Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_K23
(627 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 139 1e-33
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 139 1e-33
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 135 3e-32
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila... 128 2e-30
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila... 128 2e-30
At1g52960.1 68414.m05990 hypothetical protein very low similarit... 28 5.8
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 139 bits (337), Expect = 1e-33
Identities = 72/143 (50%), Positives = 103/143 (72%), Gaps = 2/143 (1%)
Frame = +1
Query: 34 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 207
KI K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 208 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSXTLTSV 387
KAF+KI +RLVRELEKKFSGK V+FV R+I+ P + V +RPR+ TLTSV
Sbjct: 67 FRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSV 122
Query: 388 YNAILEDLVFPAEIVGKRIRXQV 456
+ A+LED+ +PAEIVGKR R ++
Sbjct: 123 HEAMLEDVAYPAEIVGKRTRYRL 145
Score = 51.6 bits (118), Expect = 4e-07
Identities = 20/44 (45%), Positives = 33/44 (75%)
Frame = +2
Query: 452 KLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 583
+LDG++++KV LD + E+K++T VY+KLTG++V FE+P
Sbjct: 144 RLDGTKIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKDVVFEYP 187
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 139 bits (337), Expect = 1e-33
Identities = 72/143 (50%), Positives = 103/143 (72%), Gaps = 2/143 (1%)
Frame = +1
Query: 34 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 207
KI K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 208 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSXTLTSV 387
KAF+KI +RLVRELEKKFSGK V+FV R+I+ P + V +RPR+ TLTSV
Sbjct: 67 FRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSV 122
Query: 388 YNAILEDLVFPAEIVGKRIRXQV 456
+ A+LED+ +PAEIVGKR R ++
Sbjct: 123 HEAMLEDVAYPAEIVGKRTRYRL 145
Score = 51.6 bits (118), Expect = 4e-07
Identities = 20/44 (45%), Positives = 33/44 (75%)
Frame = +2
Query: 452 KLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 583
+LDG++++KV LD + E+K++T VY+KLTG++V FE+P
Sbjct: 144 RLDGTKIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKDVVFEYP 187
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 135 bits (326), Expect = 3e-32
Identities = 73/143 (51%), Positives = 100/143 (69%), Gaps = 2/143 (1%)
Frame = +1
Query: 34 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 207
KI K AE E ++QAL +LE TN +LK++L++LYI +A +++ N+K+++IYVP
Sbjct: 7 KIKKDKNAEPTECEEQVAQALFDLENTNQELKSELKDLYINQAVHMDISGNRKAVVIYVP 66
Query: 208 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSXTLTSV 387
KAF+KI RLVRELEKKFSGK V+FV R+I+ P V +RPR+ TLTSV
Sbjct: 67 FRLRKAFRKIHPRLVRELEKKFSGKDVIFVTTRRIMRPPKKGAAV----QRPRNRTLTSV 122
Query: 388 YNAILEDLVFPAEIVGKRIRXQV 456
+ A+LED+ FPAEIVGKR R ++
Sbjct: 123 HEAMLEDVAFPAEIVGKRTRYRL 145
Score = 54.4 bits (125), Expect = 6e-08
Identities = 21/44 (47%), Positives = 34/44 (77%)
Frame = +2
Query: 452 KLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 583
+LDGS+++KV LD ++ E+K++T VY+KLTG++V FE+P
Sbjct: 144 RLDGSKIMKVFLDAKEKNNTEYKLETMVGVYRKLTGKDVVFEYP 187
>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 128 bits (310), Expect = 2e-30
Identities = 67/143 (46%), Positives = 99/143 (69%), Gaps = 2/143 (1%)
Frame = +1
Query: 34 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 207
KI K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 208 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSXTLTSV 387
KA++KI +RLVRELEKKFSGK V+ + R+I+ +P K A KRPR+ TLTSV
Sbjct: 67 YRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSV 122
Query: 388 YNAILEDLVFPAEIVGKRIRXQV 456
+ AIL+D+V PAEIVGKR R ++
Sbjct: 123 HEAILDDVVLPAEIVGKRTRYRL 145
Score = 58.4 bits (135), Expect = 4e-09
Identities = 23/44 (52%), Positives = 35/44 (79%)
Frame = +2
Query: 452 KLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 583
+LDG++++KV LD ++ E+KV+ F +VYKKLTG++V FEFP
Sbjct: 144 RLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTGKDVVFEFP 187
>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 128 bits (310), Expect = 2e-30
Identities = 67/143 (46%), Positives = 99/143 (69%), Gaps = 2/143 (1%)
Frame = +1
Query: 34 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 207
KI K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 208 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSXTLTSV 387
KA++KI +RLVRELEKKFSGK V+ + R+I+ +P K A KRPR+ TLTSV
Sbjct: 67 YRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSV 122
Query: 388 YNAILEDLVFPAEIVGKRIRXQV 456
+ AIL+D+V PAEIVGKR R ++
Sbjct: 123 HEAILDDVVLPAEIVGKRTRYRL 145
Score = 58.4 bits (135), Expect = 4e-09
Identities = 23/44 (52%), Positives = 35/44 (79%)
Frame = +2
Query: 452 KLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 583
+LDG++++KV LD ++ E+KV+ F +VYKKLTG++V FEFP
Sbjct: 144 RLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTGKDVVFEFP 187
>At1g52960.1 68414.m05990 hypothetical protein very low similarity
to SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 996
Score = 27.9 bits (59), Expect = 5.8
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Frame = +1
Query: 169 ELHNKKSIIIY--VPMPKLKAFQKIQIRLVREL-----EKKFSGKHVVFVGD-RKILP 318
EL + ++II+ PM F+ + R +R++ +K F GK +VF GD R++LP
Sbjct: 640 ELVKEANLIIWDETPMMSKHCFESLD-RTLRDIMNNPGDKPFGGKGIVFGGDFRQVLP 696
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,904,801
Number of Sequences: 28952
Number of extensions: 260684
Number of successful extensions: 744
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -