Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_L04
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ...   154   6e-38
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)           154   6e-38
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45...    36   0.024
At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45...    35   0.041
At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45...    35   0.041
At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45...    35   0.041
At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45...    35   0.054
At2g31760.1 68415.m03878 zinc finger protein-related contains lo...    30   1.2  
At5g64930.1 68418.m08167 CPR5 protein, putative Constitutive exp...    27   8.2  

>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
           RIBOSOMAL PROTEIN L7A - Oryza sativa,
           SWISSPROT:RL7A_ORYSA
          Length = 256

 Score =  154 bits (373), Expect = 6e-38
 Identities = 77/150 (51%), Positives = 94/150 (62%)
 Frame = +3

Query: 204 AIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILXKYR 383
           A+ P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLDK  A  LFKIL KYR
Sbjct: 35  ALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYR 94

Query: 384 PETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTIRSGTNXXXXXXXXXXXXXXXIAHDVDP 563
           PE                         K+P  ++ G N               IAHDVDP
Sbjct: 95  PE-DKAAKKERLLNKAQAEAEGKPAESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDP 153

Query: 564 IELVLFLPALCRKMGVPYCIVKGKXRLGAL 653
           IELV++LPALCRKM VPYCIVKGK RLGA+
Sbjct: 154 IELVVWLPALCRKMEVPYCIVKGKSRLGAV 183



 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +2

Query: 158 NPLFEKRPKNFAIG 199
           NPLFE+RPK F IG
Sbjct: 20  NPLFERRPKQFGIG 33


>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
          Length = 257

 Score =  154 bits (373), Expect = 6e-38
 Identities = 76/150 (50%), Positives = 94/150 (62%)
 Frame = +3

Query: 204 AIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILXKYR 383
           A+ P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLDK  A  LFK+L KYR
Sbjct: 36  ALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKVLLKYR 95

Query: 384 PETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTIRSGTNXXXXXXXXXXXXXXXIAHDVDP 563
           PE                         K+P  ++ G N               IAHDVDP
Sbjct: 96  PEDKAAKKERLVKKAQAEAEGKPS-ESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDP 154

Query: 564 IELVLFLPALCRKMGVPYCIVKGKXRLGAL 653
           IELV++LPALCRKM VPYCIVKGK RLGA+
Sbjct: 155 IELVVWLPALCRKMEVPYCIVKGKSRLGAV 184



 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +2

Query: 158 NPLFEKRPKNFAIG 199
           NPLFE+RPK F IG
Sbjct: 21  NPLFERRPKQFGIG 34


>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 156

 Score = 35.9 bits (79), Expect = 0.024
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 543 IAHDVDPIELVLFLPALCRKMGVPYCIVKGKXRL 644
           IA ++ PI+++  LP LC + GVPY  V  K  L
Sbjct: 72  IAGNISPIDVITHLPILCEEAGVPYVYVPSKEDL 105


>At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 128

 Score = 35.1 bits (77), Expect = 0.041
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = +3

Query: 480 IRSGTNXXXXXXXXXXXXXXXIAHDVDPIELVLFLPALCRKMGVPYCIVKGKXRLG 647
           ++ G N               +A D +P+E++L LP L     VPY  V  K  LG
Sbjct: 35  LKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALG 90


>At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 128

 Score = 35.1 bits (77), Expect = 0.041
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = +3

Query: 480 IRSGTNXXXXXXXXXXXXXXXIAHDVDPIELVLFLPALCRKMGVPYCIVKGKXRLG 647
           ++ G N               +A D +P+E++L LP L     VPY  V  K  LG
Sbjct: 35  LKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALG 90


>At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 128

 Score = 35.1 bits (77), Expect = 0.041
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = +3

Query: 480 IRSGTNXXXXXXXXXXXXXXXIAHDVDPIELVLFLPALCRKMGVPYCIVKGKXRLG 647
           ++ G N               +A D +P+E++L LP L     VPY  V  K  LG
Sbjct: 35  LKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALG 90


>At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 160

 Score = 34.7 bits (76), Expect = 0.054
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +3

Query: 543 IAHDVDPIELVLFLPALCRKMGVPYCIVKGKXRLG 647
           +A D +P+E++L LP L     VPY  V  K  LG
Sbjct: 88  MAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALG 122


>At2g31760.1 68415.m03878 zinc finger protein-related contains low
           similarity to zinc finger proteins and Pfam PF01485: IBR
           domain
          Length = 514

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = -1

Query: 611 YTHFTA*RWQEENQLNRINIMSDDHKLRLLLXDQLGDCVC 492
           YTH+   RW E NQ +R+  MSD  K + +   QL D  C
Sbjct: 340 YTHYYV-RWVE-NQSSRLKAMSDLEKFQSVQLKQLSDNQC 377


>At5g64930.1 68418.m08167 CPR5 protein, putative Constitutive
           expressor of Pathogensis Related genes 5 (cpr5);
           regulator of disease resistance and senescence (Plant J.
           (2001)26(4)409-420.
          Length = 564

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/55 (29%), Positives = 21/55 (38%)
 Frame = -3

Query: 186 FFGLFSKRGFTIFLGSTFLTTNGAAATFFPTFFLGFXCTIVEQLLIQRFKGHEKI 22
           FFG+     FT FL      T       F   FLG  C +  +L +    G  K+
Sbjct: 418 FFGVLMIIVFTYFLNKRSSGTKQTMPISFIVLFLGIFCGVSGKLCVDTLGGDGKL 472


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,596,379
Number of Sequences: 28952
Number of extensions: 231196
Number of successful extensions: 655
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)