQNA MRPLGC M+LI D+E GP +YKTD
Sbjct: 74 YEAANWKYKFGYEIPVDMLCKRIADISQVYTQNAEMRPLGCGMILIGIDEEKGPQLYKTD 133
Query: 580 PSGYYCSYKAVXAGAXTVDGNAYL 651
P+GY+C +KA G + N++L
Sbjct: 134 PAGYFCGFKACSVGVKQTEANSFL 157
Score = 46.8 bits (106), Expect = 2e-05
Identities = 20/23 (86%), Positives = 22/23 (95%)
Frame = +3
Query: 114 MARESSAGFDRHITIFSPEGRLY 182
M+R +SAGFDRHITIFSPEGRLY
Sbjct: 1 MSRGTSAGFDRHITIFSPEGRLY 23
>SB_46004| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 78
Score = 99.5 bits (237), Expect = 2e-21
Identities = 43/53 (81%), Positives = 49/53 (92%)
Frame = +1
Query: 364 IADSRSQVQRARYEAANWQYKYGSXIPVHILCRRIADISQVYTQNAXMRPLGC 522
+ADSRSQVQRARYEAANW+YK+G IPV +LC+R+ADISQVYTQNA MRPLGC
Sbjct: 25 VADSRSQVQRARYEAANWKYKFGYEIPVDMLCKRVADISQVYTQNAEMRPLGC 77
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/25 (88%), Positives = 24/25 (96%)
Frame = +3
Query: 114 MARESSAGFDRHITIFSPEGRLYQV 188
M+R +SAGFDRHITIFSPEGRLYQV
Sbjct: 1 MSRGTSAGFDRHITIFSPEGRLYQV 25
>SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)
Length = 215
Score = 91.5 bits (217), Expect = 5e-19
Identities = 44/139 (31%), Positives = 76/139 (54%)
Frame = +1
Query: 220 GLTSVALRGTDAAVVAAQRKVPDRLLDPVSVTHLFALTDRIGCVMTGMIADSRSQVQRAR 399
G T+V +RG + V+ +RK +L +P +V + L D + G+ AD+R V +AR
Sbjct: 31 GSTAVGVRGNNIVVLGVERKAVAKLQEPRTVRKICTLDDHVLMAFAGLTADARILVNKAR 90
Query: 400 YEAANWQYKYGSXIPVHILCRRIADISQVYTQNAXMRPLGCSMMLIAYDDEAGPCVYKTD 579
E + + + + + R IA + Q YTQ+ RP G S +++ +D + P +Y+TD
Sbjct: 91 VECQSHKLTVEDPVTLEYITRFIATLKQRYTQSNGRRPFGISTLIVGFDFDGTPRLYQTD 150
Query: 580 PSGYYCSYKAVXAGAXTVD 636
PSG Y ++K V +G ++
Sbjct: 151 PSGTYHAWKVVQSGGKNIE 169
Score = 41.1 bits (92), Expect = 8e-04
Identities = 16/29 (55%), Positives = 23/29 (79%)
Frame = +3
Query: 129 SAGFDRHITIFSPEGRLYQVEYALKAINQ 215
S +DR IT+FSP+G L+QVEYA +A+ +
Sbjct: 2 SGSYDRAITVFSPDGHLFQVEYAQEAVKK 30
>SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)
Length = 308
Score = 72.9 bits (171), Expect = 2e-13
Identities = 36/104 (34%), Positives = 58/104 (55%)
Frame = +1
Query: 226 TSVALRGTDAAVVAAQRKVPDRLLDPVSVTHLFALTDRIGCVMTGMIADSRSQVQRARYE 405
T++A+R D V ++ V +L + + +F + IG + G+IADSR V AR E
Sbjct: 165 TAIAIRCKDGVVFGVEKLVLSKLYEYGANKRIFHIDTHIGMAIAGLIADSRQIVATAREE 224
Query: 406 AANWQYKYGSXIPVHILCRRIADISQVYTQNAXMRPLGCSMMLI 537
AAN++ YGS IP+ L R++ +T + MRP GC + ++
Sbjct: 225 AANYRSVYGSPIPLKYLVNRVSGFIHAFTLYSAMRPFGCRIYVV 268
Score = 32.7 bits (71), Expect = 0.27
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +3
Query: 138 FDRHITIFSPEGRLYQVEYALKAI 209
+D + FSP+GR++QVEYA KA+
Sbjct: 137 YDLSASQFSPDGRVFQVEYANKAV 160
>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
Length = 3810
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = +1
Query: 427 YGSXIPVHILCRRIADISQV--YTQNAXMRPLGCSMMLIAYDDEAGPCVYKTDPSGYYC 597
YG+ ++ + I D+ Y RPLGC +Y D G K PSGY+C
Sbjct: 1948 YGNCSALYDIHTGIGDVCPTGHYCPIGSARPLGCPAG--SYQDNKGMSHCKDCPSGYFC 2004
>SB_6255| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 526
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/65 (30%), Positives = 29/65 (44%)
Frame = -3
Query: 553 LHRRTLSASYCNPEVSSXHFGCKLERYQLCVCIRYAQVXQTHTCTASWQPRSELVVLETG 374
++ +TL S E+ F +R++L C Y TH CT +W P S L E G
Sbjct: 412 IYWKTLGESVKYVEMKIKSFPTATKRWELTFCPFYR--IWTH-CTVTWSPVSGLKYYENG 468
Query: 373 YQQSS 359
+S
Sbjct: 469 VLTAS 473
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,780,549
Number of Sequences: 59808
Number of extensions: 358900
Number of successful extensions: 799
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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