Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_K21
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    26   5.5  
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    25   7.2  
SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr...    25   7.2  
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    25   7.2  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.5  

>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +2

Query: 269 VLKTIFLLKIIIVNCFINLQMVQMKLALLCVVFKIYPLQLL*HL 400
           VL TIF++    VN F +L+   + ++ +     ++PL  L +L
Sbjct: 158 VLTTIFVIVFAAVNQFFSLRYPALSISFIVAQLILFPLGKLLNL 201


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +3

Query: 324 CRWSK*NLLCYAWFSKYTHYSCYDTFRGH 410
           C W K +LL     S       YDTFRGH
Sbjct: 340 CPWQK-SLLAVGTGSNDQQIYFYDTFRGH 367


>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 747

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +1

Query: 214 LLTAMLIENNLIHLNDSGGTKDNIPPENYHCELFYKSADGPNETC 348
           L+  ML  N  I L    GT   IP   +HC + Y+  +   ETC
Sbjct: 246 LIANMLFSN--IQLGQECGTLVAIPTP-HHCSIDYEKMEALIETC 287


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 354 YAWFSKYTHYSCY 392
           YAWF+ Y+ Y CY
Sbjct: 342 YAWFAWYSPYLCY 354


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/58 (25%), Positives = 24/58 (41%)
 Frame = -3

Query: 174  FPX*NTFNYIFQ*FRHFLSSTFFNH*IHH*ASVYFCIKYYQYNIKSLEKRTILVVKDS 1
            FP    ++Y ++ F  +    FF          Y  I  Y +NI     + + +VKDS
Sbjct: 3450 FPESIYYDYFYKTFERYCDFWFFRRTFTT-QYAYMIIMTYVFNIGGRSPQKLFIVKDS 3506


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,552,837
Number of Sequences: 5004
Number of extensions: 52370
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)