Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_L04
(653 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.) 169 1e-42
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24) 96 3e-20
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27) 42 3e-04
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15) 33 0.20
SB_57776| Best HMM Match : EB (HMM E-Value=2.9) 31 1.1
SB_46996| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05) 29 3.3
SB_18728| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 169 bits (412), Expect = 1e-42
Identities = 79/147 (53%), Positives = 96/147 (65%)
Frame = +3
Query: 207 IQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILXKYRP 386
IQP RDLSRFVRWP+Y+++QRQK++L +RLKVPP INQFTQ LD+ + LFK+L KYRP
Sbjct: 45 IQPKRDLSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALDRQSTVQLFKLLHKYRP 104
Query: 387 ETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTIRSGTNXXXXXXXXXXXXXXXIAHDVDPI 566
ET +E P K+P ++ G N IAHDVDPI
Sbjct: 105 ETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQLVVIAHDVDPI 164
Query: 567 ELVLFLPALCRKMGVPYCIVKGKXRLG 647
E+V++LPALCRKM VPYCIVKGK RLG
Sbjct: 165 EIVVWLPALCRKMQVPYCIVKGKARLG 191
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +2
Query: 158 NPLFEKRPKNFAIG 199
NPL EKRP+NF IG
Sbjct: 29 NPLIEKRPRNFGIG 42
>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
Length = 172
Score = 95.9 bits (228), Expect = 3e-20
Identities = 46/97 (47%), Positives = 54/97 (55%)
Frame = +3
Query: 357 LFKILXKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTIRSGTNXXXXXXXXXXXXX 536
LFK+L KYRPET +E P K+P ++ G N
Sbjct: 4 LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQL 63
Query: 537 XXIAHDVDPIELVLFLPALCRKMGVPYCIVKGKXRLG 647
IAHDVDPIE+V++LPALCRKM VPYCIVKGK RLG
Sbjct: 64 VVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLG 100
>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
Length = 187
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = +3
Query: 480 IRSGTNXXXXXXXXXXXXXXXIAHDVDPIELVLFLPALCRKMGVPYCIVKGKXRLG 647
+R G N +A D +P+E++L LP LC VPY V+ K LG
Sbjct: 94 LRKGANEATKCLNRGIAEFIVMAADTEPLEILLHLPLLCEDKNVPYVFVRSKAALG 149
>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
Length = 544
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/56 (25%), Positives = 23/56 (41%)
Frame = +3
Query: 468 RPNTIRSGTNXXXXXXXXXXXXXXXIAHDVDPIELVLFLPALCRKMGVPYCIVKGK 635
+ T+R G +A DV PI+++ +P +C +PY V K
Sbjct: 95 KAKTLRRGVKEVVKALRKGEKGFVILAGDVSPIDVISHIPVMCEDSKIPYAYVPSK 150
>SB_57776| Best HMM Match : EB (HMM E-Value=2.9)
Length = 669
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 151 DRESSLREEAKELCYWSGPFSQLVT 225
DR ++ E KE+CYW F VT
Sbjct: 187 DRRKNMEERHKEMCYWGHKFETYVT 211
>SB_46996| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 227
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 151 DRESSLREEAKELCYWSGPFSQLVT 225
DR ++ E KE+CYW F VT
Sbjct: 137 DRRKNMEERHKEMCYWGHKFETYVT 161
>SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)
Length = 212
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 470 PLWWRLIFLGNLSFSSFXQPLFPG 399
P WW ++F+G + FS L+PG
Sbjct: 56 PKWWFMLFIGTIVFSIGYLVLYPG 79
>SB_18728| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 182
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -2
Query: 265 WMRIYLGHLTNLDKSRVG*MALTNSKVLWPLLEER 161
W L +L+ S VG +AL +S V WPLL ER
Sbjct: 21 WELESLENLSPAVMSSVGMLALNSSDVSWPLLVER 55
>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 655
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +2
Query: 281 TSASSESAPSDQPIYPDTG 337
T+ASSE+APS P PD G
Sbjct: 43 TAASSEAAPSSAPSMPDYG 61
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,115,489
Number of Sequences: 59808
Number of extensions: 329599
Number of successful extensions: 840
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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