Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_K20
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g17510.1 68415.m02025 ribonuclease II family protein similar ...    30   1.2  
At4g39010.1 68417.m05526 glycosyl hydrolase family 9 protein end...    29   3.5  
At1g21790.1 68414.m02727 expressed protein                             28   6.1  

>At2g17510.1 68415.m02025 ribonuclease II family protein similar to
           SP|P37202 Mitotic control protein dis3
           {Schizosaccharomyces pombe}; contains Pfam profile
           PF00773: RNB-like protein
          Length = 933

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 531 ENWSPINFSNDIA-IITHNWVTYTNVIQPIALPSGS 635
           +N +P+  S  +  +I  NW +Y   ++P++LP+GS
Sbjct: 330 KNAAPVRPSGRVVGVIRRNWHSYCGSLEPMSLPAGS 365


>At4g39010.1 68417.m05526 glycosyl hydrolase family 9 protein
           endo-1,4-beta-glucanase precursor - Fragariax ananassa,
           PID:g3549291
          Length = 497

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -3

Query: 208 DSMYGSRRADANETAPTTFVSA*RVGIV 125
           D MY   R+D  ++ PTT+++A  VG++
Sbjct: 460 DDMYDDDRSDFRKSEPTTYINAPFVGVL 487


>At1g21790.1 68414.m02727 expressed protein
          Length = 288

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 6   VCFLVVLDQN*NIRFHLVLILTFVCYMRTALLH 104
           VCF + L +N  I +   LILT +C M +  LH
Sbjct: 157 VCFTLALYRNVTINY---LILTLICEMHSIFLH 186


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,747,510
Number of Sequences: 28952
Number of extensions: 274057
Number of successful extensions: 571
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)