Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_K13
         (363 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...    78   5e-16
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    52   2e-08
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    46   2e-06
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    41   5e-05
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    36   0.002
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    35   0.003
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    34   0.008
SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|ch...    29   0.22 
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    25   4.8  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    25   4.8  
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c...    24   8.3  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score = 77.8 bits (183), Expect = 5e-16
 Identities = 33/39 (84%), Positives = 36/39 (92%)
 Frame = +3

Query: 129 KLPRLVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 245
           ++  LV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G
Sbjct: 4   EIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHG 42



 Score = 68.9 bits (161), Expect = 2e-13
 Identities = 31/37 (83%), Positives = 32/37 (86%)
 Frame = +1

Query: 232 PAIRAVMVGMGQKDSYVXDEAQSKRGILTLKYPIEHG 342
           P    +MVGMGQKDSYV DEAQSKRGILTLKYPIEHG
Sbjct: 38  PRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 74


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 52.4 bits (120), Expect = 2e-08
 Identities = 20/34 (58%), Positives = 27/34 (79%)
 Frame = +3

Query: 141 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 242
           + +DNGSG  KAGFAGDD P+ +FP+ VGR +H+
Sbjct: 12  ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHE 45



 Score = 34.3 bits (75), Expect = 0.006
 Identities = 16/32 (50%), Positives = 21/32 (65%)
 Frame = +1

Query: 247 VMVGMGQKDSYVXDEAQSKRGILTLKYPIEHG 342
           VM    QKD +V  EAQ+ RG+L ++ PIE G
Sbjct: 47  VMPSSIQKDMFVGSEAQNLRGLLKIQRPIERG 78


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 45.6 bits (103), Expect = 2e-06
 Identities = 19/31 (61%), Positives = 24/31 (77%)
 Frame = +3

Query: 141 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 233
           +V+DNG+G  K G+A D+ PR  FPSIVGRP
Sbjct: 6   IVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36



 Score = 32.3 bits (70), Expect = 0.024
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +1

Query: 268 KDSYVXDEAQSKRGILTLKYPIEHG 342
           KD  V DEA++ R +L +KYP+E+G
Sbjct: 50  KDVMVGDEAEAVRSLLQVKYPMENG 74


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 41.1 bits (92), Expect = 5e-05
 Identities = 16/35 (45%), Positives = 27/35 (77%)
 Frame = +3

Query: 120 ATXKLPRLVVDNGSGMCKAGFAGDDAPRAVFPSIV 224
           A+  +P +++DNG+G  K G+AG+DAP  VFP+++
Sbjct: 2   ASFNVP-IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 35.9 bits (79), Expect = 0.002
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +3

Query: 141 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 236
           LV+DNGS   +AG+ G+  P+ VF ++V R R
Sbjct: 27  LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 35.1 bits (77), Expect = 0.003
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +3

Query: 129 KLPRLVVDNGSGMCKAGFAGDDAPRAVFPSIVG 227
           ++P LV+D GS   + G+AG+++P  + PS  G
Sbjct: 9   EIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 33.9 bits (74), Expect = 0.008
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 141 LVVDNGSGMCKAGFAGDDAPRAVFPSIVG 227
           +V+D GS   + GF+G+D P+ V PS  G
Sbjct: 14  IVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42


>SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 442

 Score = 29.1 bits (62), Expect = 0.22
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 241 RAVMVGMGQKDSYVXDEAQSKRGILTLKYPIEHGXPFQPL 360
           +A+  GM  K +YV    +    +  LKY ++H  P +PL
Sbjct: 47  KALEAGMSDKAAYVTQGKEIISLLNQLKYDLQHNRPLKPL 86


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 141 LVVDNGSGMCKAGFAG 188
           +V+DNG+   KAGFAG
Sbjct: 8   IVLDNGAYHIKAGFAG 23


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 324 FEGQDTSFALCLISYIRVLLSHTD 253
           +EG+DT+      +Y+R++L  TD
Sbjct: 74  YEGEDTTRITRFANYLRIILPGTD 97


>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 288 ISYIRVLLSHTDHHGPDGGAFPRSRG 211
           +  ++  L H++HHG   G F  S G
Sbjct: 323 LDLLKSFLDHSNHHGVRAGVFFISTG 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,463,196
Number of Sequences: 5004
Number of extensions: 26192
Number of successful extensions: 68
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)