Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_L08
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)             167   7e-42
SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)         150   1e-36
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23)                   28   5.7  
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)                    28   7.6  

>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
          Length = 328

 Score =  167 bits (406), Expect = 7e-42
 Identities = 96/207 (46%), Positives = 119/207 (57%), Gaps = 37/207 (17%)
 Frame = +3

Query: 141 RRREGKTDYYARKR------------------------LVVQDKNKYNTP------KYRL 230
           RR +GKTDYYARKR                        ++ Q++NK   P      KYR 
Sbjct: 17  RRSQGKTDYYARKRLITQDKNKYNTPKYRFVVRITNKDIICQERNKVGGPIFGSTQKYRR 76

Query: 231 IVRLS-NK------DVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXX 389
             R   NK          ++AY++++GD ++ +AY+HELP +GVKVGLTNYAAAY TG  
Sbjct: 77  NSRGKYNKRNIFILQTYARIAYAKLDGDRVLASAYAHELPNFGVKVGLTNYAAAYCTGLL 136

Query: 390 XXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPXAFRCYLDVGLARTTTGARVFGAMK 569
                                   EYNVE VD  P AFRC+LDVGLART+TGARVFGA+K
Sbjct: 137 LARRLLTMLNLHEIYTGTDDVNGDEYNVESVDGSPGAFRCFLDVGLARTSTGARVFGALK 196

Query: 570 GAVDGGLNVPHSIKRFPXYDAESKKFN 650
           GAVDGGL +PHS+KRFP YD+ESK F+
Sbjct: 197 GAVDGGLEIPHSMKRFPGYDSESKDFS 223


>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
          Length = 113

 Score =  150 bits (363), Expect = 1e-36
 Identities = 68/112 (60%), Positives = 79/112 (70%)
 Frame = +3

Query: 267 VAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXX 446
           +AY+++EGD I+CAAY+HELPRYGVKVGLTNYAAAY TG                     
Sbjct: 1   IAYAKLEGDVIICAAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTKLNLHEIYTGTE 60

Query: 447 XXXXXEYNVEPVDNGPXAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPH 602
                EYNVE +D  P AFRC+LDVGLART+TGARVFGA+KGAVDGGL +PH
Sbjct: 61  EVNGDEYNVESIDGSPGAFRCFLDVGLARTSTGARVFGALKGAVDGGLEIPH 112


>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 228 LIVRLSNKDVTCQVAYSRIEGD-HIVC 305
           L++ LS +D+TC V YS   G+ H +C
Sbjct: 108 LLLYLSKRDITCPVPYSSRNGELHTMC 134


>SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23)
          Length = 232

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -2

Query: 164 ISFPFTTPLEFYLVPLEVLFVLHNFNESHILNLSYK 57
           ISFPFTT  E Y    +V F+    N    LNL+ +
Sbjct: 119 ISFPFTTRKEAYRQLSKVPFIAGTTNTQEALNLAQR 154


>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3160

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +3

Query: 276 SRIEGDHIVCAAYSH-ELPRYGVKVGLTNYAAAY 374
           ++  GDH+  A+YSH ++ R+ V + L    AAY
Sbjct: 133 AKYRGDHLDIASYSHQQIDRFAVLLDLWTNEAAY 166


>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2735

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 96  VKNKQYFKRYQVKFKRRREGKTDYYARKRLVV 191
           VK+K+  KR   K KR+ + K+D + RK+ ++
Sbjct: 228 VKHKRKQKRKSAKHKRKHKRKSDKHKRKQTLI 259


>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
          Length = 1952

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 81   GFVKVVKNKQYFKRYQVKFKRRREGKTDY 167
            GF++ +K +    RY VK  R R    DY
Sbjct: 1090 GFIEALKRRDVSSRYNVKHARFRRATNDY 1118


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,050,975
Number of Sequences: 59808
Number of extensions: 392690
Number of successful extensions: 1203
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)