Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_K20
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    27   2.3  
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    25   9.4  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    25   9.4  

>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 48  FHLVLILTFVCYMRTALLHSNIDCFVTIPTL-QADTKVVGAVSLASARLL 194
           FH+ L L F C+  T   H+N + FVT   + Q       ++S AS RL+
Sbjct: 416 FHIHLRLNFPCFKDTTRPHTN-ETFVTTDDITQLSRTSTLSLSTASPRLV 464


>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 596 ICDPVMGNYSYVIAKIYWTPIF 531
           IC     NYSY    I+W P F
Sbjct: 78  ICLVYSDNYSYERVSIFWLPYF 99


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 59  FNFNVCVLHENSPAPLQYRLLCYDSY 136
           F  ++ VL E +   +  +L+CYDS+
Sbjct: 501 FKASLAVLSETNEVVMDSKLICYDSW 526


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,638,737
Number of Sequences: 5004
Number of extensions: 51719
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)