Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_L04
(653 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 155 3e-38
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 141 5e-34
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 94 7e-20
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 75 4e-14
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 40 0.002
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 33 0.18
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 31 0.54
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 28 6.7
AF040660-8|AAN65288.1| 594|Caenorhabditis elegans Hypothetical ... 28 6.7
AF040660-6|AAN65286.1| 541|Caenorhabditis elegans Hypothetical ... 28 6.7
AF040660-5|AAC71149.1| 651|Caenorhabditis elegans Hypothetical ... 28 6.7
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 155 bits (375), Expect = 3e-38
Identities = 74/149 (49%), Positives = 91/149 (61%)
Frame = +3
Query: 207 IQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILXKYRP 386
IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L KYRP
Sbjct: 46 IQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRP 105
Query: 387 ETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTIRSGTNXXXXXXXXXXXXXXXIAHDVDPI 566
E+ E KRPNT+R G N IAHDV+P+
Sbjct: 106 ESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVETRRAQLVLIAHDVNPL 165
Query: 567 ELVLFLPALCRKMGVPYCIVKGKXRLGAL 653
E+VL LPALCRK VPY I+KGK LG +
Sbjct: 166 EIVLHLPALCRKYNVPYAIIKGKASLGTV 194
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +2
Query: 158 NPLFEKRPKNFAIGQ 202
NPLFEKR +NF IGQ
Sbjct: 30 NPLFEKRARNFNIGQ 44
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 141 bits (341), Expect = 5e-34
Identities = 73/149 (48%), Positives = 90/149 (60%)
Frame = +3
Query: 207 IQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILXKYRP 386
IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L KYRP
Sbjct: 46 IQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRP 105
Query: 387 ETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTIRSGTNXXXXXXXXXXXXXXXIAHDVDPI 566
E+ KRPNT+R G N IAHDV+P+
Sbjct: 106 ESTEV--------------------TKRPNTVRHGVNTITRLVETRRAQLVLIAHDVNPL 145
Query: 567 ELVLFLPALCRKMGVPYCIVKGKXRLGAL 653
E+VL LPALCRK VPY I+KGK LG +
Sbjct: 146 EIVLHLPALCRKYNVPYAIIKGKASLGTV 174
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +2
Query: 158 NPLFEKRPKNFAIGQ 202
NPLFEKR +NF IGQ
Sbjct: 30 NPLFEKRARNFNIGQ 44
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 94.3 bits (224), Expect = 7e-20
Identities = 40/62 (64%), Positives = 51/62 (82%)
Frame = +3
Query: 207 IQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILXKYRP 386
IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L KYRP
Sbjct: 149 IQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSHSARQAFKLLDKYRP 208
Query: 387 ET 392
E+
Sbjct: 209 ES 210
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +2
Query: 158 NPLFEKRPKNFAIGQ 202
NPLFEKR +NF IGQ
Sbjct: 133 NPLFEKRARNFNIGQ 147
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 74.9 bits (176), Expect = 4e-14
Identities = 31/44 (70%), Positives = 38/44 (86%)
Frame = +3
Query: 207 IQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 338
IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 149 IQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +2
Query: 158 NPLFEKRPKNFAIGQ 202
NPLFEKR +NF IGQ
Sbjct: 133 NPLFEKRARNFNIGQ 147
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +3
Query: 480 IRSGTNXXXXXXXXXXXXXXXIAHDVDPIELVLFLPALCRKMGVPYCIVKGKXRLG 647
++ G N +A D +P+E++L LP LC VPY V+ K LG
Sbjct: 35 LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALG 90
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = -1
Query: 437 LSFSSFXQPLFPGCFSLRPVFXQNLEKA-LSCSLVQCLGKLV 315
LSF F QP+ C +++P F N+EKA + C ++Q G+++
Sbjct: 165 LSFP-FSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 31.5 bits (68), Expect = 0.54
Identities = 13/57 (22%), Positives = 25/57 (43%)
Frame = +3
Query: 477 TIRSGTNXXXXXXXXXXXXXXXIAHDVDPIELVLFLPALCRKMGVPYCIVKGKXRLG 647
T+R G +A +V PI++ +P +C + +PY + + +LG
Sbjct: 68 TLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLG 124
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1
Query: 307 LRSTNLPRHWTRLQLRA 357
+RSTNL +WT LQLRA
Sbjct: 65 VRSTNLDTNWTWLQLRA 81
>AF040660-8|AAN65288.1| 594|Caenorhabditis elegans Hypothetical
protein W05G11.6d protein.
Length = 594
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -1
Query: 503 DCVCAGSDGVGPLWWRLIFLGNLSFSSFXQPLFPGCFSLRPVF 375
D VC DGV P+ + ++ F FPGC + RP++
Sbjct: 118 DSVCHTPDGVRPIMGQ--WMSEEQFGVELDSRFPGCMAGRPMY 158
>AF040660-6|AAN65286.1| 541|Caenorhabditis elegans Hypothetical
protein W05G11.6b protein.
Length = 541
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -1
Query: 503 DCVCAGSDGVGPLWWRLIFLGNLSFSSFXQPLFPGCFSLRPVF 375
D VC DGV P+ + ++ F FPGC + RP++
Sbjct: 8 DSVCHTPDGVRPIMGQ--WMSEEQFGVELDSRFPGCMAGRPMY 48
>AF040660-5|AAC71149.1| 651|Caenorhabditis elegans Hypothetical
protein W05G11.6a protein.
Length = 651
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -1
Query: 503 DCVCAGSDGVGPLWWRLIFLGNLSFSSFXQPLFPGCFSLRPVF 375
D VC DGV P+ + ++ F FPGC + RP++
Sbjct: 118 DSVCHTPDGVRPIMGQ--WMSEEQFGVELDSRFPGCMAGRPMY 158
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,139,840
Number of Sequences: 27780
Number of extensions: 240172
Number of successful extensions: 660
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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