Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_L05
         (616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...    99   1e-21
U28729-6|AAA68292.1|  549|Caenorhabditis elegans Phosphodiestera...    30   1.1  
U28729-5|AAO38607.1|  674|Caenorhabditis elegans Phosphodiestera...    30   1.1  
U28729-4|AAN60496.1|  599|Caenorhabditis elegans Phosphodiestera...    30   1.1  
U28729-3|AAO38608.1|  612|Caenorhabditis elegans Phosphodiestera...    30   1.1  
U28729-2|AAK77625.1|  626|Caenorhabditis elegans Phosphodiestera...    30   1.1  
U28729-1|ABB88209.1|  673|Caenorhabditis elegans Phosphodiestera...    30   1.1  
U40948-1|AAA81727.1|  730|Caenorhabditis elegans Gliotactin (dro...    30   1.5  
AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    29   3.5  
AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protei...    29   3.5  
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    28   6.1  
U70845-2|AAB09100.1|  102|Caenorhabditis elegans Hypothetical pr...    23   6.4  
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    27   8.1  
U42439-8|AAM98032.1|  431|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =   99 bits (238), Expect = 1e-21
 Identities = 46/67 (68%), Positives = 54/67 (80%)
 Frame = +3

Query: 171 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 350
           LP VF+ PIRPDLV+ +   + +N RQ + V+ +AG Q SAESWGTGRAVARIPRVRGGG
Sbjct: 23  LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAESWGTGRAVARIPRVRGGG 82

Query: 351 THRSGQG 371
           THRSGQG
Sbjct: 83  THRSGQG 89



 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 38/81 (46%), Positives = 48/81 (59%)
 Frame = +1

Query: 373 AFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPEL 552
           AFGNMCRGG MFAP K +RRWH                         QARGH+I+++ E+
Sbjct: 90  AFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSAIAASGIPALLQARGHVIDQVAEV 149

Query: 553 PLVVADKVQEINKXKQAVIFL 615
           PLVV+DKV+   K K+AV+FL
Sbjct: 150 PLVVSDKVESFRKTKEAVVFL 170


>U28729-6|AAA68292.1|  549|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoforma protein.
          Length = 549

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 83  SSEMSLSVARPLLSVYSEKSETVQGCSQAPPVRIQGAHTSGP 208
           SS+    V++ L++ Y +K E         P  +QG  TSGP
Sbjct: 131 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSGP 172


>U28729-5|AAO38607.1|  674|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformd protein.
          Length = 674

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 83  SSEMSLSVARPLLSVYSEKSETVQGCSQAPPVRIQGAHTSGP 208
           SS+    V++ L++ Y +K E         P  +QG  TSGP
Sbjct: 256 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSGP 297


>U28729-4|AAN60496.1|  599|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformc protein.
          Length = 599

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 83  SSEMSLSVARPLLSVYSEKSETVQGCSQAPPVRIQGAHTSGP 208
           SS+    V++ L++ Y +K E         P  +QG  TSGP
Sbjct: 181 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSGP 222


>U28729-3|AAO38608.1|  612|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoforme protein.
          Length = 612

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 83  SSEMSLSVARPLLSVYSEKSETVQGCSQAPPVRIQGAHTSGP 208
           SS+    V++ L++ Y +K E         P  +QG  TSGP
Sbjct: 194 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSGP 235


>U28729-2|AAK77625.1|  626|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformb protein.
          Length = 626

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 83  SSEMSLSVARPLLSVYSEKSETVQGCSQAPPVRIQGAHTSGP 208
           SS+    V++ L++ Y +K E         P  +QG  TSGP
Sbjct: 208 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSGP 249


>U28729-1|ABB88209.1|  673|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformg protein.
          Length = 673

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 83  SSEMSLSVARPLLSVYSEKSETVQGCSQAPPVRIQGAHTSGP 208
           SS+    V++ L++ Y +K E         P  +QG  TSGP
Sbjct: 255 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSGP 296


>U40948-1|AAA81727.1|  730|Caenorhabditis elegans Gliotactin
           (drosophila neuroligin-like) homolog protein 1 protein.
          Length = 730

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = -2

Query: 429 PPGLRGGEHTSTTTHVTEGXPD--RTYGYHHHGHAEFGQQHVRYPMIRHWF 283
           P GLRG   T T  + +    +  R + YH + + +F      Y   RHW+
Sbjct: 550 PIGLRGINFTDTDRNASRTFSNIIRRFSYHQNPNFQFDGSWAAYEPRRHWY 600


>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/60 (31%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
 Frame = -2

Query: 435 PAPPGLRGGEHTSTTTHVTEGXPDRTYGYHHHGH---AEFGQQHVRYPMIRHWFGDQPPC 265
           P  PG R G H     H  +G     +G+HHH H     F   H  +     W    PPC
Sbjct: 388 PHCPG-RHGHHGPPHHHHHDGRSPSRHGHHHHHHHGCRPFPPHHGHHHFPPFW----PPC 442


>AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protein
            protein.
          Length = 1198

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 450  VDATVPAPPGLRGGEHTSTTTHVTEGXPDRT-YGYHHHGHAEFG 322
            V+A++P    L  G+H S   H  EG  D + + +HHH    FG
Sbjct: 878  VEASLPFYEKLWYGDHASHQGH--EGHGDHSGHNHHHHKETSFG 919


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 155 PAPSHSSLNTPTVKVGLPIDSFRYFSEAIPPKYT 54
           P  S +S N PT+K+ L I+   YF     PK T
Sbjct: 184 PTTSSTSTNAPTIKITLNIND-AYFDSNCAPKCT 216


>U70845-2|AAB09100.1|  102|Caenorhabditis elegans Hypothetical
           protein F22H10.2 protein.
          Length = 102

 Score = 23.4 bits (48), Expect(2) = 6.4
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -2

Query: 351 YHHHGHAEFGQQH 313
           +HHHG   FG  H
Sbjct: 84  HHHHGGHHFGHHH 96



 Score = 23.0 bits (47), Expect(2) = 6.4
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
 Frame = -2

Query: 432 APPGLRGGE--HTSTTTHVTEGXPDRTYGYHHHGH 334
           APP + GG   +   T HV         G HHHGH
Sbjct: 33  APPPVFGGPGGYAPPTVHVHNN------GGHHHGH 61


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical
           protein F57F4.4 protein.
          Length = 2090

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = +2

Query: 278 SPNQC--RIMGYRTCCCPNSAC 337
           S N+C  +  G+ TCCC + AC
Sbjct: 866 STNRCHQQEQGFETCCCDSDAC 887


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
           interacting proteinprotein 1 protein.
          Length = 2153

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = +2

Query: 278 SPNQC--RIMGYRTCCCPNSAC 337
           S N+C  +  G+ TCCC + AC
Sbjct: 866 STNRCHQQEQGFETCCCDSDAC 887


>U42439-8|AAM98032.1|  431|Caenorhabditis elegans Hypothetical
           protein F19C7.8a protein.
          Length = 431

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 360 TYGYHHHGHAEFGQQHVRYPMIRHWFGDQPP 268
           T+GYHH+ HA   Q  +   + R      PP
Sbjct: 67  THGYHHNPHARLSQPDIHSAIYRPHHYYSPP 97


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,827,243
Number of Sequences: 27780
Number of extensions: 299782
Number of successful extensions: 946
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)