BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P02_F_L08 (651 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0) 167 7e-42 SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30) 150 1e-36 SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3 SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23) 28 5.7 SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7 SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6 SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048) 28 7.6 >SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0) Length = 328 Score = 167 bits (406), Expect = 7e-42 Identities = 96/207 (46%), Positives = 119/207 (57%), Gaps = 37/207 (17%) Frame = +3 Query: 141 RRREGKTDYYARKR------------------------LVVQDKNKYNTP------KYRL 230 RR +GKTDYYARKR ++ Q++NK P KYR Sbjct: 17 RRSQGKTDYYARKRLITQDKNKYNTPKYRFVVRITNKDIICQERNKVGGPIFGSTQKYRR 76 Query: 231 IVRLS-NK------DVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXX 389 R NK ++AY++++GD ++ +AY+HELP +GVKVGLTNYAAAY TG Sbjct: 77 NSRGKYNKRNIFILQTYARIAYAKLDGDRVLASAYAHELPNFGVKVGLTNYAAAYCTGLL 136 Query: 390 XXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPXAFRCYLDVGLARTTTGARVFGAMK 569 EYNVE VD P AFRC+LDVGLART+TGARVFGA+K Sbjct: 137 LARRLLTMLNLHEIYTGTDDVNGDEYNVESVDGSPGAFRCFLDVGLARTSTGARVFGALK 196 Query: 570 GAVDGGLNVPHSIKRFPXYDAESKKFN 650 GAVDGGL +PHS+KRFP YD+ESK F+ Sbjct: 197 GAVDGGLEIPHSMKRFPGYDSESKDFS 223 >SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30) Length = 113 Score = 150 bits (363), Expect = 1e-36 Identities = 68/112 (60%), Positives = 79/112 (70%) Frame = +3 Query: 267 VAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXX 446 +AY+++EGD I+CAAY+HELPRYGVKVGLTNYAAAY TG Sbjct: 1 IAYAKLEGDVIICAAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTKLNLHEIYTGTE 60 Query: 447 XXXXXEYNVEPVDNGPXAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPH 602 EYNVE +D P AFRC+LDVGLART+TGARVFGA+KGAVDGGL +PH Sbjct: 61 EVNGDEYNVESIDGSPGAFRCFLDVGLARTSTGARVFGALKGAVDGGLEIPH 112 >SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 411 Score = 28.7 bits (61), Expect = 4.3 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%) Frame = +3 Query: 228 LIVRLSNKDVTCQVAYSRIEGD-HIVC 305 L++ LS +D+TC V YS G+ H +C Sbjct: 108 LLLYLSKRDITCPVPYSSRNGELHTMC 134 >SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23) Length = 232 Score = 28.3 bits (60), Expect = 5.7 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = -2 Query: 164 ISFPFTTPLEFYLVPLEVLFVLHNFNESHILNLSYK 57 ISFPFTT E Y +V F+ N LNL+ + Sbjct: 119 ISFPFTTRKEAYRQLSKVPFIAGTTNTQEALNLAQR 154 >SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 3160 Score = 28.3 bits (60), Expect = 5.7 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%) Frame = +3 Query: 276 SRIEGDHIVCAAYSH-ELPRYGVKVGLTNYAAAY 374 ++ GDH+ A+YSH ++ R+ V + L AAY Sbjct: 133 AKYRGDHLDIASYSHQQIDRFAVLLDLWTNEAAY 166 >SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2735 Score = 27.9 bits (59), Expect = 7.6 Identities = 12/32 (37%), Positives = 21/32 (65%) Frame = +3 Query: 96 VKNKQYFKRYQVKFKRRREGKTDYYARKRLVV 191 VK+K+ KR K KR+ + K+D + RK+ ++ Sbjct: 228 VKHKRKQKRKSAKHKRKHKRKSDKHKRKQTLI 259 >SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048) Length = 1952 Score = 27.9 bits (59), Expect = 7.6 Identities = 11/29 (37%), Positives = 15/29 (51%) Frame = +3 Query: 81 GFVKVVKNKQYFKRYQVKFKRRREGKTDY 167 GF++ +K + RY VK R R DY Sbjct: 1090 GFIEALKRRDVSSRYNVKHARFRRATNDY 1118 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,050,975 Number of Sequences: 59808 Number of extensions: 392690 Number of successful extensions: 1203 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 1068 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1194 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1657237625 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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