Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_K14
         (549 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein S15|S...   178   4e-46
SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein S15|Schizosac...   178   5e-46
SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit S19...    52   6e-08
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po...    27   1.4  
SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb...    27   2.4  
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch...    26   3.2  
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr...    26   4.2  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    25   5.6  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    25   7.3  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    25   9.7  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    25   9.7  

>SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 154

 Score =  178 bits (434), Expect = 4e-46
 Identities = 83/120 (69%), Positives = 93/120 (77%)
 Frame = +2

Query: 119 LHMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEAPPNXKPEIVKTHLRNMII 298
           L +  EQL++L H         GL       ++KLR+AK EAP N KP  VKTHLRNMII
Sbjct: 35  LDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKSEAPLNEKPATVKTHLRNMII 94

Query: 299 VPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 478
           +PEMVGS+VGIYNGK FNQVEI+PEMIGHYLGEFS+TYKP KHGRPGIGATHSSRFIPLK
Sbjct: 95  LPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKPTKHGRPGIGATHSSRFIPLK 154



 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 57 LKKKRIFRKFTYRG 98
          L+KKR FR F YRG
Sbjct: 15 LRKKRTFRTFAYRG 28


>SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 153

 Score =  178 bits (433), Expect = 5e-46
 Identities = 83/120 (69%), Positives = 93/120 (77%)
 Frame = +2

Query: 119 LHMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEAPPNXKPEIVKTHLRNMII 298
           L +  EQL++L H         GL       ++KLR+AK EAP N KP  VKTHLRNMII
Sbjct: 34  LDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKTEAPLNEKPATVKTHLRNMII 93

Query: 299 VPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 478
           +PEMVGS+VGIYNGK FNQVEI+PEMIGHYLGEFS+TYKP KHGRPGIGATHSSRFIPLK
Sbjct: 94  LPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKPTKHGRPGIGATHSSRFIPLK 153



 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 57 LKKKRIFRKFTYRG 98
          L+KKR FR F YRG
Sbjct: 14 LRKKRSFRTFAYRG 27


>SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit
           S19|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 52.0 bits (119), Expect = 6e-08
 Identities = 23/49 (46%), Positives = 35/49 (71%)
 Frame = +2

Query: 269 VKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYK 415
           +KT +R+  I+P MVG+   ++NGK++  V+I  +MIGH LGEF+ T K
Sbjct: 50  IKTAVRSATILPRMVGAQFMVHNGKSYANVKITEDMIGHKLGEFAPTRK 98


>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 331 NADN*TDHLGNDDHVSQVSLHDLWLXIR 248
           N  N T H+ ++  V +V++HD+W  I+
Sbjct: 18  NVPNETKHIFDEISVKEVAVHDIWKRIQ 45


>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 471 GMNLELCVAPIPGLPCFTGLYVTENS 394
           G+N+ LCV   PG P  TG  ++ENS
Sbjct: 241 GINVRLCVVINPGNP--TGACISENS 264


>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 462 LELCVAPIPGLPCFTGLYVTE 400
           LELC    PG+P   G++  E
Sbjct: 222 LELCTRMFPGIPIMAGIFADE 242


>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
 Frame = +2

Query: 305 EMVGSIVGIYNGK-TFNQVEIKPEMI-----GHYLGEFSV-TYKPVKHGRPGIGATH 454
           E+  + VG+YNGK  F +  + P+ +      H L E ++   KP++   PG+  TH
Sbjct: 23  EITDATVGVYNGKIVFLEKSMTPKTLEEAKSHHLLKEATIHKLKPLQFMFPGLIDTH 79


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 335 NGKTFNQVEIKPEMIGHYLGEFSVTYKPV 421
           N +TF+  E   E     + +F VT KP+
Sbjct: 829 NSETFDDFEFSVEQFNSLINQFVVTGKPI 857


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
 Frame = +2

Query: 188 LKRKPMALVKKLRRAKKEAPPNXKPEIV---KTHL---RNMIIVPEMVGSIVGIYNGKTF 349
           L +  + LV+ L++      PN  PEIV   KT+L    N +IV  ++   +  Y+ +  
Sbjct: 115 LNKLDLTLVQILKQEWPHNWPNFIPEIVQASKTNLSLCENNMIVLRLLSEEIFDYSAEQM 174

Query: 350 NQVEIKPEMIGHYLGEFSVTYK 415
            Q++ K  +     GEF+  ++
Sbjct: 175 TQLKTK-NLKNQMCGEFAEIFQ 195


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 33  NMAEVDETLKKKRIFRKFTYRGS*SRSAPCICP 131
           NM EVD  +   + F +F YR     S PC  P
Sbjct: 739 NMNEVDMPVGGFKTFNEFFYRKLKPGSRPCAFP 771


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 188 LKRKPMALVKKLRRAKKEAPPNXKPEIVKTHL 283
           L R+P  + +K R   KEA PN    I++  L
Sbjct: 10  LPRRPPYMAEKARATLKEAFPNTDDAIIRAVL 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,988,456
Number of Sequences: 5004
Number of extensions: 36519
Number of successful extensions: 100
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)