Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_K14
         (549 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.38 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   6.2  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              21   8.2  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 25.4 bits (53), Expect = 0.38
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 44   GRRNP-QEKAYFQEVHLPGQLISISSLH 124
            G++ P Q++   Q + LP QL++I +LH
Sbjct: 1227 GKQQPSQQQTQQQPIILPSQLLNIKTLH 1254



 Score = 21.8 bits (44), Expect = 4.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 441  SVLHTAQGSFRSSXASKTTSRLSVTQNLHXITIK 542
            SVLH+AQ    SS ++ T    ++T  L  + ++
Sbjct: 940  SVLHSAQSVVASSASNVTNVTTNLTTILPPVKVQ 973


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 418 CKAR*TRYRCYTQLKVHS 471
           CKA    + C  QLKVH+
Sbjct: 206 CKACGKGFTCSKQLKVHT 223


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/35 (20%), Positives = 19/35 (54%)
 Frame = -3

Query: 538 IVXSCKFCVTLSLEVVLDAXLERNEP*AVCSTDTG 434
           IV    FC+ ++   + +  ++ ++   +C T++G
Sbjct: 4   IVVIFAFCICVNAMTIEELKIQLHDVQEICKTESG 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,056
Number of Sequences: 438
Number of extensions: 2366
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)