Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_K10
         (572 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) simi...   196   9e-51
At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same...   195   2e-50
At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)           194   3e-50
At3g49080.1 68416.m05362 ribosomal protein S9 family protein con...    45   4e-05
At1g43570.1 68414.m05001 hypothetical protein                          32   0.24 
At1g50650.1 68414.m05694 stigma-specific Stig1 family protein lo...    29   2.9  
At3g24255.1 68416.m03045 expressed protein                             28   3.8  
At1g49430.1 68414.m05541 long-chain-fatty-acid--CoA ligase / lon...    27   8.9  

>At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) similar
           to 40S ribosomal protein S16 GB:AAD22696 [Arabidopsis
           thaliana]
          Length = 146

 Score =  196 bits (478), Expect = 9e-51
 Identities = 86/129 (66%), Positives = 111/129 (86%)
 Frame = +3

Query: 60  QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVD 239
           ++VQ FGRKKTATAV YCKRG GM+++NG P++L +P +L++K+ EP+LLLGK +F+ VD
Sbjct: 8   ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67

Query: 240 IRVTVKGGGHVXQVYAIRQAISKALIAFYQKYVXEASKKEIKDILXQYDRSLLVADPRRC 419
           +R+   GGG+  +VYAIRQ+I+KAL+A+YQKYV E SKKEIKDIL +YDR+LLVADPRRC
Sbjct: 68  MRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRC 127

Query: 420 EPKKFGGPG 446
           E KKFGGPG
Sbjct: 128 ESKKFGGPG 136


>At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same as
           GB:Q42340
          Length = 146

 Score =  195 bits (475), Expect = 2e-50
 Identities = 87/135 (64%), Positives = 113/135 (83%)
 Frame = +3

Query: 42  ARREPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKE 221
           A +   ++VQ FGRKKTA AV +CKRG G++++NG P++L +P +L++K+ EPILLLGK 
Sbjct: 2   ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKH 61

Query: 222 KFSMVDIRVTVKGGGHVXQVYAIRQAISKALIAFYQKYVXEASKKEIKDILXQYDRSLLV 401
           +F+ V++R+ V GGGH  QVYAIRQ+I+KAL+A+YQKYV E SKKEIKDIL +YDR+LLV
Sbjct: 62  RFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLV 121

Query: 402 ADPRRCEPKKFGGPG 446
           ADPRRCEPKKFGG G
Sbjct: 122 ADPRRCEPKKFGGRG 136


>At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)
          Length = 146

 Score =  194 bits (474), Expect = 3e-50
 Identities = 86/135 (63%), Positives = 113/135 (83%)
 Frame = +3

Query: 42  ARREPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKE 221
           A +   ++VQ FGRKKTA AV +CKRG G++++NG P++L +P +L++K+ EP+LLLGK 
Sbjct: 2   ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKH 61

Query: 222 KFSMVDIRVTVKGGGHVXQVYAIRQAISKALIAFYQKYVXEASKKEIKDILXQYDRSLLV 401
           +F+ V++R+ V GGGH  QVYAIRQ+I+KAL+A+YQKYV E SKKEIKDIL +YDR+LLV
Sbjct: 62  RFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLV 121

Query: 402 ADPRRCEPKKFGGPG 446
           ADPRRCEPKKFGG G
Sbjct: 122 ADPRRCEPKKFGGRG 136


>At3g49080.1 68416.m05362 ribosomal protein S9 family protein
           contains Pfam profile PF00380: ribosomal protein S9
          Length = 430

 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 28/79 (35%), Positives = 42/79 (53%)
 Frame = +3

Query: 78  GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 257
           GR+K + A  + + G G  +VN +  D+  P +L ++      L   +     DI+ TVK
Sbjct: 310 GRRKCSIARVWIQPGEGKFQVNEKEFDVYFP-MLDHRAALLRPLAETKTLGRWDIKCTVK 368

Query: 258 GGGHVXQVYAIRQAISKAL 314
           GGG   QV AI+  IS+AL
Sbjct: 369 GGGTTGQVGAIQLGISRAL 387


>At1g43570.1 68414.m05001 hypothetical protein
          Length = 348

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -2

Query: 418 QRRGSATSKLLSYCXRMSLISFFEASXTYFW*KAIR 311
           +R  S T + LSYC R+ LI     S T FW  A R
Sbjct: 19  KRISSWTGRFLSYCGRLQLIKSVLMSITNFWSSAFR 54


>At1g50650.1 68414.m05694 stigma-specific Stig1 family protein low
           similarity to stigma-specific protein STIG1 [Nicotiana
           tabacum] GI:496647; contains Pfam profile PF04885:
           Stigma-specific protein, Stig1
          Length = 174

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = -3

Query: 138 HAAFHDHACNTQLRWRFSYVRILGRPGWAHVLPPAQQPF 22
           H   HD+  NT   W  S+++      W    PP  +P+
Sbjct: 22  HVLGHDNQLNTTSSWLKSHIKAATTTNWGRPKPPMCKPW 60


>At3g24255.1 68416.m03045 expressed protein
          Length = 836

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -2

Query: 415 RRGSATSKLLSYCXRMSLISFFEASXTYFW*KAIRAFEIACL 290
           R G  T++ LS+  R+ LIS    S T FW  A R    AC+
Sbjct: 142 RIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFR-LPSACI 182


>At1g49430.1 68414.m05541 long-chain-fatty-acid--CoA ligase /
           long-chain acyl-CoA synthetase nearly identical to acyl
           CoA synthetase (MF45P) GI:1617268 from [Brassica napus]
          Length = 665

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +2

Query: 5   SVFLCQNGCCAGGKT*AHPGRPSIRT*ENRHRSCVLQAWSWN 130
           S+  CQ GC +  KT    G  S    E     CV   +SWN
Sbjct: 164 SILSCQKGCSSNLKTIVSFGEVSSTQKEEAKNQCV-SLFSWN 204


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,008,350
Number of Sequences: 28952
Number of extensions: 257026
Number of successful extensions: 695
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)