Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_K23
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...   155   5e-39
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    27   2.2  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    27   2.9  
SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomy...    26   3.9  
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    25   9.0  

>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score =  155 bits (376), Expect = 5e-39
 Identities = 79/148 (53%), Positives = 107/148 (72%), Gaps = 3/148 (2%)
 Frame = +1

Query: 34  KIIKASGAEADSFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 207
           KI+K S ++    +  ++Q L +LE++S D+  +LR L IT A+E+E+   KK+I+++VP
Sbjct: 6   KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65

Query: 208 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSXTLTSV 387
            P LKAF K Q RL RELEKKF+ +HV+F+  R+ILPKP  K+RV   QKRPRS TLT+V
Sbjct: 66  QPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAV 123

Query: 388 YNAILEDLVFPAEIVGKRIRXQV-GRLT 468
           +NAILED+VFP EI+GKR R    GR T
Sbjct: 124 HNAILEDIVFPTEIIGKRTRQATDGRKT 151



 Score = 54.4 bits (125), Expect = 1e-08
 Identities = 23/42 (54%), Positives = 30/42 (71%)
 Frame = +2

Query: 458 DGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 583
           DG + IKV LD     T+++K+ +F SVY KLTG+ VTFEFP
Sbjct: 147 DGRKTIKVFLDNRDANTVDYKLGSFSSVYHKLTGKNVTFEFP 188


>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = -2

Query: 326 LGLGRILRSPTKTTCLPLNFFSSSRTS 246
           LG   I +SPTK    PLNFF SSR S
Sbjct: 33  LGTNVIAQSPTK----PLNFFHSSRWS 55


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +1

Query: 196 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 288
           +++P  K   F+KI+  +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130


>SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 271

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +1

Query: 19  STMSTKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELH 177
           ST++ K++ AS  E   F   + Q  + +  +   KA+   L     KE+ LH
Sbjct: 124 STLTAKLLVASFGETIPFSLPLGQLSINVPPSLYHKAEFSPLDELSPKEVILH 176


>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 354 KEATLXDIDLCVQCYPRGLGLPC 422
           ++AT+ ++D C  C  RGL + C
Sbjct: 110 RKATIRNVDYCSACGGRGLFICC 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,443,868
Number of Sequences: 5004
Number of extensions: 48419
Number of successful extensions: 156
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)