Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_L04
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   147   1e-36
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    41   2e-04
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    32   0.083
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce...    29   0.77 
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   5.5  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    25   7.2  
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    25   9.5  
SPAC869.10c |||proline specific permease |Schizosaccharomyces po...    25   9.5  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  147 bits (356), Expect = 1e-36
 Identities = 75/150 (50%), Positives = 91/150 (60%), Gaps = 1/150 (0%)
 Frame = +3

Query: 207 IQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILXKYRP 386
           IQP RDLSRFV+WP+YIR+QR++ +L  RLKVPP I QF +TLDK TA  +FK+L KYRP
Sbjct: 40  IQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKNTATQVFKLLNKYRP 99

Query: 387 ETXXXXXXXXXXXXXXXXXXXD-EPPPKRPNTIRSGTNXXXXXXXXXXXXXXXIAHDVDP 563
           ET                     +   K+P  ++ G N               IA DVDP
Sbjct: 100 ETAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVALIEAKKAKLVLIASDVDP 159

Query: 564 IELVLFLPALCRKMGVPYCIVKGKXRLGAL 653
           IELV+FLPALC+KMGVPY IVK K RLG +
Sbjct: 160 IELVVFLPALCKKMGVPYAIVKNKARLGTV 189



 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 158 NPLFEKRPKNFAIGQ 202
           NPLF  RP++F IGQ
Sbjct: 24  NPLFVSRPRSFGIGQ 38


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 20/56 (35%), Positives = 25/56 (44%)
 Frame = +3

Query: 480 IRSGTNXXXXXXXXXXXXXXXIAHDVDPIELVLFLPALCRKMGVPYCIVKGKXRLG 647
           +R G N               +A D +PIE++L LP LC    VPY  V  K  LG
Sbjct: 32  LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALG 87


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 31.9 bits (69), Expect = 0.083
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 543 IAHDVDPIELVLFLPALCRKMGVPYCIVKGKXRLG 647
           +A D+ P++++  +P LC    VPY     K  LG
Sbjct: 75  LAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLG 109


>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 851

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 19/68 (27%), Positives = 29/68 (42%)
 Frame = -3

Query: 255 YTWAILQIWTSHELAEWP*PIAKFFGLFSKRGFTIFLGSTFLTTNGAAATFFPTFFLGFX 76
           Y W   Q+  S E  E      +FF L   +   +  GS + T NG+    +  FFL   
Sbjct: 428 YIW--FQLILSREFTEKSVSAHEFFSLEDVQHILLSYGSDYFTNNGSNPVMY--FFLLML 483

Query: 75  CTIVEQLL 52
           C + E+ +
Sbjct: 484 CGLYERAI 491


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -3

Query: 501  LCLCRIGWC 475
            LCLC IGWC
Sbjct: 2326 LCLCYIGWC 2334


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 257 PHPAPEGCTSASSESAPSDQPIYPDTGQDY 346
           PHP      SA S ++P   P+ P T +DY
Sbjct: 355 PHPRVFSANSAFSTTSPP--PLTPSTSRDY 382


>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 184 ELCYWSGPFSQLVTC 228
           +L  W GP S+LV+C
Sbjct: 438 DLLQWKGPISELVSC 452


>SPAC869.10c |||proline specific permease |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 552

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 162 GFTIFLGSTFLTTNGAAATFFPTFFL 85
           GFT+F+G TF   N  AA      FL
Sbjct: 472 GFTVFVGHTFTAGNFIAAYITLPIFL 497


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,315,695
Number of Sequences: 5004
Number of extensions: 40663
Number of successful extensions: 115
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)