Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_K13
(363 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 80 4e-16
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 80 5e-16
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 80 5e-16
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 80 5e-16
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 80 5e-16
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 80 5e-16
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 80 5e-16
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 80 5e-16
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 80 5e-16
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 80 5e-16
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 80 5e-16
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 80 5e-16
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 78 2e-15
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 70 6e-13
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 66 5e-12
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 47 5e-06
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 46 1e-05
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 38 0.002
U80444-2|AAB37788.1| 305|Caenorhabditis elegans Collagen protei... 29 1.00
Z81122-5|CAB03357.1| 579|Caenorhabditis elegans Hypothetical pr... 29 1.3
U70849-7|AAF99925.2| 332|Caenorhabditis elegans Collagen protei... 29 1.3
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 29 1.3
AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical ... 28 2.3
AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen pro... 28 2.3
Z71262-8|CAA95812.1| 302|Caenorhabditis elegans Hypothetical pr... 27 4.0
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 26 7.0
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 26 7.0
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 26 7.0
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 26 7.0
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 26 7.0
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 26 9.3
Z49967-1|CAA90247.1| 161|Caenorhabditis elegans Hypothetical pr... 26 9.3
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 26 9.3
U80451-9|AAB37843.1| 285|Caenorhabditis elegans Collagen protei... 26 9.3
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 26 9.3
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 26 9.3
AF036699-4|AAB88358.1| 281|Caenorhabditis elegans Collagen prot... 26 9.3
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 80.2 bits (189), Expect = 4e-16
Identities = 35/39 (89%), Positives = 37/39 (94%)
Frame = +3
Query: 129 KLPRLVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 245
++ LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 4 EIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 42
Score = 69.7 bits (163), Expect = 6e-13
Identities = 32/37 (86%), Positives = 33/37 (89%)
Frame = +1
Query: 232 PAIRAVMVGMGQKDSYVXDEAQSKRGILTLKYPIEHG 342
P + VMVGMGQKDSYV DEAQSKRGILTLKYPIEHG
Sbjct: 38 PRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 74
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 79.8 bits (188), Expect = 5e-16
Identities = 35/35 (100%), Positives = 35/35 (100%)
Frame = +3
Query: 141 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 245
LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 69.7 bits (163), Expect = 6e-13
Identities = 32/37 (86%), Positives = 33/37 (89%)
Frame = +1
Query: 232 PAIRAVMVGMGQKDSYVXDEAQSKRGILTLKYPIEHG 342
P + VMVGMGQKDSYV DEAQSKRGILTLKYPIEHG
Sbjct: 39 PRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 75
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 79.8 bits (188), Expect = 5e-16
Identities = 35/35 (100%), Positives = 35/35 (100%)
Frame = +3
Query: 141 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 245
LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 69.7 bits (163), Expect = 6e-13
Identities = 32/37 (86%), Positives = 33/37 (89%)
Frame = +1
Query: 232 PAIRAVMVGMGQKDSYVXDEAQSKRGILTLKYPIEHG 342
P + VMVGMGQKDSYV DEAQSKRGILTLKYPIEHG
Sbjct: 39 PRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 75
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 79.8 bits (188), Expect = 5e-16
Identities = 35/35 (100%), Positives = 35/35 (100%)
Frame = +3
Query: 141 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 245
LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 69.7 bits (163), Expect = 6e-13
Identities = 32/37 (86%), Positives = 33/37 (89%)
Frame = +1
Query: 232 PAIRAVMVGMGQKDSYVXDEAQSKRGILTLKYPIEHG 342
P + VMVGMGQKDSYV DEAQSKRGILTLKYPIEHG
Sbjct: 39 PRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 75
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 79.8 bits (188), Expect = 5e-16
Identities = 35/35 (100%), Positives = 35/35 (100%)
Frame = +3
Query: 141 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 245
LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 69.7 bits (163), Expect = 6e-13
Identities = 32/37 (86%), Positives = 33/37 (89%)
Frame = +1
Query: 232 PAIRAVMVGMGQKDSYVXDEAQSKRGILTLKYPIEHG 342
P + VMVGMGQKDSYV DEAQSKRGILTLKYPIEHG
Sbjct: 39 PRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 75
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 79.8 bits (188), Expect = 5e-16
Identities = 35/35 (100%), Positives = 35/35 (100%)
Frame = +3
Query: 141 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 245
LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 69.7 bits (163), Expect = 6e-13
Identities = 32/37 (86%), Positives = 33/37 (89%)
Frame = +1
Query: 232 PAIRAVMVGMGQKDSYVXDEAQSKRGILTLKYPIEHG 342
P + VMVGMGQKDSYV DEAQSKRGILTLKYPIEHG
Sbjct: 39 PRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 75
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 79.8 bits (188), Expect = 5e-16
Identities = 35/35 (100%), Positives = 35/35 (100%)
Frame = +3
Query: 141 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 245
LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 69.7 bits (163), Expect = 6e-13
Identities = 32/37 (86%), Positives = 33/37 (89%)
Frame = +1
Query: 232 PAIRAVMVGMGQKDSYVXDEAQSKRGILTLKYPIEHG 342
P + VMVGMGQKDSYV DEAQSKRGILTLKYPIEHG
Sbjct: 39 PRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 75
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 79.8 bits (188), Expect = 5e-16
Identities = 35/35 (100%), Positives = 35/35 (100%)
Frame = +3
Query: 141 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 245
LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 69.7 bits (163), Expect = 6e-13
Identities = 32/37 (86%), Positives = 33/37 (89%)
Frame = +1
Query: 232 PAIRAVMVGMGQKDSYVXDEAQSKRGILTLKYPIEHG 342
P + VMVGMGQKDSYV DEAQSKRGILTLKYPIEHG
Sbjct: 39 PRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 75
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 79.8 bits (188), Expect = 5e-16
Identities = 35/35 (100%), Positives = 35/35 (100%)
Frame = +3
Query: 141 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 245
LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 69.7 bits (163), Expect = 6e-13
Identities = 32/37 (86%), Positives = 33/37 (89%)
Frame = +1
Query: 232 PAIRAVMVGMGQKDSYVXDEAQSKRGILTLKYPIEHG 342
P + VMVGMGQKDSYV DEAQSKRGILTLKYPIEHG
Sbjct: 39 PRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 75
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 79.8 bits (188), Expect = 5e-16
Identities = 35/35 (100%), Positives = 35/35 (100%)
Frame = +3
Query: 141 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 245
LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 69.7 bits (163), Expect = 6e-13
Identities = 32/37 (86%), Positives = 33/37 (89%)
Frame = +1
Query: 232 PAIRAVMVGMGQKDSYVXDEAQSKRGILTLKYPIEHG 342
P + VMVGMGQKDSYV DEAQSKRGILTLKYPIEHG
Sbjct: 39 PRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 75
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 79.8 bits (188), Expect = 5e-16
Identities = 35/35 (100%), Positives = 35/35 (100%)
Frame = +3
Query: 141 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 245
LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 69.7 bits (163), Expect = 6e-13
Identities = 32/37 (86%), Positives = 33/37 (89%)
Frame = +1
Query: 232 PAIRAVMVGMGQKDSYVXDEAQSKRGILTLKYPIEHG 342
P + VMVGMGQKDSYV DEAQSKRGILTLKYPIEHG
Sbjct: 39 PRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 75
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 79.8 bits (188), Expect = 5e-16
Identities = 35/35 (100%), Positives = 35/35 (100%)
Frame = +3
Query: 141 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 245
LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 69.7 bits (163), Expect = 6e-13
Identities = 32/37 (86%), Positives = 33/37 (89%)
Frame = +1
Query: 232 PAIRAVMVGMGQKDSYVXDEAQSKRGILTLKYPIEHG 342
P + VMVGMGQKDSYV DEAQSKRGILTLKYPIEHG
Sbjct: 39 PRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 75
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 78.2 bits (184), Expect = 2e-15
Identities = 33/35 (94%), Positives = 35/35 (100%)
Frame = +3
Query: 141 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 245
L++DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 9 LILDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 69.7 bits (163), Expect = 6e-13
Identities = 32/37 (86%), Positives = 33/37 (89%)
Frame = +1
Query: 232 PAIRAVMVGMGQKDSYVXDEAQSKRGILTLKYPIEHG 342
P + VMVGMGQKDSYV DEAQSKRGILTLKYPIEHG
Sbjct: 39 PRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 75
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 69.7 bits (163), Expect = 6e-13
Identities = 32/37 (86%), Positives = 33/37 (89%)
Frame = +1
Query: 232 PAIRAVMVGMGQKDSYVXDEAQSKRGILTLKYPIEHG 342
P + VMVGMGQKDSYV DEAQSKRGILTLKYPIEHG
Sbjct: 25 PRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 61
Score = 56.8 bits (131), Expect = 4e-09
Identities = 24/25 (96%), Positives = 25/25 (100%)
Frame = +3
Query: 171 KAGFAGDDAPRAVFPSIVGRPRHQG 245
+AGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 5 RAGFAGDDAPRAVFPSIVGRPRHQG 29
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 66.5 bits (155), Expect = 5e-12
Identities = 30/31 (96%), Positives = 30/31 (96%)
Frame = +1
Query: 250 MVGMGQKDSYVXDEAQSKRGILTLKYPIEHG 342
MVGMGQKDSYV DEAQSKRGILTLKYPIEHG
Sbjct: 1 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 31
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 46.8 bits (106), Expect = 5e-06
Identities = 18/33 (54%), Positives = 26/33 (78%)
Frame = +3
Query: 141 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH 239
+V+DNGSG+ KAGFAG+ P+ F + VGRP++
Sbjct: 11 VVIDNGSGVIKAGFAGEQQPKVRFANFVGRPKY 43
Score = 36.3 bits (80), Expect = 0.007
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 232 PAIRAVMVGMGQKDSYVXDEAQSKRGILTLKYPIEHG 342
P VM G D ++ +A+S RG+ +++YP+EHG
Sbjct: 41 PKYHRVMAGGLDGDIFIGPKAESNRGLFSIEYPMEHG 77
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 45.6 bits (103), Expect = 1e-05
Identities = 18/31 (58%), Positives = 24/31 (77%)
Frame = +3
Query: 141 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 233
+VVDNG+G K G+AG + P +FPS+VGRP
Sbjct: 9 IVVDNGTGFVKCGYAGTNFPAHIFPSMVGRP 39
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 37.9 bits (84), Expect = 0.002
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +3
Query: 129 KLPRLVVDNGSGMCKAGFAGDDAPRAVFPSIV 224
+LP V+DNG+G K G+AG+ P+ + PS +
Sbjct: 5 QLPACVIDNGTGYTKLGYAGNTEPQFIIPSAI 36
Score = 27.9 bits (59), Expect = 2.3
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +1
Query: 247 VMVGMGQKDSYVXDEAQSKRGI-LTLKYPIEHG 342
V G+ D ++ DEA S T+KYPI HG
Sbjct: 56 VGAGIDDLDFFIGDEALSPAATNYTVKYPIRHG 88
>U80444-2|AAB37788.1| 305|Caenorhabditis elegans Collagen protein
58 protein.
Length = 305
Score = 29.1 bits (62), Expect = 1.00
Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = +3
Query: 168 CKAGFAGDDAPRAV--FPSIVGRPRHQGRDGRYGTEG 272
C AG G PR P I G P G GR+GT G
Sbjct: 161 CPAGPMGPPGPRGPPGVPGITGAPGLDGIPGRHGTPG 197
>Z81122-5|CAB03357.1| 579|Caenorhabditis elegans Hypothetical
protein T13F2.6 protein.
Length = 579
Score = 28.7 bits (61), Expect = 1.3
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 3 IPRSELGSLRCTAITKLCNSKLIYLFIIE 89
+P+ E+G L CT I C ++ I+ F IE
Sbjct: 156 LPKREIGRLLCTVIAVQCPTEKIWKFRIE 184
>U70849-7|AAF99925.2| 332|Caenorhabditis elegans Collagen protein
111 protein.
Length = 332
Score = 28.7 bits (61), Expect = 1.3
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = +3
Query: 183 AGDDAPRAVFPSIVGRPRHQGRDGRYGTEG 272
AG PR P VG P QGRDG G G
Sbjct: 147 AGPPGPRGA-PGSVGEPGPQGRDGMGGRPG 175
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 28.7 bits (61), Expect = 1.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 141 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 224
LV D GS + GFAG++ P+ PS +
Sbjct: 14 LVFDAGSQSFRVGFAGEEYPKGDIPSYI 41
>AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical
protein C08F1.11 protein.
Length = 279
Score = 27.9 bits (59), Expect = 2.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 171 KAGFAGDDAPRAVFPSIVGRPRHQG 245
KA + G D P+A F I+G ++G
Sbjct: 44 KASYLGHDTPQATFREIIGNKEYRG 68
>AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen
protein 143 protein.
Length = 319
Score = 27.9 bits (59), Expect = 2.3
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 171 KAGFAGDDAPRAVFPSIVGRPRHQGRDGRYGTEG 272
++G AG P+ P G+P H G DG GT G
Sbjct: 224 RSGGAGTPGPQGP-PGPSGQPGHSGNDGVPGTPG 256
>Z71262-8|CAA95812.1| 302|Caenorhabditis elegans Hypothetical
protein F22D6.10 protein.
Length = 302
Score = 27.1 bits (57), Expect = 4.0
Identities = 13/43 (30%), Positives = 17/43 (39%)
Frame = +3
Query: 144 VVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGRDGRYGTEG 272
+ S C G + PR P G P G DG+ G +G
Sbjct: 78 IFKRNSDSCNCGAKASNCPRGP-PGPPGEPGENGTDGQAGQDG 119
Score = 25.8 bits (54), Expect = 9.3
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 150 DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGRDGRYGTEG 272
D + C AG G+ P G P GRDG+ G++G
Sbjct: 134 DGSTSTCPAGPPGEQGPD-------GAPGEAGRDGQPGSDG 167
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 26.2 bits (55), Expect = 7.0
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 177 GFAGDDAPRAVFPSIVGRPRHQGRDGRYGTEGL 275
GFAG FP + G P + G+DG G GL
Sbjct: 1204 GFAGTPG----FPGLKGSPGYPGQDGLPGIPGL 1232
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 26.2 bits (55), Expect = 7.0
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 177 GFAGDDAPRAVFPSIVGRPRHQGRDGRYGTEGL 275
GFAG FP + G P + G+DG G GL
Sbjct: 1203 GFAGTPG----FPGLKGSPGYPGQDGLPGIPGL 1231
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 26.2 bits (55), Expect = 7.0
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 177 GFAGDDAPRAVFPSIVGRPRHQGRDGRYGTEGL 275
GFAG FP + G P + G+DG G GL
Sbjct: 1203 GFAGTPG----FPGLKGSPGYPGQDGLPGIPGL 1231
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 26.2 bits (55), Expect = 7.0
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 177 GFAGDDAPRAVFPSIVGRPRHQGRDGRYGTEGL 275
GFAG FP + G P + G+DG G GL
Sbjct: 1204 GFAGTPG----FPGLKGSPGYPGQDGLPGIPGL 1232
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) collagen
protein.
Length = 1795
Score = 26.2 bits (55), Expect = 7.0
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 177 GFAGDDAPRAVFPSIVGRPRHQGRDGRYGTEGL 275
GFAG FP + G P + G+DG G GL
Sbjct: 1240 GFAGTPG----FPGLKGSPGYPGQDGLPGIPGL 1268
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 25.8 bits (54), Expect = 9.3
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 232 GLPTIEGNTARGASSPAKPALHIP 161
G P GN +GAS+P +P P
Sbjct: 123 GAPGAPGNPGKGASAPCEPVTQPP 146
>Z49967-1|CAA90247.1| 161|Caenorhabditis elegans Hypothetical
protein F54C9.1 protein.
Length = 161
Score = 25.8 bits (54), Expect = 9.3
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Frame = -1
Query: 252 HHGPDGGA--FPRS-RGTRREEHHLLRNRPC 169
H G G A FP+ R+ EH +++ RPC
Sbjct: 12 HTGDSGAAATFPKQCSALRKNEHVMIKGRPC 42
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 25.8 bits (54), Expect = 9.3
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 232 GLPTIEGNTARGASSPAKPALHIP 161
G P GN +GAS+P +P P
Sbjct: 123 GAPGAPGNPGKGASAPCEPVTQPP 146
>U80451-9|AAB37843.1| 285|Caenorhabditis elegans Collagen protein
73 protein.
Length = 285
Score = 25.8 bits (54), Expect = 9.3
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 174 AGFAGDDAPRAVFPSIVGRPRHQGRDGRYGTEG 272
AG AG+ P+ P G P QG +GR G G
Sbjct: 146 AGNAGNPGPKGP-PGQPGAPGEQGPNGRPGAPG 177
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 25.8 bits (54), Expect = 9.3
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 232 GLPTIEGNTARGASSPAKPALHIP 161
G P GN +GAS+P +P P
Sbjct: 123 GAPGAPGNPGKGASAPCEPVTQPP 146
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 25.8 bits (54), Expect = 9.3
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 232 GLPTIEGNTARGASSPAKPALHIP 161
G P GN +GAS+P +P P
Sbjct: 123 GAPGAPGNPGKGASAPCEPVTQPP 146
>AF036699-4|AAB88358.1| 281|Caenorhabditis elegans Collagen protein
104 protein.
Length = 281
Score = 25.8 bits (54), Expect = 9.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 213 PSIVGRPRHQGRDGRYGTEG 272
P G P +GRDG +GT+G
Sbjct: 186 PGNNGEPGDKGRDGSHGTKG 205
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,394,416
Number of Sequences: 27780
Number of extensions: 162551
Number of successful extensions: 605
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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