Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_K23
(627 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75714-1|CAB00058.1| 194|Caenorhabditis elegans Hypothetical pr... 165 3e-41
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 29 3.6
AY204196-1|AAO39199.1| 412|Caenorhabditis elegans nuclear recep... 29 3.6
AC006777-1|ABB51174.1| 424|Caenorhabditis elegans Nuclear hormo... 29 3.6
Z49938-5|CAD31752.1| 1467|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z49938-1|CAD59171.1| 1216|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z46811-2|CAD31753.1| 1467|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical pr... 28 6.3
U23179-7|AAC46721.1| 782|Caenorhabditis elegans Hypothetical pr... 28 6.3
AF316540-1|AAK01633.1| 1487|Caenorhabditis elegans PTP-3B protein. 28 6.3
AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein. 28 6.3
Z78420-2|CAB01710.3| 738|Caenorhabditis elegans Hypothetical pr... 27 8.3
>Z75714-1|CAB00058.1| 194|Caenorhabditis elegans Hypothetical
protein ZC434.2 protein.
Length = 194
Score = 165 bits (400), Expect = 3e-41
Identities = 77/142 (54%), Positives = 108/142 (76%), Gaps = 1/142 (0%)
Frame = +1
Query: 34 KIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMP 213
K++K+ G E +SQAL++LETN D+++QL+ELYI KE+EL NK +IIIYVP+P
Sbjct: 7 KLLKSDGKVVSEIEKQVSQALIDLETNDDVQSQLKELYIVGVKEVELGNKSAIIIYVPVP 66
Query: 214 KLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRV-ANKQKRPRSXTLTSVY 390
+LKAF KI LVRELEKKF G+ ++ + R+ILPKP ++ KQKRPRS TLT+V+
Sbjct: 67 QLKAFHKIHPALVRELEKKFGGRDILILAKRRILPKPQRGSKARPQKQKRPRSRTLTAVH 126
Query: 391 NAILEDLVFPAEIVGKRIRXQV 456
+A L++LV+PAE+VG+RIR ++
Sbjct: 127 DAWLDELVYPAEVVGRRIRVKL 148
Score = 72.1 bits (169), Expect = 3e-13
Identities = 29/46 (63%), Positives = 38/46 (82%)
Frame = +2
Query: 452 KLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFPEP 589
KLDG ++ KVHLDK+ QT + HK+ F SVY+KLTG++VTFEFP+P
Sbjct: 147 KLDGKKVYKVHLDKSHQTNVGHKIGVFASVYRKLTGKDVTFEFPDP 192
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +2
Query: 98 SNSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSSMCR 208
S+SK T F SF Q ++K YT S SSS R
Sbjct: 376 SSSKKTTKEDDFFDSFETQPVQKSRYTASSSSSSTSR 412
>AY204196-1|AAO39199.1| 412|Caenorhabditis elegans nuclear receptor
NHR-110 protein.
Length = 412
Score = 28.7 bits (61), Expect = 3.6
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = -1
Query: 498 WFLSKCTLMSCEPSNLXPDALAYDLSREDQVLEDS 394
WF C L C + P+ + YD + + +L+ S
Sbjct: 72 WFCKTCRLTRCLSIGMSPENIQYDRDKFESILKSS 106
>AC006777-1|ABB51174.1| 424|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 110, isoform b protein.
Length = 424
Score = 28.7 bits (61), Expect = 3.6
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = -1
Query: 498 WFLSKCTLMSCEPSNLXPDALAYDLSREDQVLEDS 394
WF C L C + P+ + YD + + +L+ S
Sbjct: 84 WFCKTCRLTRCLSIGMSPENIQYDRDKFESILKSS 118
>Z49938-5|CAD31752.1| 1467|Caenorhabditis elegans Hypothetical
protein C09D8.1b protein.
Length = 1467
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -2
Query: 440 RLPTISAGKTKSSRIALYTEVNVXERGLFCLLATR 336
+LP +S K R A+ +++N + FC+LA +
Sbjct: 392 QLPVVSIDKENPKRFAVVSDLNAHKPYAFCVLAVK 426
>Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical protein
C09D8.1a protein.
Length = 2180
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -2
Query: 440 RLPTISAGKTKSSRIALYTEVNVXERGLFCLLATR 336
+LP +S K R A+ +++N + FC+LA +
Sbjct: 1105 QLPVVSIDKENPKRFAVVSDLNAHKPYAFCVLAVK 1139
>Z49938-1|CAD59171.1| 1216|Caenorhabditis elegans Hypothetical
protein C09D8.1c protein.
Length = 1216
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -2
Query: 440 RLPTISAGKTKSSRIALYTEVNVXERGLFCLLATR 336
+LP +S K R A+ +++N + FC+LA +
Sbjct: 141 QLPVVSIDKENPKRFAVVSDLNAHKPYAFCVLAVK 175
>Z46811-2|CAD31753.1| 1467|Caenorhabditis elegans Hypothetical
protein C09D8.1b protein.
Length = 1467
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -2
Query: 440 RLPTISAGKTKSSRIALYTEVNVXERGLFCLLATR 336
+LP +S K R A+ +++N + FC+LA +
Sbjct: 392 QLPVVSIDKENPKRFAVVSDLNAHKPYAFCVLAVK 426
>Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical protein
C09D8.1a protein.
Length = 2180
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -2
Query: 440 RLPTISAGKTKSSRIALYTEVNVXERGLFCLLATR 336
+LP +S K R A+ +++N + FC+LA +
Sbjct: 1105 QLPVVSIDKENPKRFAVVSDLNAHKPYAFCVLAVK 1139
>U23179-7|AAC46721.1| 782|Caenorhabditis elegans Hypothetical
protein C27D6.1 protein.
Length = 782
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +1
Query: 10 VKLSTMSTKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKS 189
+K + + K I+A + T S+ L ELE Q +E + K++E+E+ NK+
Sbjct: 242 LKANEKARKEIEAEAEKWKDRATRNSKRLPELELELAETVQAKEEWQVKSQEMEIQNKQL 301
Query: 190 I 192
+
Sbjct: 302 V 302
>AF316540-1|AAK01633.1| 1487|Caenorhabditis elegans PTP-3B protein.
Length = 1487
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -2
Query: 440 RLPTISAGKTKSSRIALYTEVNVXERGLFCLLATR 336
+LP +S K R A+ +++N + FC+LA +
Sbjct: 392 QLPVVSIDKENPKRFAVVSDLNAHKPYAFCVLAVK 426
>AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein.
Length = 2200
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -2
Query: 440 RLPTISAGKTKSSRIALYTEVNVXERGLFCLLATR 336
+LP +S K R A+ +++N + FC+LA +
Sbjct: 1105 QLPVVSIDKENPKRFAVVSDLNAHKPYAFCVLAVK 1139
>Z78420-2|CAB01710.3| 738|Caenorhabditis elegans Hypothetical
protein F45H11.3 protein.
Length = 738
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -1
Query: 120 VGVGFEFDQRLRDRGLEGIRLSTARFDDL 34
V VGFE RLRD+GL +LS +D L
Sbjct: 522 VEVGFENWIRLRDKGLSHSQLSCQLYDTL 550
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,574,141
Number of Sequences: 27780
Number of extensions: 276358
Number of successful extensions: 769
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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