Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_K21
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              30   1.9  
SB_9023| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.5  
SB_13640| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  

>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = +3

Query: 351 CYAWFSKYTHYSCYDTFRGHSHYKCYPQKLKNGDPFYMFTYHSICCIKYCTKCS 512
           CY +   Y +Y CY     + +Y CY          Y + +H  CC   C  C+
Sbjct: 476 CYYYCYCYCYYYCYYYCYCYCYYCCYYCYC------YYYYHHYYCCYYCCCSCT 523


>SB_9023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 625

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 416 MAVSPKGVITTVMGIF*KPRIAKQVSFGP 330
           + + P  ++   +G+F K  IAK+V FGP
Sbjct: 235 LEIRPSPILNAGLGVFAKSSIAKRVKFGP 263


>SB_13640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 416 MAVSPKGVITTVMGIF*KPRIAKQVSFGP 330
           + + P  ++   +G+F K  IAK+V FGP
Sbjct: 29  LEIRPSPILNAGLGVFAKSSIAKRVKFGP 57


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,840,157
Number of Sequences: 59808
Number of extensions: 350003
Number of successful extensions: 1477
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1469
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)