Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_L06
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb... 31 0.14
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 30 0.33
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.76
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 28 1.0
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 28 1.3
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 1.8
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M... 26 4.1
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p... 26 4.1
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub... 26 5.4
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 26 5.4
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 25 7.1
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa... 25 9.4
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo... 25 9.4
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo... 25 9.4
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo... 25 9.4
>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 31.1 bits (67), Expect = 0.14
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -2
Query: 596 KNKFQADDHNHQKSQTCRRDLHIQPNQNHHHPLERNHYH 480
K ++ NH + +DLH + + +HHH +H H
Sbjct: 274 KKSSESGSTNHHNNHESDKDLHHEGHHHHHHHHHHHHSH 312
Score = 26.2 bits (55), Expect = 4.1
Identities = 8/43 (18%), Positives = 23/43 (53%)
Frame = +2
Query: 338 NDEPPTASDEREPATPEPEDPVQEEAAAENDKPSCSTSSKDND 466
+D+P + +++++ P P + +Q+ + ++K S N+
Sbjct: 313 DDDPSSPAEKKQNHVPSPSEKIQDHVPSPSEKKQDRVPSPSNN 355
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 29.9 bits (64), Expect = 0.33
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +2
Query: 335 QNDEPPTASDEREPATPEPEDPVQEEAAAENDKPSCST 448
+ EPP S ++ P+TP ++ A +N +PS ++
Sbjct: 30 ETTEPPPPSSQQPPSTPNGKEAASPSALKQNVRPSLNS 67
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 28.7 bits (61), Expect = 0.76
Identities = 25/137 (18%), Positives = 55/137 (40%), Gaps = 6/137 (4%)
Frame = +2
Query: 80 GNFSIAESTLISMESSEVAKEEVVQETGDLNGAKAGPDTDREAGESSGVLIQLEEEAQDD 259
G+F + ++ + E+S + + Q D + + +T + ES+ LE ++++
Sbjct: 25 GDFISSNTSSSNSENSNIQGKHYTQVGEDADNSFISENTPKNTFESTQTYENLESISKNE 84
Query: 260 LRTTRKRKMILXXXXXXXXXXXXSVQND---EPPTASDEREPATPEPEDPVQEEAAAEND 430
+ + ++ + N+ E P + P P PE+P+ E N+
Sbjct: 85 PTSEASKPLLNELVPEEPLPREPPLPNEPVPEEPLPGEPPLPDEPVPEEPLPGEPPLPNE 144
Query: 431 ---KPSCSTSSKDNDST 472
+ +C S +D T
Sbjct: 145 PVPETNCHKESPLSDET 161
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 28.3 bits (60), Expect = 1.0
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -1
Query: 225 TPEDSPASRSVSGPALAPFRSPVSWTTSSLATSLDSMLISVDSAIE 88
TP +S + S+ + P S + TTSS++ + S+L S D I+
Sbjct: 112 TPSNSSSLPSIPSSSSTPSISSIPHTTSSVSNDIPSVLGSSDHPID 157
>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 841
Score = 27.9 bits (59), Expect = 1.3
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +2
Query: 347 PPTASDEREPATPEPEDPVQEEAAAENDKPSCSTSSKDND 466
P S + TP P + +EE A E PS T + ND
Sbjct: 278 PTILSRTKSVETPVPMEAAEEEPATEYSIPSSVTFNSQND 317
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.5 bits (58), Expect = 1.8
Identities = 25/128 (19%), Positives = 57/128 (44%), Gaps = 1/128 (0%)
Frame = +2
Query: 89 SIAESTLISMESSEV-AKEEVVQETGDLNGAKAGPDTDREAGESSGVLIQLEEEAQDDLR 265
S +ES S ESS ++EEV+ +T + + + + E+ E ++++EE+ +
Sbjct: 106 SSSESESSSSESSSSESEEEVIVKTEEKKESSSESSSSSESEEEEEAVVKIEEKKESSSD 165
Query: 266 TTRKRKMILXXXXXXXXXXXXSVQNDEPPTASDEREPATPEPEDPVQEEAAAENDKPSCS 445
++ + S + +E ++E++ + E E ++ + + S
Sbjct: 166 SSSESS---SSESESESSSSESEEEEEVVEKTEEKKEGSSESSSD-SESSSDSSSESGDS 221
Query: 446 TSSKDNDS 469
SS D++S
Sbjct: 222 DSSSDSES 229
>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 535
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +2
Query: 368 REPATPEPEDPVQEEAA--AENDKPSCSTSSK 457
+EPA P P+ E A AEN +PS S+ K
Sbjct: 321 KEPAKPVPQPSSNEPPAPSAENKQPSVSSPEK 352
>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 669
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = -2
Query: 557 SQTC---RRDLHIQPNQNHHHPLERNHYHPRLLNHC 459
++TC R + IQ N PL RN Y P+LL C
Sbjct: 264 TKTCNVFRSLIQIQKNIMKEDPLIRNDYEPQLLPIC 299
>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 214
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 344 EPPTASDEREPATPEPEDPVQEEA 415
EPP ++ EPE+P +EEA
Sbjct: 104 EPPQPEEKEGKEAKEPEEPPKEEA 127
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -2
Query: 608 ISVEKNKFQADDHNHQKSQTCRRDLHIQPNQNHHHPLERNHYH 480
+ +K + DDH Q T H + +Q HHH NH H
Sbjct: 514 VEAQKMGYTNDDHVSQHEHT-----H-ENSQEHHHEHNHNHDH 550
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 362 DEREPATPEPEDPVQEEAAAENDKPSCSTSSKDNDS 469
+E E A E VQ E +KPS + S+ +ND+
Sbjct: 317 EEVEKAIEEETKSVQANEENETEKPSQTESTTNNDN 352
>SPAC1783.07c |pap1|caf3, caf3|transcription factor
Caf3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 552
Score = 25.0 bits (52), Expect = 9.4
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +2
Query: 104 TLISMESSEVAKEEVVQETGDLNGA--KAGPDTDREAGESSGVLIQLEEEAQDDLRTTRK 277
TL S + +AK E +++ D + + K GP +DR + +S + L D++ K
Sbjct: 7 TLSSTSNIPIAKAEP-EQSADFSASHKKRGPVSDRSSRRTSSEEVDLMPNVDDEVDGDVK 65
Query: 278 RKMI 289
K I
Sbjct: 66 PKKI 69
>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +2
Query: 215 SSGVLIQLEEEAQDDLRTTRKRKMIL 292
++G +E ++QDDLR RK ++ +
Sbjct: 574 ANGSAFWIEGQSQDDLRKARKERLFI 599
>SPBC215.01 ||SPBC3B9.20|GTPase activating
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 554 EISDDYDRQLEIYFSQRKFS 613
E SD+YD L++Y Q FS
Sbjct: 242 ENSDEYDHLLKVYSGQTSFS 261
>SPAC637.12c |mst1||histone acetyltransferase
Mst1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 353 TASDEREPATPEPEDPVQEEAAAENDKPS 439
TA + EP+TP E P + E+D S
Sbjct: 109 TAPSKTEPSTPSTEKPEPSTPSGESDHGS 137
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,156,376
Number of Sequences: 5004
Number of extensions: 38679
Number of successful extensions: 165
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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