Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_L05
(616 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 122 4e-29
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 122 4e-29
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom... 27 2.8
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 26 5.0
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.6
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 25 6.6
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy... 22 8.0
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 122 bits (294), Expect = 4e-29
Identities = 54/66 (81%), Positives = 60/66 (90%)
Frame = +3
Query: 171 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 350
LPFVFKAPIRPDLV VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGG
Sbjct: 24 LPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGG 83
Query: 351 THRSGQ 368
THRSGQ
Sbjct: 84 THRSGQ 89
Score = 81.8 bits (193), Expect = 7e-17
Identities = 40/81 (49%), Positives = 44/81 (54%)
Frame = +1
Query: 373 AFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPEL 552
AFGNMCR GRMFAPTK WR+WH ARGH IE+IPE+
Sbjct: 91 AFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASGVPSLLLARGHRIEEIPEV 150
Query: 553 PLVVADKVQEINKXKQAVIFL 615
PLVV D VQ K K+AV L
Sbjct: 151 PLVVDDAVQSFQKTKEAVALL 171
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 122 bits (294), Expect = 4e-29
Identities = 54/66 (81%), Positives = 60/66 (90%)
Frame = +3
Query: 171 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 350
LPFVFKAPIRPDLV VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGG
Sbjct: 24 LPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGG 83
Query: 351 THRSGQ 368
THRSGQ
Sbjct: 84 THRSGQ 89
Score = 81.8 bits (193), Expect = 7e-17
Identities = 40/81 (49%), Positives = 44/81 (54%)
Frame = +1
Query: 373 AFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPEL 552
AFGNMCR GRMFAPTK WR+WH ARGH IE+IPE+
Sbjct: 91 AFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLARGHRIEEIPEV 150
Query: 553 PLVVADKVQEINKXKQAVIFL 615
PLVV D VQ K K+AV L
Sbjct: 151 PLVVDDAVQSFQKTKEAVALL 171
>SPAC1296.03c |sxa2||serine carboxypeptidase
Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 26.6 bits (56), Expect = 2.8
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = -2
Query: 552 KLGNLFNNVSSSLNERWXASSSNGCCQGRSPLSEVDATVPAPPGLRGGEHTSTTT 388
KLG FNN SS+++E + N CQ S L+ + P R + ST+T
Sbjct: 253 KLGYYFNNTSSTISEEF--KKRNKECQYDSVLNRLTFPTEQYPIWRPEYNFSTST 305
>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 355
Score = 25.8 bits (54), Expect = 5.0
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 173 PVRIQGAHTSGPGQ*CSRFYVQELEAALLREQ 268
PV +QG HT G +F Q L A +L Q
Sbjct: 29 PVDVQGCHTLGERNDPKKFRFQTLVALMLSSQ 60
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 25.4 bits (53), Expect = 6.6
Identities = 14/58 (24%), Positives = 23/58 (39%)
Frame = -2
Query: 456 SEVDATVPAPPGLRGGEHTSTTTHVTEGXPDRTYGYHHHGHAEFGQQHVRYPMIRHWF 283
SE+ AT+P+ G R + + PD + Y G E V +R ++
Sbjct: 99 SELKATLPSLDGRRLSKRNAANHASHHRMPDESASYRTRGEYESSSPRVPQKSLRRYY 156
>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 606
Score = 25.4 bits (53), Expect = 6.6
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -2
Query: 153 CTVSLFSEYTDSKGRATDRLISLL 82
C V ++SEYT + G ++ L++L+
Sbjct: 492 CVVKIWSEYTKNTGESSPVLVALV 515
>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 794
Score = 21.8 bits (44), Expect(2) = 8.0
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = -2
Query: 354 GYHHHGHAEFGQQHV 310
G+HHH H + HV
Sbjct: 741 GHHHHHHHHYITGHV 755
Score = 21.4 bits (43), Expect(2) = 8.0
Identities = 7/26 (26%), Positives = 13/26 (50%)
Frame = -2
Query: 411 GEHTSTTTHVTEGXPDRTYGYHHHGH 334
G+ + + +G + + G HHH H
Sbjct: 721 GQQNANQSEEKQGGQNGSNGGHHHHH 746
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,388,616
Number of Sequences: 5004
Number of extensions: 46695
Number of successful extensions: 132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -