Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_K14
         (549 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29066| Best HMM Match : No HMM Matches (HMM E-Value=.)             200   6e-52
SB_27831| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.6e-11)         28   5.8  
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_29066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score =  200 bits (488), Expect = 6e-52
 Identities = 92/120 (76%), Positives = 104/120 (86%)
 Frame = +2

Query: 119 LHMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEAPPNXKPEIVKTHLRNMII 298
           L + +EQLMEL+          GLKRKP+AL+K+LR+AKKEA P  KPE+VKTHLRNMII
Sbjct: 30  LDLSHEQLMELVCCRQRRRFTRGLKRKPLALMKRLRKAKKEAAPMEKPEVVKTHLRNMII 89

Query: 299 VPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 478
           VPEM+GS+VG+YNGKTF QVEIKPEMIGHYLGEFS+TYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 90  VPEMIGSVVGVYNGKTFTQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 149



 Score = 31.1 bits (67), Expect = 0.62
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +3

Query: 48 DETLKKKRIFRKFTYRG 98
          D  +K+KR FRKFTYRG
Sbjct: 7  DAQIKRKRTFRKFTYRG 23


>SB_27831| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.6e-11)
          Length = 350

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = -3

Query: 202 WFTFKTTSEP-PARTGMH*FHELLIGHMQGADRDQLPR*VNFLK-IRFFLRVS 50
           W +F   ++  PAR G+     L I +M G+    LPR V++LK I +FL +S
Sbjct: 182 WVSFWVDADAVPARVGLSITTVLTICYMLGSVNSNLPR-VSYLKAIDYFLLLS 233


>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3235

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 359  EIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIP 472
            ++KP++  +  G ++V Y P K GR  I   +  R +P
Sbjct: 1714 DLKPDVKDNGDGTYTVAYVPDKPGRYNIDVKYGDRRVP 1751


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,183,244
Number of Sequences: 59808
Number of extensions: 281610
Number of successful extensions: 593
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)