Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_L05
         (616 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)               124   4e-29
SB_42286| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)                    29   3.0  
SB_32622| Best HMM Match : Ank (HMM E-Value=2.2e-05)                   29   4.0  
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)                   29   4.0  
SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)            28   5.2  
SB_56201| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   9.1  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score =  124 bits (300), Expect = 4e-29
 Identities = 57/67 (85%), Positives = 61/67 (91%)
 Frame = +3

Query: 171 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 350
           LP VFKAPIRPDLVN VH +++KN RQPY V+K AGHQTSAESWGTGRAVARIPRVRGGG
Sbjct: 21  LPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQTSAESWGTGRAVARIPRVRGGG 80

Query: 351 THRSGQG 371
           THRSGQG
Sbjct: 81  THRSGQG 87



 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 37/81 (45%), Positives = 44/81 (54%)
 Frame = +1

Query: 373 AFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPEL 552
           AFGNMCRGGRMFAPTK WR+WH                          ARGH IEKI E+
Sbjct: 88  AFGNMCRGGRMFAPTKTWRKWHTKVNVQQRRFAVCSALAASALPALIMARGHRIEKIAEV 147

Query: 553 PLVVADKVQEINKXKQAVIFL 615
           PLV++D ++ + K   AV  L
Sbjct: 148 PLVISDAIESVTKTSAAVKLL 168


>SB_42286| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1820

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 477 CQGRSPLSEVDATVPAPPGLRGGEHTSTTT 388
           C GR+P++  + TV  P GL+ GE  +  T
Sbjct: 832 CTGRNPINVSEKTVTLPFGLKAGEVVAKVT 861


>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2325

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 204  DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARI 329
            D+ NDV ++++  +  PY +     H T  E   TG+ +A++
Sbjct: 2034 DVTNDVTINVTDVNEAPYDIRLVPSHVTVKEDIRTGQCIAQV 2075


>SB_32622| Best HMM Match : Ank (HMM E-Value=2.2e-05)
          Length = 509

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/59 (28%), Positives = 21/59 (35%)
 Frame = -2

Query: 489 SNGCCQGRSPLSEVDATVPAPPGLRGGEHTSTTTHVTEGXPDRTYGYHHHGHAEFGQQH 313
           S+     RS       TV AP     G  T+T T  ++   D     H H H     QH
Sbjct: 314 SSSTITSRSQHQHDHVTVTAPTRSSHGHSTNTITSRSQHQHDHVTAQHQHDHVTDQHQH 372


>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
          Length = 453

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = -2

Query: 402 TSTTTHVTEGXPDRTYGYHHHGHAEFGQQHVRYPMIRH 289
           T+ TT +T       Y YHHH H      H  +   RH
Sbjct: 292 TTITTAITITTATPPYRYHHHHHHRHHHHHHHHHHQRH 329


>SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)
          Length = 715

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +3

Query: 198 RPDLVNDVHVSMSKNSRQPYC-VSKEAGHQTSAESWGTGRAV 320
           RP       +SM K  R+PY  + +E GH+    S  T R V
Sbjct: 156 RPGCDTHEKISMEKRKREPYLELIRETGHERQRRSVSTERNV 197


>SB_56201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 796

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
 Frame = -2

Query: 480 CCQGRSPLSEVDATVPAPPGLRGGEHTSTTTHVTEGXPDRTY---GYHHHGHAEF 325
           C  G+ P+S   A +P  PG       S T+ V    P  T+    +  HG   F
Sbjct: 309 CLAGKVPISPDLAHIPRTPGETSATSGSETSQVRTSSPKTTFPGINWPRHGPQAF 363


>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 381  TEGXPDRTYGYHHHGHAEFGQQHVRYPMIRHWFG 280
            T+G  +R Y Y    +  F Q  V + ++RHW G
Sbjct: 3823 TQGQHERNY-YVSQYYLYFSQDKVNFAILRHWNG 3855


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,259,494
Number of Sequences: 59808
Number of extensions: 429197
Number of successful extensions: 1189
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1182
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)