Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_K16
         (496 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.2  
SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation...    25   8.3  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    25   8.3  

>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 196 DDADRELHYQSFKKHLAEINQLNXKNPYTTFGINKF-ADYTPEEQQSRL 339
           DD+D E  Y+  +       +L+ KN Y+TF  ++F    TP   QS L
Sbjct: 367 DDSDSERSYRRVRDQYLSKPRLSDKNRYSTF--SEFPGQGTPSASQSNL 413


>SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation
           factor eIF2 beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 321

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 119 LRDIMTSIKPKNCSKFSSKNITGNTRMMPTES 214
           L+D+ +S+K K  SK SS +    T  + TES
Sbjct: 76  LKDMFSSMKKKKKSKKSSASAEEQTEDITTES 107


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -2

Query: 354 RQPQSQPALLFLRSIISKFVNAKRSIWILXVQL 256
           R  ++Q ALL L  I SKF N   + W L VQL
Sbjct: 866 RDFRAQLALLVLFWISSKFGNIIDASWPLLVQL 898


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,926,537
Number of Sequences: 5004
Number of extensions: 36154
Number of successful extensions: 110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)