Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_K21
         (653 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4V8X6 Cluster: F-box protein 7; n=4; Danio rerio|Rep: ...    43   0.007
UniRef50_UPI000038E2D7 Cluster: hypothetical protein Faci_030013...    35   1.5  
UniRef50_Q23AY5 Cluster: Putative uncharacterized protein; n=1; ...    33   7.9  

>UniRef50_Q4V8X6 Cluster: F-box protein 7; n=4; Danio rerio|Rep:
           F-box protein 7 - Danio rerio (Zebrafish) (Brachydanio
           rerio)
          Length = 486

 Score = 42.7 bits (96), Expect = 0.007
 Identities = 26/92 (28%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
 Frame = +1

Query: 367 QNIPITVVMTPLGDTAIINAILK-SLKME-THSTCLRITQYVVSS-TVQNVPCMFRDLKN 537
           +N  ++VV  P+G T +INA+LK    +E +    L+  +YV +  T  +   ++RDL+ 
Sbjct: 238 ENSLVSVVAVPMGQTLVINAVLKMETSLENSRKLLLKPDEYVTAEWTGGSSGVVYRDLRR 297

Query: 538 FAHTVKNNIISPVKSSILKYYGYPSASLVGIP 633
            +  V++ ++ P+ ++  +  G P   L G+P
Sbjct: 298 LSRLVRDQLVYPLMATARQALGLP--LLFGLP 327


>UniRef50_UPI000038E2D7 Cluster: hypothetical protein Faci_03001349;
           n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
           protein Faci_03001349 - Ferroplasma acidarmanus fer1
          Length = 610

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 8/132 (6%)
 Frame = +1

Query: 226 MLIENNL-----IHLNDSGGTKDNIPPENYHCELFYKSADGPNETCFAMRGFQNIPITVV 390
           +LIE N      I LN +G  K+N+ P N + + F +SAD P    +A+  +        
Sbjct: 288 LLIEKNFDMAREIFLNYAGKMKENLVPNNLYSQSFERSADAPLWFIYALYKYYAYS---- 343

Query: 391 MTPLGDTAIINAILKSLKMETHSTCLRITQYVVSS---TVQNVPCMFRDLKNFAHTVKNN 561
                D++ + ++LK+++   +S       + +      V N P  + D KN   +    
Sbjct: 344 ----NDSSFVRSLLKNVRDIINSYISGNEDFSLDGKFIKVSNAPMTWMDAKNGNTSFTPR 399

Query: 562 IISPVKSSILKY 597
           I  PV+ + L Y
Sbjct: 400 IGKPVEINALWY 411


>UniRef50_Q23AY5 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 939

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = +1

Query: 406 DTAIINAILKSLKMETHSTCLRITQYVVSSTVQNVPCMFRDLKNFAHTVKNNIISPVKSS 585
           D   I  I KS K+E+H +   + Q ++   + +V  M RDL+N    + ++    +K  
Sbjct: 246 DVMDIFQIHKSGKLESHYSLQLLDQDIIKEEISSVLFMIRDLENVVRDLHDDFAKALKFG 305

Query: 586 ILKYY 600
              YY
Sbjct: 306 DYGYY 310


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 578,540,162
Number of Sequences: 1657284
Number of extensions: 11065081
Number of successful extensions: 23889
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23879
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49173558301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)