Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_K09
         (645 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17020.2 68417.m02567 transcription factor-related contains w...    80   1e-15
At4g17020.1 68417.m02568 transcription factor-related contains w...    80   1e-15
At1g10480.1 68414.m01180 zinc finger (C2H2 type) family protein ...    29   2.0  
At3g58160.1 68416.m06485 myosin heavy chain, putative similar to...    29   2.6  
At1g78630.1 68414.m09164 ribosomal protein L13 family protein si...    29   2.6  
At3g61910.1 68416.m06953 no apical meristem (NAM) family protein...    29   3.5  
At3g20490.1 68416.m02595 expressed protein                             29   3.5  
At2g34410.1 68415.m04217 O-acetyltransferase family protein simi...    28   6.1  
At1g68410.1 68414.m07815 protein phosphatase 2C-related / PP2C-r...    27   8.1  

>At4g17020.2 68417.m02567 transcription factor-related contains weak
           similarity to Swiss-Prot:Q92759 TFIIH basal
           transcription factor complex p52 subunit (Basic
           transcription factor 52 kDa subunit, BTF2-p52, General
           transcription factor IIH polypeptide 4) [Homo sapiens]
          Length = 462

 Score = 79.8 bits (188), Expect = 1e-15
 Identities = 45/151 (29%), Positives = 78/151 (51%), Gaps = 3/151 (1%)
 Frame = +2

Query: 191 LETLYNYPTICLAVYRELPELARHFVIRLLFVEQPVPQAVVTSWVSQTYAKEQAKACTTL 370
           L+ LYN   IC A+ R LP LA+ +V+++L+++ PVP  ++  WV      +   A   L
Sbjct: 23  LDKLYNNVFICEAILRSLPPLAKKYVLQMLYIDVPVPATMMEEWVLADGTSKHRVAIDRL 82

Query: 371 SELSVWQEAPIPGGMPGWMLAQSFKKNLKVSLLGGGRAWSMSSSLEPDGKARDVSFLDAY 550
            +L ++ E         + L  +F+ NL+  ++ GG       + +   K   +  L+ Y
Sbjct: 83  IQLRIFSEISDRKRGTSYSLNPTFQNNLQKHIISGGVLPREPMNSDNAIKLPSLQELETY 142

Query: 551 ALERWECVLHYMVGSAQTE---GISADAVRI 634
           AL++WEC L  ++ S Q E   GIS+  ++I
Sbjct: 143 ALKQWECFLLQLINSGQGEKLTGISSSMMKI 173


>At4g17020.1 68417.m02568 transcription factor-related contains weak
           similarity to Swiss-Prot:Q92759 TFIIH basal
           transcription factor complex p52 subunit (Basic
           transcription factor 52 kDa subunit, BTF2-p52, General
           transcription factor IIH polypeptide 4) [Homo sapiens]
          Length = 452

 Score = 79.8 bits (188), Expect = 1e-15
 Identities = 45/151 (29%), Positives = 78/151 (51%), Gaps = 3/151 (1%)
 Frame = +2

Query: 191 LETLYNYPTICLAVYRELPELARHFVIRLLFVEQPVPQAVVTSWVSQTYAKEQAKACTTL 370
           L+ LYN   IC A+ R LP LA+ +V+++L+++ PVP  ++  WV      +   A   L
Sbjct: 23  LDKLYNNVFICEAILRSLPPLAKKYVLQMLYIDVPVPATMMEEWVLADGTSKHRVAIDRL 82

Query: 371 SELSVWQEAPIPGGMPGWMLAQSFKKNLKVSLLGGGRAWSMSSSLEPDGKARDVSFLDAY 550
            +L ++ E         + L  +F+ NL+  ++ GG       + +   K   +  L+ Y
Sbjct: 83  IQLRIFSEISDRKRGTSYSLNPTFQNNLQKHIISGGVLPREPMNSDNAIKLPSLQELETY 142

Query: 551 ALERWECVLHYMVGSAQTE---GISADAVRI 634
           AL++WEC L  ++ S Q E   GIS+  ++I
Sbjct: 143 ALKQWECFLLQLINSGQGEKLTGISSSMMKI 173


>At1g10480.1 68414.m01180 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 211

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 19/55 (34%), Positives = 24/55 (43%)
 Frame = -1

Query: 429 SIQPGMPPGMGASCHTESSDSVVHAFACSLAYVCETQDVTTACGTGCSTNSKRIT 265
           SI P M    G S    SSD  +  F   L     T ++TTA     STN+  +T
Sbjct: 2   SINPTMSR-TGESSSGSSSDKTIKLFGFELISGSRTPEITTAESVSSSTNTTSLT 55


>At3g58160.1 68416.m06485 myosin heavy chain, putative similar to
            myosin heavy chain [Arabidopsis thaliana]
            gi|602328|emb|CAA84067.
          Length = 1242

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/64 (28%), Positives = 26/64 (40%)
 Frame = -1

Query: 636  SMRTASALMPSVCALPTM*CSTHSQRSSAYASRNDTSRAFPSGSSDDDMLHALPPPSNDT 457
            SM    + + S+   P+M  ST +          D+S    + SSD D     P PS+D 
Sbjct: 1144 SMSDQFSQLKSILRSPSMSASTMASAPVVRDDLADSSENSEASSSDSDFTFPAPSPSSDN 1203

Query: 456  LRFF 445
               F
Sbjct: 1204 FSTF 1207


>At1g78630.1 68414.m09164 ribosomal protein L13 family protein
           similar to ribosomal protein L13 GI:170132 from
           [Spinacia oleracea]
          Length = 241

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -3

Query: 499 RRHAPRPASPKQ*HFEVLFKRLCEHPARHAPRYGGLLPHGEL 374
           RRH+ RP       F+ L +R+ E    HA R  G+LP G L
Sbjct: 165 RRHSGRPGGMTVETFDQLQQRIPERIVEHAVR--GMLPKGRL 204


>At3g61910.1 68416.m06953 no apical meristem (NAM) family protein no
           apical meristem (NAM) - Petunia hybrida, EMBL:PHDNANAM
          Length = 334

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +2

Query: 275 LLFVEQPVPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEA-PIPGGMPGWMLAQSFKKN 451
           L+F +   P    + W+   Y  +++   ++  +  V  E   + G   GW++ + FKKN
Sbjct: 117 LVFYKGRAPHGQKSDWIMHEYRLDESVLISSCGDHDVNVETCDVIGSDEGWVVCRVFKKN 176


>At3g20490.1 68416.m02595 expressed protein
          Length = 458

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -1

Query: 576 STHSQRSSAYASRNDTSRAFPSGSSDDDMLHALPPPSNDTLRFFLN 439
           ST  ++SSA AS +++     +G    ++ H    PS  + RFFL+
Sbjct: 257 STAQKQSSAVASSSNSGNHNLTGFQQTELFHDFSHPSPPSHRFFLH 302


>At2g34410.1 68415.m04217 O-acetyltransferase family protein similar
           to O-acetyltransferase (GI:17016934) [Homo sapiens];
           contains 11 transmembrane domains
          Length = 540

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 362 TTLSELSVWQEAPIPGGMPGWML 430
           T +S+  +W  + +P G P W+L
Sbjct: 447 TYISQFHIWLRSNVPNGQPKWLL 469


>At1g68410.1 68414.m07815 protein phosphatase 2C-related /
           PP2C-related similar to protein phosphatase-2C
           GB:AAC36697 from [Mesembryanthemum crystallinum]
          Length = 436

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = -1

Query: 570 HSQRSSAYASR----NDTSRAFPSGSSDDDMLHALP 475
           H+ +++A  +R    N    A PSG S D+ LHALP
Sbjct: 80  HNGKAAAVYTRENLLNHVISALPSGLSRDEWLHALP 115


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,602,162
Number of Sequences: 28952
Number of extensions: 280451
Number of successful extensions: 852
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)