Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_L06
(648 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22016| Best HMM Match : HSP90 (HMM E-Value=0) 38 0.007
SB_45137| Best HMM Match : Involucrin2 (HMM E-Value=0.59) 33 0.15
SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.26
SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.61
SB_51674| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.81
SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3) 31 0.81
SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0) 31 1.1
SB_51462| Best HMM Match : Ion_trans_2 (HMM E-Value=2.3e-15) 31 1.1
SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0) 30 1.9
SB_48649| Best HMM Match : DUF809 (HMM E-Value=1.3) 29 2.5
SB_44298| Best HMM Match : Herpes_US9 (HMM E-Value=8.9) 29 2.5
SB_51046| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_29636| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_26487| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_25894| Best HMM Match : Coatomer_WDAD (HMM E-Value=0) 29 4.3
SB_12921| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_43576| Best HMM Match : EGF_CA (HMM E-Value=2.7e-38) 28 5.7
SB_37651| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_14313| Best HMM Match : I-set (HMM E-Value=1.8e-21) 28 5.7
SB_22156| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_16622| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 7.5
SB_57666| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_19825| Best HMM Match : TPR_2 (HMM E-Value=4.8e-30) 28 7.5
SB_44482| Best HMM Match : RRM_1 (HMM E-Value=0.19) 27 9.9
SB_42034| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_13248| Best HMM Match : SCP (HMM E-Value=2.6e-21) 27 9.9
SB_12611| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_47462| Best HMM Match : Ras (HMM E-Value=0) 27 9.9
SB_32051| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_9400| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)
Length = 581
Score = 37.9 bits (84), Expect = 0.007
Identities = 24/130 (18%), Positives = 54/130 (41%)
Frame = +2
Query: 77 FGNFSIAESTLISMESSEVAKEEVVQETGDLNGAKAGPDTDREAGESSGVLIQLEEEAQD 256
+ + +AE +++ + ++ E+ + E+ D+ G + +++ L+E+ +
Sbjct: 75 YSAYLVAEKVVVTTKHND--DEQYIWESAAGGSFTVKRDSGEPLGRGTKIVLYLKEDQTE 132
Query: 257 DLRTTRKRKMILXXXXXXXXXXXXSVQNDEPPTASDEREPATPEPEDPVQEEAAAENDKP 436
L R ++++ VQ + SD+ E E +D +EE + DKP
Sbjct: 133 YLEEKRIKEIVKKHSQFIGYPLSLLVQKERDKEVSDDEE-EEEEKKDEEEEEEDGDKDKP 191
Query: 437 SCSTSSKDND 466
+D D
Sbjct: 192 KIEDMDEDED 201
>SB_45137| Best HMM Match : Involucrin2 (HMM E-Value=0.59)
Length = 421
Score = 33.5 bits (73), Expect = 0.15
Identities = 24/117 (20%), Positives = 49/117 (41%), Gaps = 3/117 (2%)
Frame = +2
Query: 122 SSEVAKEEVVQETGD-LNGAKAG--PDTDREAGESSGVLIQLEEEAQDDLRTTRKRKMIL 292
++E+ +E +E D + G + G PD EA S V++ +EE + R+ +
Sbjct: 195 AAELKEESSSEEEPDFVYGRQVGYAPDEKEEASSESDVVLGQQEEVSGESDVAPDRQEEI 254
Query: 293 XXXXXXXXXXXXSVQNDEPPTASDEREPATPEPEDPVQEEAAAENDKPSCSTSSKDN 463
+DE A D++E E ++ ++E+A + + +D+
Sbjct: 255 ASGESDVTLDQQEEASDELDGAPDQQEGTAGELDEAIEEQAERASQQQQGEQGDRDS 311
>SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1984
Score = 32.7 bits (71), Expect = 0.26
Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 3/117 (2%)
Frame = +2
Query: 122 SSEVAKEEVVQETGD-LNGAKAG--PDTDREAGESSGVLIQLEEEAQDDLRTTRKRKMIL 292
++E+ +E +E D + G G PD EA S V++ +EE + R+ +
Sbjct: 1263 AAELKEESSSEEEPDFVYGRPVGYAPDEKEEASSESDVVLGQQEEVSGESDVAPDRQEEI 1322
Query: 293 XXXXXXXXXXXXSVQNDEPPTASDEREPATPEPEDPVQEEAAAENDKPSCSTSSKDN 463
+DE A D++E E ++ ++E+A + + +D+
Sbjct: 1323 ASGESDVSLDQQEEASDELDGAPDQQEGTAGELDEAIEEQAERASQQQQGEQGDRDS 1379
>SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 736
Score = 31.5 bits (68), Expect = 0.61
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = -2
Query: 572 HNHQKSQTCRRDLHIQPNQNHHHPLERNHYHPRLLN 465
H H Q H N +HHH +H+H ++N
Sbjct: 265 HQHNHHQHHHHHHHHHHNHHHHHQQHHHHHHHHIIN 300
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -2
Query: 572 HNHQKSQTCRRDLHIQPNQNHHHPLERNHYH 480
H+HQ + H + NHHH +++H+H
Sbjct: 263 HHHQHNHHQHHHHHHHHHHNHHHHHQQHHHH 293
>SB_51674| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 833
Score = 31.1 bits (67), Expect = 0.81
Identities = 12/50 (24%), Positives = 23/50 (46%)
Frame = -2
Query: 617 NRRISVEKNKFQADDHNHQKSQTCRRDLHIQPNQNHHHPLERNHYHPRLL 468
NR + K+ H+H K ++ H Q+HH + +H+H ++
Sbjct: 221 NRYVYNGKSCGDGKQHHHHKQHHHQQQRHHHHEQHHHQQQQHHHHHEHII 270
>SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)
Length = 509
Score = 31.1 bits (67), Expect = 0.81
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Frame = -2
Query: 593 NKFQADDHNHQKSQT--CRRDL---HIQPNQN--HHHPLERNHYHPRLLNHC 459
++F+ H+H S+ C R L H++P++ +H P NH+ P L HC
Sbjct: 389 HRFRLSIHHHPSSRHHHCHRPLLFNHLRPSRCLLYHRPRLSNHHRPSRLLHC 440
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Frame = -2
Query: 593 NKFQADDHNHQKSQTCRRDLHIQPNQNHHH---PLERNHYHPRLLNHCLLKM*SKTAYHF 423
N + H H + R +H P+ HHH P H+ P HC + K+ +H
Sbjct: 447 NHLRLSRHLHYHRR--RLSIHHHPSSRHHHCHRPRLSKHHRPSRRLHCHIPSAFKSIFHL 504
Query: 422 QPL 414
L
Sbjct: 505 LAL 507
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = -2
Query: 560 KSQTCRRDLHI-QPN-QNHHHPLERNHYH-PRLLNH 462
+S + R LH +P NHH P +H H PRL NH
Sbjct: 224 QSSSPSRHLHCHRPRLSNHHRPSRHHHCHRPRLSNH 259
>SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1387
Score = 30.7 bits (66), Expect = 1.1
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Frame = +2
Query: 122 SSEVAKEEVVQETGD-LNGAKAG--PDTDREAGESSGVLIQLEEEAQDDLRTTRKRKMIL 292
++E+ +E +E D + G + G PD EA S V++ +EE + R+ +
Sbjct: 1024 AAELKEESSSEEEPDFVYGRQVGYAPDEKEEASSESDVVLGQQEEVSGESDVAPDRQEEI 1083
Query: 293 XXXXXXXXXXXXSVQNDEPPTASDEREPATPEPED-PVQEEAAA 421
+DE A D++E A+ E + P Q+E A
Sbjct: 1084 ASGESDVSLDQQEEASDELDGAPDQQEGASGELDGAPDQQEGTA 1127
>SB_51462| Best HMM Match : Ion_trans_2 (HMM E-Value=2.3e-15)
Length = 930
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = +3
Query: 426 MISRLALHLQKTMIQQSRMIMIPFKRMMMILIGLNMEITTACLRFLMIMIVSLKFIFLNG 605
++S LA + + R + F R +GL + T+C+ +MI+I++ +L G
Sbjct: 664 LLSTLAQGVNNMICASIRYLYDRFSRTQPSRVGLKCALVTSCISMIMILIIATFAHYLEG 723
>SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)
Length = 1452
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +2
Query: 98 ESTLISMESSEVAKEEVVQETGDLNGAKAGPDTDREAGESSGVLIQLEEEAQDD 259
ES +++ E K E + GD+ K P+ +REA E V+I+ +DD
Sbjct: 1265 ESGESKVKTKEAEKAEAKAKVGDVPMEKCAPEQEREATEDD-VIIEAVSPDEDD 1317
>SB_48649| Best HMM Match : DUF809 (HMM E-Value=1.3)
Length = 222
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 119 ESSEVAKEEVVQETGDLNGAKAGPDTDREAGESSGVLIQLEEEAQ 253
E E A+EEVV+ N +AG + G SG ++ E++A+
Sbjct: 117 EEEEEAEEEVVKREVIGNDKRAGEKNKDDGGNKSGEEVKAEQDAE 161
>SB_44298| Best HMM Match : Herpes_US9 (HMM E-Value=8.9)
Length = 138
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -2
Query: 572 HNHQKSQTCRRDLHIQPNQNHHHPLERNHYHPRLLN 465
H+H Q H N +HHH + +H+H ++N
Sbjct: 46 HHHHHHQHNHHQHHHHHNHHHHHQ-QHHHHHHHIIN 80
>SB_51046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 261
Score = 28.7 bits (61), Expect = 4.3
Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 2/104 (1%)
Frame = +2
Query: 167 LNGAKAGPDTDREAGESSGVLIQLEEEAQDD-LRTTRKRKMILXXXXXXXXXXXXSVQND 343
L G K P + +L EE D+ + RKR+ + + N+
Sbjct: 17 LEGVKEMPKENGVLVNGDATAAELGEEDDDEEIVRPRKRRRSIALSDASSDISGLTKPNE 76
Query: 344 EPPTASDEREPATPEPEDPVQEEAAAENDKPSCSTSS-KDNDST 472
A+D++ E E E+ +A+ + SS D+DS+
Sbjct: 77 PEEEANDDQAQPGNEVEKGATEDPSAKKPRTDAEGSSDSDSDSS 120
>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1906
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 292 QYHFTFSGSSEVILCFLF*LNEYSGGLSCLAVGVWAR 182
+YHF E ++ LF + EY G L ++GV +R
Sbjct: 1105 KYHFELRCRDEGVVRMLFEMKEYEGDLDYRSIGVSSR 1141
>SB_29636| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 306
Score = 28.7 bits (61), Expect = 4.3
Identities = 28/118 (23%), Positives = 45/118 (38%), Gaps = 1/118 (0%)
Frame = +2
Query: 119 ESSEVAKEEVVQETGDLNGAKA-GPDTDREAGESSGVLIQLEEEAQDDLRTTRKRKMILX 295
++ E EE E D+ G + PD + + G E+EA ++ + K L
Sbjct: 153 DAPEAFDEEEKPEENDMGGTEEENPDVPSDEPLTGGTEEDDEKEASEE----EEGKPSLE 208
Query: 296 XXXXXXXXXXXSVQNDEPPTASDEREPATPEPEDPVQEEAAAENDKPSCSTSSKDNDS 469
+ + EP E TP+ E P E+A E + P S K+ D+
Sbjct: 209 DGTEDTPEANKTPE--EPKEDEKVTEEETPKEETPKVEDAPEEVEAPKEEESPKEEDT 264
>SB_26487| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 941
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 351 RPPPTSANRRHLNPRILFKRKQRLKMISRL 440
RPPPT RR + PR+L + + +++L
Sbjct: 764 RPPPTDPLRRIMRPRLLIRGRHHCMHVTQL 793
>SB_25894| Best HMM Match : Coatomer_WDAD (HMM E-Value=0)
Length = 1066
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +2
Query: 347 PPTASD-EREPATPEPEDPVQEEAAAENDKPSCSTSSKD 460
PP A E EP P P P + A A + + TSS D
Sbjct: 778 PPQAKPAEPEPLAPRPSSPQTQPAPAPPEPAAAPTSSND 816
>SB_12921| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 187
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/60 (25%), Positives = 31/60 (51%)
Frame = +3
Query: 420 LKMISRLALHLQKTMIQQSRMIMIPFKRMMMILIGLNMEITTACLRFLMIMIVSLKFIFL 599
+ M+ L + + M+ M+MI MMMIL+ + M + + +M+M+V + + +
Sbjct: 44 MMMMMILMMMMMMMMMMMMMMMMILMMMMMMILMMILMMMMMMMMIMMMMMVVMMMMMMV 103
>SB_43576| Best HMM Match : EGF_CA (HMM E-Value=2.7e-38)
Length = 641
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -2
Query: 578 DDHNHQKSQTCRRDLH-IQPNQNHHHPLERNHYHPR 474
+ H+HQK Q H Q NQ+H H ++ + H R
Sbjct: 568 NQHHHQKQQNQHHRHHQKQQNQHHRHHQKKQNQHYR 603
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = -2
Query: 590 KFQADDHNHQKSQTCRRDLHIQPNQN---HHHPLERNHYHPR 474
K Q H H + Q + H Q QN HH ++N +H R
Sbjct: 574 KQQNQHHRHHQKQQNQHHRHHQKKQNQHYRHHQKQQNQHHHR 615
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -2
Query: 599 EKNKFQADDHNHQKSQTCRRDLHIQPNQNHH-HPLERNHYHPR 474
+K + Q H+ +K R Q NQ+HH H ++N +H R
Sbjct: 584 QKQQNQHHRHHQKKQNQHYRHHQKQQNQHHHRHRKQQNQHHHR 626
>SB_37651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 566 HQKSQTCRRDLHIQPNQNHHHPL 498
H+ S CRR HI PN + +HPL
Sbjct: 73 HELSSLCRR--HISPNTDGNHPL 93
>SB_14313| Best HMM Match : I-set (HMM E-Value=1.8e-21)
Length = 221
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 341 DEPPTASDEREPATPEPEDPVQEEAAAENDKPSCSTSSK 457
DEP TA + + PA +P D ++ A ++ +CS S +
Sbjct: 25 DEPKTAKNTKAPAFNQPLDRSRDVAEDKDFSITCSASGR 63
>SB_22156| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1551
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +2
Query: 122 SSEVAKEEVVQETGD-LNGAKAG--PDTDREAGESSGVLIQLEEEAQDDL 262
++E+ +E +E D + G + G PD EA S V + +EEA D+L
Sbjct: 568 AAELKEESSSEEEPDFVYGRQVGYAPDEKEEASSESDVSLDQQEEASDEL 617
>SB_16622| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1239
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/41 (24%), Positives = 24/41 (58%)
Frame = +3
Query: 480 MIMIPFKRMMMILIGLNMEITTACLRFLMIMIVSLKFIFLN 602
M+M+ M+M++I + M + + LM+M+V + + ++
Sbjct: 111 MVMLMLMAMVMVMIVMAMTVMLMAMLILMVMVVMIVVVMVS 151
>SB_57666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +2
Query: 122 SSEVAKEEVVQETGD-LNGAKAG--PDTDREAGESSGVLIQLEEEAQDDL 262
++E+ +E +E D + G + G PD EA S V + +EEA D+L
Sbjct: 195 AAELKEESSSEEEPDFVYGRQVGYAPDEKEEASSESDVSLDQQEEASDEL 244
>SB_19825| Best HMM Match : TPR_2 (HMM E-Value=4.8e-30)
Length = 592
Score = 27.9 bits (59), Expect = 7.5
Identities = 22/118 (18%), Positives = 46/118 (38%), Gaps = 4/118 (3%)
Frame = +2
Query: 107 LISMESSEVAKEEVVQETGD--LNGAKAGPDTDREAGESSGVLIQLEEEAQDDLRTTRKR 280
++ E++E A + +++ D G K ++D E GE+ + Q+D
Sbjct: 475 ILEDEAAENAVSKAIRDVNDRIAQGVKTDENSD-ENGEAETKPDETVPSEQEDSSAVEPT 533
Query: 281 KMILXXXXXXXXXXXXSVQNDEPPTASDEREPATPEPED--PVQEEAAAENDKPSCST 448
+ ++PP ++ +P+ +P D P E+ + E K + T
Sbjct: 534 EAKDEDDTEEANDAGKETATEDPPKKEEDHQPSGEQPSDEQPSDEQPSDEQPKETEET 591
>SB_44482| Best HMM Match : RRM_1 (HMM E-Value=0.19)
Length = 486
Score = 27.5 bits (58), Expect = 9.9
Identities = 23/69 (33%), Positives = 31/69 (44%)
Frame = -1
Query: 225 TPEDSPASRSVSGPALAPFRSPVSWTTSSLATSLDSMLISVDSAIEKLPKI*F*CKDSTE 46
TP SP S + S P L P P+S + S SV + EK C + E
Sbjct: 85 TPPVSPPSSNTSSPNLHPEFIPLS-SEKSQENKPSGEFKSVGNNNEKENA----CNNKIE 139
Query: 45 RQDVEPSPT 19
R+D+E SP+
Sbjct: 140 REDMELSPS 148
>SB_42034| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 504
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 101 STLISMESSEVAKEEVVQETGDLNGAKAGPDTDREAGESS 220
S+ E SEV+ E + GDL G K P + E E +
Sbjct: 249 SSAFGSEESEVSSSEEESDEGDLFGEKKKPKDENEDEEEN 288
>SB_13248| Best HMM Match : SCP (HMM E-Value=2.6e-21)
Length = 631
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 347 PPTASDEREPATPEPEDPVQEEAAAENDKP 436
P S+E EP + PE P + +A E KP
Sbjct: 173 PQPGSEEPEPVSQAPEPPKPKTSAPEPPKP 202
>SB_12611| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 566
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -2
Query: 530 IQPNQNHHHPLERNHYHPRLLNHC 459
I Q HHP+ N YHP + C
Sbjct: 384 ILTQQTIHHPILSNRYHPSAMAKC 407
>SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 683
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -1
Query: 219 EDSPASRSVSGPALAPFRSPVSWTTSSLATSLDSMLISVDSAIEK 85
+DSP+ RS F ++ L S+D +L +DS I+K
Sbjct: 507 QDSPSPRSAPKKQAVSFCQDITEQCEGLKPSMDKVLAVLDSEIKK 551
>SB_47462| Best HMM Match : Ras (HMM E-Value=0)
Length = 385
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 2/20 (10%)
Frame = -3
Query: 232 NEYSG--GLSCLAVGVWARL 179
N+Y GLS LAVG+WAR+
Sbjct: 181 NDYENLMGLSVLAVGIWARI 200
>SB_32051| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1090
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 101 STLISMESSEVAKEEVVQETGDLNGAKAGPDTDREAGESS 220
S+ E SEV+ E + GDL G K P + E E +
Sbjct: 113 SSAFGSEESEVSSSEEESDEGDLFGEKKKPKDENEDEEEN 152
>SB_9400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/60 (20%), Positives = 31/60 (51%)
Frame = +3
Query: 420 LKMISRLALHLQKTMIQQSRMIMIPFKRMMMILIGLNMEITTACLRFLMIMIVSLKFIFL 599
+ M+ + + + M+ M+M+ MMMI+I + + + + ++I+IV + + +
Sbjct: 5 MMMVMMVMMMMMMMMVMMVMMVMMMMMMMMMIVIVVVVVVVVVVIVVIVIVIVVIVIVIV 64
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,490,222
Number of Sequences: 59808
Number of extensions: 324180
Number of successful extensions: 2003
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1872
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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