Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_K09
(645 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y07595-1|CAA68870.1| 462|Homo sapiens transcription factor TFII... 175 8e-44
BT007321-1|AAP35985.1| 462|Homo sapiens general transcription f... 175 8e-44
BC016302-1|AAH16302.1| 462|Homo sapiens general transcription f... 175 8e-44
BC004935-1|AAH04935.1| 462|Homo sapiens general transcription f... 175 8e-44
BA000025-65|BAB63317.1| 462|Homo sapiens Transcription factor I... 175 8e-44
AY124590-1|AAM64222.1| 462|Homo sapiens general transcription f... 175 8e-44
AL773541-3|CAI18452.1| 462|Homo sapiens general transcription f... 175 8e-44
AL669830-2|CAI18003.1| 462|Homo sapiens general transcription f... 175 8e-44
AL662854-11|CAI17435.1| 462|Homo sapiens general transcription ... 175 8e-44
AK222607-1|BAD96327.1| 462|Homo sapiens general transcription f... 175 8e-44
AB202101-1|BAE78622.1| 462|Homo sapiens general transcription f... 175 8e-44
AB103609-1|BAF31271.1| 462|Homo sapiens TFIIH protein protein. 175 8e-44
AB088103-1|BAC54936.1| 462|Homo sapiens transcription factor II... 175 8e-44
AB209479-1|BAD92716.1| 1653|Homo sapiens VARS2L protein variant ... 131 2e-30
AL669830-1|CAM25402.1| 138|Homo sapiens general transcription f... 122 8e-28
AL662854-10|CAM24840.1| 138|Homo sapiens general transcription ... 122 8e-28
AL512764-1|CAC21681.1| 793|Homo sapiens hypothetical protein pr... 34 0.50
BC128608-1|AAI28609.1| 441|Homo sapiens reticulon 4 receptor-li... 33 1.1
AY250219-1|AAP82836.1| 441|Homo sapiens nogo receptor-like 2 pr... 33 1.1
AF532859-1|AAP21836.1| 441|Homo sapiens Nogo-66 receptor homolo... 33 1.1
X71923-1|CAA50739.1| 750|Homo sapiens tenascin-X precursor prot... 32 2.0
U89337-3|AAB47488.1| 4289|Homo sapiens tenascin X protein. 32 2.0
AL772248-1|CAI18078.1| 4222|Homo sapiens tenascin XB protein. 32 2.0
AL662884-1|CAI18332.1| 4222|Homo sapiens tenascin XB protein. 32 2.0
AL662849-16|CAI17471.1| 4222|Homo sapiens tenascin XB protein. 32 2.0
AL662828-1|CAI17414.1| 4222|Homo sapiens tenascin XB protein. 32 2.0
AL645922-1|CAI41718.1| 4222|Homo sapiens tenascin XB protein. 32 2.0
AL049547-2|CAB89296.1| 4288|Homo sapiens dJ34F7.1.1 (tenascin XB... 32 2.0
AK127434-1|BAC86978.1| 292|Homo sapiens protein ( Homo sapiens ... 31 2.7
J03909-1|AAA36105.1| 303|Homo sapiens gamma-interferon-inducibl... 31 3.5
AK096981-1|BAC04921.1| 323|Homo sapiens protein ( Homo sapiens ... 31 4.6
AK055082-1|BAB70851.1| 139|Homo sapiens protein ( Homo sapiens ... 31 4.6
AK131464-1|BAD18609.1| 378|Homo sapiens protein ( Homo sapiens ... 30 6.1
AK126408-1|BAC86543.1| 131|Homo sapiens protein ( Homo sapiens ... 30 6.1
BC132727-1|AAI32728.1| 1214|Homo sapiens transient receptor pote... 30 8.1
AY297046-1|AAP44475.1| 1069|Homo sapiens transient receptor pote... 30 8.1
AY297045-1|AAP44474.1| 1214|Homo sapiens transient receptor pote... 30 8.1
AY297044-1|AAP44473.1| 1040|Homo sapiens transient receptor pote... 30 8.1
AY046396-1|AAL02142.1| 1040|Homo sapiens TRP-related cation infl... 30 8.1
AL590989-2|CAH70606.1| 1438|Homo sapiens patched domain containi... 30 8.1
AL031735-1|CAI22474.1| 1438|Homo sapiens patched domain containi... 30 8.1
AK000048-1|BAA90907.1| 1016|Homo sapiens protein ( Homo sapiens ... 30 8.1
AJ575813-1|CAE05941.1| 1214|Homo sapiens transient receptor pote... 30 8.1
AF497623-1|AAM18083.1| 1214|Homo sapiens cation channel TRPM4B p... 30 8.1
AB037758-1|BAA92575.1| 1438|Homo sapiens KIAA1337 protein protein. 30 8.1
>Y07595-1|CAA68870.1| 462|Homo sapiens transcription factor TFIIH
protein.
Length = 462
Score = 175 bits (427), Expect = 8e-44
Identities = 83/167 (49%), Positives = 117/167 (70%), Gaps = 1/167 (0%)
Frame = +2
Query: 140 LQCKDLHEYLKSRSPQFLETLYNYPTICLAVYRELPELARHFVIRLLFVEQPVPQAVVTS 319
LQC++L E+L SP L+ LY +P CLAV+RELP LA+++V+R+LF+EQP+PQA V
Sbjct: 14 LQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAAVAL 73
Query: 320 WVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNLKVSLLGGGRAWS-MS 496
WV + ++K Q ++ LS L +W +PGG+ G +L F++NL+++LLGGG+AWS +
Sbjct: 74 WVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWSDDT 133
Query: 497 SSLEPDGKARDVSFLDAYALERWECVLHYMVGSAQTEGISADAVRIL 637
S L PD ARDV LD YA ERWE VLH+MVGS + +S D ++L
Sbjct: 134 SQLGPDKHARDVPSLDKYAEERWEVVLHFMVGS-PSAAVSQDLAQLL 179
>BT007321-1|AAP35985.1| 462|Homo sapiens general transcription
factor IIH, polypeptide 4, 52kDa protein.
Length = 462
Score = 175 bits (427), Expect = 8e-44
Identities = 83/167 (49%), Positives = 117/167 (70%), Gaps = 1/167 (0%)
Frame = +2
Query: 140 LQCKDLHEYLKSRSPQFLETLYNYPTICLAVYRELPELARHFVIRLLFVEQPVPQAVVTS 319
LQC++L E+L SP L+ LY +P CLAV+RELP LA+++V+R+LF+EQP+PQA V
Sbjct: 14 LQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAAVAL 73
Query: 320 WVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNLKVSLLGGGRAWS-MS 496
WV + ++K Q ++ LS L +W +PGG+ G +L F++NL+++LLGGG+AWS +
Sbjct: 74 WVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWSDDT 133
Query: 497 SSLEPDGKARDVSFLDAYALERWECVLHYMVGSAQTEGISADAVRIL 637
S L PD ARDV LD YA ERWE VLH+MVGS + +S D ++L
Sbjct: 134 SQLGPDKHARDVPSLDKYAEERWEVVLHFMVGS-PSAAVSQDLAQLL 179
>BC016302-1|AAH16302.1| 462|Homo sapiens general transcription
factor IIH, polypeptide 4, 52kDa protein.
Length = 462
Score = 175 bits (427), Expect = 8e-44
Identities = 83/167 (49%), Positives = 117/167 (70%), Gaps = 1/167 (0%)
Frame = +2
Query: 140 LQCKDLHEYLKSRSPQFLETLYNYPTICLAVYRELPELARHFVIRLLFVEQPVPQAVVTS 319
LQC++L E+L SP L+ LY +P CLAV+RELP LA+++V+R+LF+EQP+PQA V
Sbjct: 14 LQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAAVAL 73
Query: 320 WVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNLKVSLLGGGRAWS-MS 496
WV + ++K Q ++ LS L +W +PGG+ G +L F++NL+++LLGGG+AWS +
Sbjct: 74 WVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWSDDT 133
Query: 497 SSLEPDGKARDVSFLDAYALERWECVLHYMVGSAQTEGISADAVRIL 637
S L PD ARDV LD YA ERWE VLH+MVGS + +S D ++L
Sbjct: 134 SQLGPDKHARDVPSLDKYAEERWEVVLHFMVGS-PSAAVSQDLAQLL 179
>BC004935-1|AAH04935.1| 462|Homo sapiens general transcription
factor IIH, polypeptide 4, 52kDa protein.
Length = 462
Score = 175 bits (427), Expect = 8e-44
Identities = 83/167 (49%), Positives = 117/167 (70%), Gaps = 1/167 (0%)
Frame = +2
Query: 140 LQCKDLHEYLKSRSPQFLETLYNYPTICLAVYRELPELARHFVIRLLFVEQPVPQAVVTS 319
LQC++L E+L SP L+ LY +P CLAV+RELP LA+++V+R+LF+EQP+PQA V
Sbjct: 14 LQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAAVAL 73
Query: 320 WVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNLKVSLLGGGRAWS-MS 496
WV + ++K Q ++ LS L +W +PGG+ G +L F++NL+++LLGGG+AWS +
Sbjct: 74 WVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWSDDT 133
Query: 497 SSLEPDGKARDVSFLDAYALERWECVLHYMVGSAQTEGISADAVRIL 637
S L PD ARDV LD YA ERWE VLH+MVGS + +S D ++L
Sbjct: 134 SQLGPDKHARDVPSLDKYAEERWEVVLHFMVGS-PSAAVSQDLAQLL 179
>BA000025-65|BAB63317.1| 462|Homo sapiens Transcription factor II H
protein.
Length = 462
Score = 175 bits (427), Expect = 8e-44
Identities = 83/167 (49%), Positives = 117/167 (70%), Gaps = 1/167 (0%)
Frame = +2
Query: 140 LQCKDLHEYLKSRSPQFLETLYNYPTICLAVYRELPELARHFVIRLLFVEQPVPQAVVTS 319
LQC++L E+L SP L+ LY +P CLAV+RELP LA+++V+R+LF+EQP+PQA V
Sbjct: 14 LQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAAVAL 73
Query: 320 WVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNLKVSLLGGGRAWS-MS 496
WV + ++K Q ++ LS L +W +PGG+ G +L F++NL+++LLGGG+AWS +
Sbjct: 74 WVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWSDDT 133
Query: 497 SSLEPDGKARDVSFLDAYALERWECVLHYMVGSAQTEGISADAVRIL 637
S L PD ARDV LD YA ERWE VLH+MVGS + +S D ++L
Sbjct: 134 SQLGPDKHARDVPSLDKYAEERWEVVLHFMVGS-PSAAVSQDLAQLL 179
>AY124590-1|AAM64222.1| 462|Homo sapiens general transcription
factor IIH, polypeptide 4 (52kD subunit) protein.
Length = 462
Score = 175 bits (427), Expect = 8e-44
Identities = 83/167 (49%), Positives = 117/167 (70%), Gaps = 1/167 (0%)
Frame = +2
Query: 140 LQCKDLHEYLKSRSPQFLETLYNYPTICLAVYRELPELARHFVIRLLFVEQPVPQAVVTS 319
LQC++L E+L SP L+ LY +P CLAV+RELP LA+++V+R+LF+EQP+PQA V
Sbjct: 14 LQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAAVAL 73
Query: 320 WVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNLKVSLLGGGRAWS-MS 496
WV + ++K Q ++ LS L +W +PGG+ G +L F++NL+++LLGGG+AWS +
Sbjct: 74 WVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWSDDT 133
Query: 497 SSLEPDGKARDVSFLDAYALERWECVLHYMVGSAQTEGISADAVRIL 637
S L PD ARDV LD YA ERWE VLH+MVGS + +S D ++L
Sbjct: 134 SQLGPDKHARDVPSLDKYAEERWEVVLHFMVGS-PSAAVSQDLAQLL 179
>AL773541-3|CAI18452.1| 462|Homo sapiens general transcription
factor IIH, polypeptide 4, 52kDa protein.
Length = 462
Score = 175 bits (427), Expect = 8e-44
Identities = 83/167 (49%), Positives = 117/167 (70%), Gaps = 1/167 (0%)
Frame = +2
Query: 140 LQCKDLHEYLKSRSPQFLETLYNYPTICLAVYRELPELARHFVIRLLFVEQPVPQAVVTS 319
LQC++L E+L SP L+ LY +P CLAV+RELP LA+++V+R+LF+EQP+PQA V
Sbjct: 14 LQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAAVAL 73
Query: 320 WVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNLKVSLLGGGRAWS-MS 496
WV + ++K Q ++ LS L +W +PGG+ G +L F++NL+++LLGGG+AWS +
Sbjct: 74 WVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWSDDT 133
Query: 497 SSLEPDGKARDVSFLDAYALERWECVLHYMVGSAQTEGISADAVRIL 637
S L PD ARDV LD YA ERWE VLH+MVGS + +S D ++L
Sbjct: 134 SQLGPDKHARDVPSLDKYAEERWEVVLHFMVGS-PSAAVSQDLAQLL 179
>AL669830-2|CAI18003.1| 462|Homo sapiens general transcription
factor IIH, polypeptide 4, 52kDa protein.
Length = 462
Score = 175 bits (427), Expect = 8e-44
Identities = 83/167 (49%), Positives = 117/167 (70%), Gaps = 1/167 (0%)
Frame = +2
Query: 140 LQCKDLHEYLKSRSPQFLETLYNYPTICLAVYRELPELARHFVIRLLFVEQPVPQAVVTS 319
LQC++L E+L SP L+ LY +P CLAV+RELP LA+++V+R+LF+EQP+PQA V
Sbjct: 14 LQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAAVAL 73
Query: 320 WVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNLKVSLLGGGRAWS-MS 496
WV + ++K Q ++ LS L +W +PGG+ G +L F++NL+++LLGGG+AWS +
Sbjct: 74 WVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWSDDT 133
Query: 497 SSLEPDGKARDVSFLDAYALERWECVLHYMVGSAQTEGISADAVRIL 637
S L PD ARDV LD YA ERWE VLH+MVGS + +S D ++L
Sbjct: 134 SQLGPDKHARDVPSLDKYAEERWEVVLHFMVGS-PSAAVSQDLAQLL 179
>AL662854-11|CAI17435.1| 462|Homo sapiens general transcription
factor IIH, polypeptide 4, 52kDa protein.
Length = 462
Score = 175 bits (427), Expect = 8e-44
Identities = 83/167 (49%), Positives = 117/167 (70%), Gaps = 1/167 (0%)
Frame = +2
Query: 140 LQCKDLHEYLKSRSPQFLETLYNYPTICLAVYRELPELARHFVIRLLFVEQPVPQAVVTS 319
LQC++L E+L SP L+ LY +P CLAV+RELP LA+++V+R+LF+EQP+PQA V
Sbjct: 14 LQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAAVAL 73
Query: 320 WVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNLKVSLLGGGRAWS-MS 496
WV + ++K Q ++ LS L +W +PGG+ G +L F++NL+++LLGGG+AWS +
Sbjct: 74 WVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWSDDT 133
Query: 497 SSLEPDGKARDVSFLDAYALERWECVLHYMVGSAQTEGISADAVRIL 637
S L PD ARDV LD YA ERWE VLH+MVGS + +S D ++L
Sbjct: 134 SQLGPDKHARDVPSLDKYAEERWEVVLHFMVGS-PSAAVSQDLAQLL 179
>AK222607-1|BAD96327.1| 462|Homo sapiens general transcription
factor IIH, polypeptide 4, 52kDa variant protein.
Length = 462
Score = 175 bits (427), Expect = 8e-44
Identities = 83/167 (49%), Positives = 117/167 (70%), Gaps = 1/167 (0%)
Frame = +2
Query: 140 LQCKDLHEYLKSRSPQFLETLYNYPTICLAVYRELPELARHFVIRLLFVEQPVPQAVVTS 319
LQC++L E+L SP L+ LY +P CLAV+RELP LA+++V+R+LF+EQP+PQA V
Sbjct: 14 LQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAAVAL 73
Query: 320 WVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNLKVSLLGGGRAWS-MS 496
WV + ++K Q ++ LS L +W +PGG+ G +L F++NL+++LLGGG+AWS +
Sbjct: 74 WVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWSDDT 133
Query: 497 SSLEPDGKARDVSFLDAYALERWECVLHYMVGSAQTEGISADAVRIL 637
S L PD ARDV LD YA ERWE VLH+MVGS + +S D ++L
Sbjct: 134 SQLGPDKHARDVPSLDKYAEERWEVVLHFMVGS-PSAAVSQDLAQLL 179
>AB202101-1|BAE78622.1| 462|Homo sapiens general transcription
factor IIH, polypeptide 4, 52kDa protein.
Length = 462
Score = 175 bits (427), Expect = 8e-44
Identities = 83/167 (49%), Positives = 117/167 (70%), Gaps = 1/167 (0%)
Frame = +2
Query: 140 LQCKDLHEYLKSRSPQFLETLYNYPTICLAVYRELPELARHFVIRLLFVEQPVPQAVVTS 319
LQC++L E+L SP L+ LY +P CLAV+RELP LA+++V+R+LF+EQP+PQA V
Sbjct: 14 LQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAAVAL 73
Query: 320 WVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNLKVSLLGGGRAWS-MS 496
WV + ++K Q ++ LS L +W +PGG+ G +L F++NL+++LLGGG+AWS +
Sbjct: 74 WVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWSDDT 133
Query: 497 SSLEPDGKARDVSFLDAYALERWECVLHYMVGSAQTEGISADAVRIL 637
S L PD ARDV LD YA ERWE VLH+MVGS + +S D ++L
Sbjct: 134 SQLGPDKHARDVPSLDKYAEERWEVVLHFMVGS-PSAAVSQDLAQLL 179
>AB103609-1|BAF31271.1| 462|Homo sapiens TFIIH protein protein.
Length = 462
Score = 175 bits (427), Expect = 8e-44
Identities = 83/167 (49%), Positives = 117/167 (70%), Gaps = 1/167 (0%)
Frame = +2
Query: 140 LQCKDLHEYLKSRSPQFLETLYNYPTICLAVYRELPELARHFVIRLLFVEQPVPQAVVTS 319
LQC++L E+L SP L+ LY +P CLAV+RELP LA+++V+R+LF+EQP+PQA V
Sbjct: 14 LQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAAVAL 73
Query: 320 WVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNLKVSLLGGGRAWS-MS 496
WV + ++K Q ++ LS L +W +PGG+ G +L F++NL+++LLGGG+AWS +
Sbjct: 74 WVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWSDDT 133
Query: 497 SSLEPDGKARDVSFLDAYALERWECVLHYMVGSAQTEGISADAVRIL 637
S L PD ARDV LD YA ERWE VLH+MVGS + +S D ++L
Sbjct: 134 SQLGPDKHARDVPSLDKYAEERWEVVLHFMVGS-PSAAVSQDLAQLL 179
>AB088103-1|BAC54936.1| 462|Homo sapiens transcription factor II H
protein.
Length = 462
Score = 175 bits (427), Expect = 8e-44
Identities = 83/167 (49%), Positives = 117/167 (70%), Gaps = 1/167 (0%)
Frame = +2
Query: 140 LQCKDLHEYLKSRSPQFLETLYNYPTICLAVYRELPELARHFVIRLLFVEQPVPQAVVTS 319
LQC++L E+L SP L+ LY +P CLAV+RELP LA+++V+R+LF+EQP+PQA V
Sbjct: 14 LQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAAVAL 73
Query: 320 WVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNLKVSLLGGGRAWS-MS 496
WV + ++K Q ++ LS L +W +PGG+ G +L F++NL+++LLGGG+AWS +
Sbjct: 74 WVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWSDDT 133
Query: 497 SSLEPDGKARDVSFLDAYALERWECVLHYMVGSAQTEGISADAVRIL 637
S L PD ARDV LD YA ERWE VLH+MVGS + +S D ++L
Sbjct: 134 SQLGPDKHARDVPSLDKYAEERWEVVLHFMVGS-PSAAVSQDLAQLL 179
>AB209479-1|BAD92716.1| 1653|Homo sapiens VARS2L protein variant
protein.
Length = 1653
Score = 131 bits (317), Expect = 2e-30
Identities = 63/132 (47%), Positives = 91/132 (68%), Gaps = 1/132 (0%)
Frame = +2
Query: 245 PELARHFVIRLLFVEQPVPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGW 424
P L +++V+R+LF+EQP+PQA V WV + ++K Q ++ LS L +W +PGG+ G
Sbjct: 96 PILGKNWVMRMLFLEQPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGL 155
Query: 425 MLAQSFKKNLKVSLLGGGRAWS-MSSSLEPDGKARDVSFLDAYALERWECVLHYMVGSAQ 601
+L F++NL+++LLGGG+AWS +S L PD ARDV LD YA ERWE VLH+MVGS
Sbjct: 156 ILNPIFRQNLRIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGS-P 214
Query: 602 TEGISADAVRIL 637
+ +S D ++L
Sbjct: 215 SAAVSQDLAQLL 226
>AL669830-1|CAM25402.1| 138|Homo sapiens general transcription
factor IIH, polypeptide 4, 52kDa protein.
Length = 138
Score = 122 bits (295), Expect = 8e-28
Identities = 53/112 (47%), Positives = 80/112 (71%)
Frame = +2
Query: 140 LQCKDLHEYLKSRSPQFLETLYNYPTICLAVYRELPELARHFVIRLLFVEQPVPQAVVTS 319
LQC++L E+L SP L+ LY +P CLAV+RELP LA+++V+R+LF+EQP+PQA V
Sbjct: 14 LQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAAVAL 73
Query: 320 WVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNLKVSLLGG 475
WV + ++K Q ++ LS L +W +PGG+ G +L F++NL+++LLGG
Sbjct: 74 WVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGG 125
>AL662854-10|CAM24840.1| 138|Homo sapiens general transcription
factor IIH, polypeptide 4, 52kDa protein.
Length = 138
Score = 122 bits (295), Expect = 8e-28
Identities = 53/112 (47%), Positives = 80/112 (71%)
Frame = +2
Query: 140 LQCKDLHEYLKSRSPQFLETLYNYPTICLAVYRELPELARHFVIRLLFVEQPVPQAVVTS 319
LQC++L E+L SP L+ LY +P CLAV+RELP LA+++V+R+LF+EQP+PQA V
Sbjct: 14 LQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAAVAL 73
Query: 320 WVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNLKVSLLGG 475
WV + ++K Q ++ LS L +W +PGG+ G +L F++NL+++LLGG
Sbjct: 74 WVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGG 125
>AL512764-1|CAC21681.1| 793|Homo sapiens hypothetical protein
protein.
Length = 793
Score = 33.9 bits (74), Expect = 0.50
Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = -3
Query: 601 LRAAHHVVQHALPALQRVRVQERHVPGLPVRLQRRRHAPRPASPKQ*HFEVLFKRLCE-H 425
LR AH AL R+R++ +P RR A RPA + H L L H
Sbjct: 670 LRGAHWHAGLLRHALHRLRLRGHCRAAVPAPAAHRRRAGRPARTQARHHRALPGPLAPVH 729
Query: 424 PARHAPRYGGLLPH 383
P R GG+LPH
Sbjct: 730 PLRQP---GGVLPH 740
>BC128608-1|AAI28609.1| 441|Homo sapiens reticulon 4 receptor-like
1 protein.
Length = 441
Score = 32.7 bits (71), Expect = 1.1
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = -3
Query: 604 GLRAAHHVVQHALPALQRVRVQERHVPGLPVRLQRRRHAPRPASPK 467
G + H + H L R +E H P P R + H PRP K
Sbjct: 306 GPASPHQIKSHTLTTTDRAARKEHHSPHGPTRSKGHPHGPRPGHRK 351
>AY250219-1|AAP82836.1| 441|Homo sapiens nogo receptor-like 2
protein.
Length = 441
Score = 32.7 bits (71), Expect = 1.1
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = -3
Query: 604 GLRAAHHVVQHALPALQRVRVQERHVPGLPVRLQRRRHAPRPASPK 467
G + H + H L R +E H P P R + H PRP K
Sbjct: 306 GPASPHQIKSHTLTTTDRAARKEHHSPHGPTRSKGHPHGPRPGHRK 351
>AF532859-1|AAP21836.1| 441|Homo sapiens Nogo-66 receptor homolog-2
protein.
Length = 441
Score = 32.7 bits (71), Expect = 1.1
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = -3
Query: 604 GLRAAHHVVQHALPALQRVRVQERHVPGLPVRLQRRRHAPRPASPK 467
G + H + H L R +E H P P R + H PRP K
Sbjct: 306 GPASPHQIKSHTLTTTDRAARKEHHSPHGPTRSKGHPHGPRPGHRK 351
>X71923-1|CAA50739.1| 750|Homo sapiens tenascin-X precursor
protein.
Length = 750
Score = 31.9 bits (69), Expect = 2.0
Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Frame = +3
Query: 384 CGRRPPYRGACRAGCSHSRLKRTSKCHCLGEAGRGA-CRRRWSRTGRPGTCRSWTRTRWS 560
CG+ P AC GC L R +C C+ E RG C + PG CR R
Sbjct: 681 CGQEEPPASACPGGCGPRELCRAGQCVCV-EGFRGPDCAIQTC----PGDCRG--RGECH 733
Query: 561 AGSACC 578
GS C
Sbjct: 734 DGSCVC 739
>U89337-3|AAB47488.1| 4289|Homo sapiens tenascin X protein.
Length = 4289
Score = 31.9 bits (69), Expect = 2.0
Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Frame = +3
Query: 384 CGRRPPYRGACRAGCSHSRLKRTSKCHCLGEAGRGA-CRRRWSRTGRPGTCRSWTRTRWS 560
CG+ P AC GC L R +C C+ E RG C + PG CR R
Sbjct: 678 CGQEEPPASACPGGCGPRELCRAGQCVCV-EGFRGPDCAIQTC----PGDCRG--RGECH 730
Query: 561 AGSACC 578
GS C
Sbjct: 731 DGSCVC 736
>AL772248-1|CAI18078.1| 4222|Homo sapiens tenascin XB protein.
Length = 4222
Score = 31.9 bits (69), Expect = 2.0
Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Frame = +3
Query: 384 CGRRPPYRGACRAGCSHSRLKRTSKCHCLGEAGRGA-CRRRWSRTGRPGTCRSWTRTRWS 560
CG+ P AC GC L R +C C+ E RG C + PG CR R
Sbjct: 678 CGQEEPPASACPGGCGPRELCRAGQCVCV-EGFRGPDCAIQTC----PGDCRG--RGECH 730
Query: 561 AGSACC 578
GS C
Sbjct: 731 DGSCVC 736
>AL662884-1|CAI18332.1| 4222|Homo sapiens tenascin XB protein.
Length = 4222
Score = 31.9 bits (69), Expect = 2.0
Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Frame = +3
Query: 384 CGRRPPYRGACRAGCSHSRLKRTSKCHCLGEAGRGA-CRRRWSRTGRPGTCRSWTRTRWS 560
CG+ P AC GC L R +C C+ E RG C + PG CR R
Sbjct: 678 CGQEEPPASACPGGCGPRELCRAGQCVCV-EGFRGPDCAIQTC----PGDCRG--RGECH 730
Query: 561 AGSACC 578
GS C
Sbjct: 731 DGSCVC 736
>AL662849-16|CAI17471.1| 4222|Homo sapiens tenascin XB protein.
Length = 4222
Score = 31.9 bits (69), Expect = 2.0
Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Frame = +3
Query: 384 CGRRPPYRGACRAGCSHSRLKRTSKCHCLGEAGRGA-CRRRWSRTGRPGTCRSWTRTRWS 560
CG+ P AC GC L R +C C+ E RG C + PG CR R
Sbjct: 678 CGQEEPPASACPGGCGPRELCRAGQCVCV-EGFRGPDCAIQTC----PGDCRG--RGECH 730
Query: 561 AGSACC 578
GS C
Sbjct: 731 DGSCVC 736
>AL662828-1|CAI17414.1| 4222|Homo sapiens tenascin XB protein.
Length = 4222
Score = 31.9 bits (69), Expect = 2.0
Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Frame = +3
Query: 384 CGRRPPYRGACRAGCSHSRLKRTSKCHCLGEAGRGA-CRRRWSRTGRPGTCRSWTRTRWS 560
CG+ P AC GC L R +C C+ E RG C + PG CR R
Sbjct: 678 CGQEEPPASACPGGCGPRELCRAGQCVCV-EGFRGPDCAIQTC----PGDCRG--RGECH 730
Query: 561 AGSACC 578
GS C
Sbjct: 731 DGSCVC 736
>AL645922-1|CAI41718.1| 4222|Homo sapiens tenascin XB protein.
Length = 4222
Score = 31.9 bits (69), Expect = 2.0
Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Frame = +3
Query: 384 CGRRPPYRGACRAGCSHSRLKRTSKCHCLGEAGRGA-CRRRWSRTGRPGTCRSWTRTRWS 560
CG+ P AC GC L R +C C+ E RG C + PG CR R
Sbjct: 678 CGQEEPPASACPGGCGPRELCRAGQCVCV-EGFRGPDCAIQTC----PGDCRG--RGECH 730
Query: 561 AGSACC 578
GS C
Sbjct: 731 DGSCVC 736
>AL049547-2|CAB89296.1| 4288|Homo sapiens dJ34F7.1.1 (tenascin XB
(isoform 1)) protein.
Length = 4288
Score = 31.9 bits (69), Expect = 2.0
Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Frame = +3
Query: 384 CGRRPPYRGACRAGCSHSRLKRTSKCHCLGEAGRGA-CRRRWSRTGRPGTCRSWTRTRWS 560
CG+ P AC GC L R +C C+ E RG C + PG CR R
Sbjct: 677 CGQEEPPASACPGGCGPRELCRAGQCVCV-EGFRGPDCAIQTC----PGDCRG--RGECH 729
Query: 561 AGSACC 578
GS C
Sbjct: 730 DGSCVC 735
>AK127434-1|BAC86978.1| 292|Homo sapiens protein ( Homo sapiens
cDNA FLJ45526 fis, clone BRTHA2027227. ).
Length = 292
Score = 31.5 bits (68), Expect = 2.7
Identities = 20/63 (31%), Positives = 23/63 (36%)
Frame = +3
Query: 324 SRKHMPKNKQKHALHCQSSPCGRRPPYRGACRAGCSHSRLKRTSKCHCLGEAGRGACRRR 503
SR H+P C S P GRR CR C + H L A R R
Sbjct: 192 SRGHLPLPLPTPTTPCISQPPGRR------CRPHCGKELFRAPGALHFLPRRHPAAVRHR 245
Query: 504 WSR 512
W+R
Sbjct: 246 WTR 248
>J03909-1|AAA36105.1| 303|Homo sapiens gamma-interferon-inducible
protein precursor protein.
Length = 303
Score = 31.1 bits (67), Expect = 3.5
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Frame = +3
Query: 369 CQSSPCGRRPPYRGACRAG---CSHSRLKRTSKCHCLGEAGRGACRRRWSRTGR 521
C S+P G R Y G C G +H+R + +C R+W GR
Sbjct: 176 CSSTPQGCRQNYHGVCNGGPRHAAHARQRPADRCSPATARVCALGHRQWETLGR 229
>AK096981-1|BAC04921.1| 323|Homo sapiens protein ( Homo sapiens
cDNA FLJ39662 fis, clone SMINT2007140. ).
Length = 323
Score = 30.7 bits (66), Expect = 4.6
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +3
Query: 399 PYRGACRAGCSHSRLKRTSKCHCLGEAGRGA-CRRRWSRTGRPG 527
P G+ R GC R++K CLG G A C R + G PG
Sbjct: 68 PGTGSGRGGCRCGSSARSAKLLCLGGRGHWATCSRGCPQAGLPG 111
>AK055082-1|BAB70851.1| 139|Homo sapiens protein ( Homo sapiens
cDNA FLJ30520 fis, clone BRAWH2000866. ).
Length = 139
Score = 30.7 bits (66), Expect = 4.6
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -1
Query: 462 DTLRFFLNDCASIQPGMPPGMGASCHTESSDSVVHAFACSLAYVCE 325
D+L F C I +P G H ++S +H F CSL+ E
Sbjct: 57 DSLATFTPPCPRITLFLPVGFATHHHLKASSLWIHLFTCSLSVPLE 102
>AK131464-1|BAD18609.1| 378|Homo sapiens protein ( Homo sapiens
cDNA FLJ16629 fis, clone TESTI4019657, highly similar
to Homo sapiens cyclin G associated kinase (GAK). ).
Length = 378
Score = 30.3 bits (65), Expect = 6.1
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 176 RSPQFLETLYNYPTICLA-VYRELPELARHFVIRLLFVEQPVP 301
R+P F E+ PT+C V R+LPELA+ + F+ +P P
Sbjct: 307 RAPSFGES----PTLCCCGVCRDLPELAKGRTYVVFFISEPSP 345
>AK126408-1|BAC86543.1| 131|Homo sapiens protein ( Homo sapiens
cDNA FLJ44444 fis, clone UTERU2020491. ).
Length = 131
Score = 30.3 bits (65), Expect = 6.1
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = +3
Query: 471 GEAGRGACRRRWSRTGRPGTCRSWTRTRWSAGS 569
G GR C R GRP C W R RW+ GS
Sbjct: 62 GRGGRPLCAGP-GRGGRPSEC--WARLRWAVGS 91
>BC132727-1|AAI32728.1| 1214|Homo sapiens transient receptor potential
cation channel, subfamily M, member 4 protein.
Length = 1214
Score = 29.9 bits (64), Expect = 8.1
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = -3
Query: 574 HALPALQRVRVQERHVPGLPVRLQRRRHAPRPASPKQ*HFEVLFKRLCE 428
H+ PAL + H+ L +L RR +P+P+SP HF V + E
Sbjct: 1070 HSRPALAPPFIVISHLRLLLRQLCRRPRSPQPSSPALEHFRVYLSKEAE 1118
>AY297046-1|AAP44475.1| 1069|Homo sapiens transient receptor potential
cation channel subfamily M member 4 splice variant
protein.
Length = 1069
Score = 29.9 bits (64), Expect = 8.1
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = -3
Query: 574 HALPALQRVRVQERHVPGLPVRLQRRRHAPRPASPKQ*HFEVLFKRLCE 428
H+ PAL + H+ L +L RR +P+P+SP HF V + E
Sbjct: 925 HSRPALAPPFIVISHLRLLLRQLCRRPRSPQPSSPALEHFRVYLSKEAE 973
>AY297045-1|AAP44474.1| 1214|Homo sapiens transient receptor potential
cation channel subfamily M member 4 splice variant
protein.
Length = 1214
Score = 29.9 bits (64), Expect = 8.1
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = -3
Query: 574 HALPALQRVRVQERHVPGLPVRLQRRRHAPRPASPKQ*HFEVLFKRLCE 428
H+ PAL + H+ L +L RR +P+P+SP HF V + E
Sbjct: 1070 HSRPALAPPFIVISHLRLLLRQLCRRPRSPQPSSPALEHFRVYLSKEAE 1118
>AY297044-1|AAP44473.1| 1040|Homo sapiens transient receptor potential
cation channel subfamily M member 4 splice variant
protein.
Length = 1040
Score = 29.9 bits (64), Expect = 8.1
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = -3
Query: 574 HALPALQRVRVQERHVPGLPVRLQRRRHAPRPASPKQ*HFEVLFKRLCE 428
H+ PAL + H+ L +L RR +P+P+SP HF V + E
Sbjct: 896 HSRPALAPPFIVISHLRLLLRQLCRRPRSPQPSSPALEHFRVYLSKEAE 944
>AY046396-1|AAL02142.1| 1040|Homo sapiens TRP-related cation influx
channel protein.
Length = 1040
Score = 29.9 bits (64), Expect = 8.1
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = -3
Query: 574 HALPALQRVRVQERHVPGLPVRLQRRRHAPRPASPKQ*HFEVLFKRLCE 428
H+ PAL + H+ L +L RR +P+P+SP HF V + E
Sbjct: 896 HSRPALAPPFIVISHLRLLLRQLCRRPRSPQPSSPALEHFRVYLSKEAE 944
>AL590989-2|CAH70606.1| 1438|Homo sapiens patched domain containing
2 protein.
Length = 1438
Score = 29.9 bits (64), Expect = 8.1
Identities = 11/34 (32%), Positives = 14/34 (41%)
Frame = +3
Query: 477 AGRGACRRRWSRTGRPGTCRSWTRTRWSAGSACC 578
AG C R W RP W+ W+ + CC
Sbjct: 86 AGGQCCWRHWPLASRPPASGFWSTLGWAFTNPCC 119
>AL031735-1|CAI22474.1| 1438|Homo sapiens patched domain containing
2 protein.
Length = 1438
Score = 29.9 bits (64), Expect = 8.1
Identities = 11/34 (32%), Positives = 14/34 (41%)
Frame = +3
Query: 477 AGRGACRRRWSRTGRPGTCRSWTRTRWSAGSACC 578
AG C R W RP W+ W+ + CC
Sbjct: 86 AGGQCCWRHWPLASRPPASGFWSTLGWAFTNPCC 119
>AK000048-1|BAA90907.1| 1016|Homo sapiens protein ( Homo sapiens cDNA
FLJ20041 fis, clone COL00423. ).
Length = 1016
Score = 29.9 bits (64), Expect = 8.1
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = -3
Query: 574 HALPALQRVRVQERHVPGLPVRLQRRRHAPRPASPKQ*HFEVLFKRLCE 428
H+ PAL + H+ L +L RR +P+P+SP HF V + E
Sbjct: 896 HSRPALAPPFIVISHLRLLLRQLCRRPRSPQPSSPALEHFRVYLSKEAE 944
>AJ575813-1|CAE05941.1| 1214|Homo sapiens transient receptor potential
ion channel melastatin subgroup member 4 protein protein.
Length = 1214
Score = 29.9 bits (64), Expect = 8.1
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = -3
Query: 574 HALPALQRVRVQERHVPGLPVRLQRRRHAPRPASPKQ*HFEVLFKRLCE 428
H+ PAL + H+ L +L RR +P+P+SP HF V + E
Sbjct: 1070 HSRPALAPPFIVISHLRLLLRQLCRRPRSPQPSSPALEHFRVYLSKEAE 1118
>AF497623-1|AAM18083.1| 1214|Homo sapiens cation channel TRPM4B
protein.
Length = 1214
Score = 29.9 bits (64), Expect = 8.1
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = -3
Query: 574 HALPALQRVRVQERHVPGLPVRLQRRRHAPRPASPKQ*HFEVLFKRLCE 428
H+ PAL + H+ L +L RR +P+P+SP HF V + E
Sbjct: 1070 HSRPALAPPFIVISHLRLLLRQLCRRPRSPQPSSPALEHFRVYLSKEAE 1118
>AB037758-1|BAA92575.1| 1438|Homo sapiens KIAA1337 protein protein.
Length = 1438
Score = 29.9 bits (64), Expect = 8.1
Identities = 11/34 (32%), Positives = 14/34 (41%)
Frame = +3
Query: 477 AGRGACRRRWSRTGRPGTCRSWTRTRWSAGSACC 578
AG C R W RP W+ W+ + CC
Sbjct: 86 AGGQCCWRHWPLASRPPASGFWSTLGWAFTNPCC 119
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,641,011
Number of Sequences: 237096
Number of extensions: 2174419
Number of successful extensions: 6796
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 6170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6778
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7141427170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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