Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_K05
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 140 2e-34
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 63 4e-11
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 60 2e-10
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 57 3e-09
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 52 1e-07
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 49 5e-07
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 48 9e-07
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 48 1e-06
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 47 2e-06
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 46 6e-06
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 45 8e-06
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 45 1e-05
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 44 1e-05
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 44 1e-05
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 44 1e-05
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 44 3e-05
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 42 1e-04
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 41 2e-04
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 40 2e-04
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 40 3e-04
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 39 5e-04
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 39 7e-04
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 38 0.001
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 38 0.001
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 36 0.007
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 36 0.007
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 36 0.007
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 36 0.007
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 36 0.007
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 35 0.009
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 33 0.036
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 33 0.036
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 32 0.062
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 32 0.083
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 32 0.083
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 30 0.25
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 30 0.33
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 29 0.44
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 28 1.3
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 27 1.8
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 27 1.8
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 27 1.8
SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 27 2.3
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 27 3.1
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 26 4.1
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 25 7.2
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 140 bits (339), Expect = 2e-34
Identities = 69/193 (35%), Positives = 111/193 (57%), Gaps = 5/193 (2%)
Frame = +3
Query: 87 NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAE-APGRDDDRKLFVGGLSWETTDKELRD 263
+ +N D +NQ + +G +S + N+ E +P +D K+F+GGL+WETTD LRD
Sbjct: 123 DGENSKNDNYNENQ-SALTGSGAMESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRD 181
Query: 264 HFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMAAGEH----TINNXKVXPXK 431
+F +GE+ V D TGRSRGF F+ FK P+ + +VM+ H I+ + P +
Sbjct: 182 YFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPKRAIPRE 241
Query: 432 AKARHGKIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXV 611
+ + K+FVGG+ + +++E NFF++FG +L + DK + +GF F+T+E+E V
Sbjct: 242 EQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAV 301
Query: 612 NDLLKTPKRTIGG 650
+ P TI G
Sbjct: 302 EATMSQPYITIHG 314
Score = 53.2 bits (122), Expect = 3e-08
Identities = 23/75 (30%), Positives = 41/75 (54%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMAA 389
K+FVGG+ + T++E R+ F +G + + D +TGR RGF F+ ++ ++ M+
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQ 307
Query: 390 GEHTINNXKVXPXKA 434
TI+ V +A
Sbjct: 308 PYITIHGKPVEVKRA 322
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 62.9 bits (146), Expect = 4e-11
Identities = 47/160 (29%), Positives = 71/160 (44%), Gaps = 25/160 (15%)
Frame = +3
Query: 189 PGRDDDRK--LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAP 362
P +D + +FVG LSW D+ L F YG I V D +GRS+G+ ++ F+ P
Sbjct: 255 PSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETP 314
Query: 363 ESIXKVMAA-GEHTINNXKV-------XPXK----AKARHGK-----------IFVGGLX 473
E+ +AA G I+ V P A+ R G +FVG L
Sbjct: 315 EAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLS 374
Query: 474 XEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITF 593
++D++ F G I + +P D + KGF ++TF
Sbjct: 375 FNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTF 414
Score = 55.2 bits (127), Expect = 8e-09
Identities = 25/64 (39%), Positives = 37/64 (57%)
Frame = +3
Query: 213 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMAAG 392
+FVG LS+ T+ +L FG G+I SI + TDP +GR +GF ++ F +S K +
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMN 427
Query: 393 EHTI 404
H I
Sbjct: 428 GHFI 431
Score = 36.7 bits (81), Expect = 0.003
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQ 605
+FVG L + D + F E+GTI+ + D + KG+ ++ FE+ +
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPE 315
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 60.5 bits (140), Expect = 2e-10
Identities = 28/97 (28%), Positives = 50/97 (51%)
Frame = +3
Query: 111 ITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIX 290
I ++ +G S ++ ++ LFVG L +ETTD +L++HFG G+I
Sbjct: 196 IKSNTDFSGRPSKPANTLSKTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIR 255
Query: 291 SINVKTDPNTGRSRGFAFIVFKAPESIXKVMAAGEHT 401
+ + T +TG+ +GF F+ F ++ K M G ++
Sbjct: 256 RVRLMTFEDTGKCKGFGFVDFPDIDTCMKAMELGHNS 292
Score = 32.3 bits (70), Expect = 0.062
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITF 593
+FVG L E +D ++ F + G I +V + + + KGF F+ F
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 56.8 bits (131), Expect = 3e-09
Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 8/142 (5%)
Frame = +3
Query: 213 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMAAG 392
L+VG L T+ L + F + G + SI V D T RS G+A++ F E K +
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 393 EHTINNXKV--------XPXKAKARHGKIFVGGLXXEISDDEIXNFFSEFGTILQVEMPF 548
+T+ + P K G +F+ L I + + + FS FG IL ++
Sbjct: 142 NYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAV 201
Query: 549 DKTKNQRKGFCFITFESEQXVN 614
D+ N KG+ F+ F+S + N
Sbjct: 202 DELGN-AKGYGFVHFDSVESAN 222
Score = 45.6 bits (103), Expect = 6e-06
Identities = 21/57 (36%), Positives = 31/57 (54%)
Frame = +3
Query: 213 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVM 383
LF+ L E D+ L+ F A+G I S + TD G+S+GF F+ + PE K +
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAV 421
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 51.6 bits (118), Expect = 1e-07
Identities = 24/66 (36%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Frame = +3
Query: 177 SAEAPGRDDDRK--LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIV 350
S G+++DRK LFVG L +++ + L+ HF G++ S+ + TD +GR +G+AF+
Sbjct: 80 SKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVE 139
Query: 351 FKAPES 368
F P++
Sbjct: 140 FINPKT 145
Score = 41.9 bits (94), Expect = 8e-05
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Frame = +3
Query: 393 EHTINNXKVXPXKAKARHGK-------IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFD 551
+H+++N K+K + GK +FVG L + S + + F G + V +P D
Sbjct: 67 KHSVSNPPHKTLKSKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTD 126
Query: 552 KTKNQRKGFCFITF 593
KT ++KG+ F+ F
Sbjct: 127 KTSGRQKGYAFVEF 140
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 49.2 bits (112), Expect = 5e-07
Identities = 23/67 (34%), Positives = 36/67 (53%)
Frame = +3
Query: 195 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIX 374
+D R +FVG L++E ++ L +FG G I + + DP T +GFA+I FK +
Sbjct: 266 QDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVD 325
Query: 375 KVMAAGE 395
K + E
Sbjct: 326 KALLLNE 332
Score = 37.9 bits (84), Expect = 0.001
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLL 623
+FVG L E ++ + +F + G+I V + D N KGF +I F+ V+ L
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKAL 328
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 48.4 bits (110), Expect = 9e-07
Identities = 23/53 (43%), Positives = 33/53 (62%)
Frame = +3
Query: 195 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 353
RDD L V LS +T ++ELRD F +G I + + D TGR++GFAF+ +
Sbjct: 198 RDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
Score = 33.1 bits (72), Expect = 0.036
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 459 VGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITF 593
V L + ++E+ + F FG I +V + DK + KGF F+++
Sbjct: 206 VTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 48.0 bits (109), Expect = 1e-06
Identities = 18/61 (29%), Positives = 33/61 (54%)
Frame = +3
Query: 201 DDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKV 380
D + ++VG + + T +EL+ HF + G + + + D TG +GFA+I F P +
Sbjct: 53 DAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNA 112
Query: 381 M 383
+
Sbjct: 113 L 113
Score = 35.1 bits (77), Expect = 0.009
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLL 623
++VG + ++ +E+ + F+ G++ +V + DK KGF +I F V + L
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL 113
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 47.2 bits (107), Expect = 2e-06
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Frame = +3
Query: 138 NAENGGGDSQDHNSAEAPGRDDDR---KLFVGGLSWETTDKELRDHFGAYGEIXSINVKT 308
+ E+ G S D NS RD++ +FV L +E T++EL +HF +G + +
Sbjct: 251 DVEDSGDSSSDKNSINHEIRDNEGLEDTVFVRNLLFECTEQELYNHFRQFGPLAYAKLVK 310
Query: 309 DPNTGRSRGFAFIVFK 356
DP T RS G FI F+
Sbjct: 311 DPATDRSLGRGFIKFR 326
Score = 40.7 bits (91), Expect = 2e-04
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +3
Query: 213 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPE 365
LFV L+++T +L + F G I V T+P TG +RG+ F+ F E
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLE 57
Score = 34.3 bits (75), Expect = 0.015
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITF 593
+FV L + D++ NFFS+ G I + + + +G+ F+TF
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTF 53
Score = 33.1 bits (72), Expect = 0.036
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLK 626
+FV L E ++ E+ N F +FG + ++ D ++ G FI F E+ + L+
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFRYEKDCQNCLE 336
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 45.6 bits (103), Expect = 6e-06
Identities = 22/82 (26%), Positives = 41/82 (50%)
Frame = +3
Query: 120 DNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSIN 299
+++++ N E+ D ++ SA + LFV G++ + EL+ F +G + +
Sbjct: 72 EDEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVR 131
Query: 300 VKTDPNTGRSRGFAFIVFKAPE 365
+ +P T SRGF F+ F E
Sbjct: 132 IMREPVTKASRGFGFLSFSTVE 153
Score = 39.5 bits (88), Expect = 4e-04
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFES 599
+FV G+ + +DE+ FS+FGT+ V + + +GF F++F +
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFST 151
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 45.2 bits (102), Expect = 8e-06
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITF-ESEQXVNDLLK 626
++F+ L ++D++ + F FG + QV MP DK N KGF +I F +++ V L+
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383
Query: 627 TPKRTIGG 650
+ G
Sbjct: 384 LDAKPFQG 391
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 44.8 bits (101), Expect = 1e-05
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +3
Query: 144 ENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTG 323
E G G ++ P + VG LS++ T+ +L D FG + SI + DP T
Sbjct: 74 EGGMGSGYQRDAIPIPS-EPPFTAHVGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTE 130
Query: 324 RSRGFAFIVFKAPESIXKVMA-AGE 395
RSRGF ++ F+ +++ +A +GE
Sbjct: 131 RSRGFGYVEFETADTLSAALALSGE 155
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 44.4 bits (100), Expect = 1e-05
Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 20/153 (13%)
Frame = +3
Query: 201 DDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKV 380
D R +FV L+ T +EL D F G + + D +GRS+G A++ F +S+
Sbjct: 238 DRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAA 297
Query: 381 MA-AGEHTI------------NNXKVXPXKAKARHG-------KIFVGGLXXEISDDEIX 500
+A +G+ + N K AR ++ V + ++D+++
Sbjct: 298 IALSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTDEDVK 357
Query: 501 NFFSEFGTILQVEMPFDKTKNQRKGFCFITFES 599
F FG I V + D +N+ KGF +I + +
Sbjct: 358 AIFEPFGDIEFVHLQRD-DQNRSKGFGYIQYRN 389
Score = 34.3 bits (75), Expect = 0.015
Identities = 15/53 (28%), Positives = 33/53 (62%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPES 368
+L V + + TD++++ F +G+I ++++ D + RS+GF +I ++ P S
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD-DQNRSKGFGYIQYRNPIS 392
Score = 33.9 bits (74), Expect = 0.020
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLK-T 629
+FV L ++ E+ +FF + G + ++ DK + KG ++ F E V + +
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIALS 301
Query: 630 PKRTIG 647
KR +G
Sbjct: 302 GKRLLG 307
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 44.4 bits (100), Expect = 1e-05
Identities = 23/68 (33%), Positives = 38/68 (55%)
Frame = +3
Query: 168 DHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFI 347
D+N + G + ++FV +S T ++LR HF ++GE+ +++K +P TG S G I
Sbjct: 82 DYNE-NSLGPEPPTQVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCI 140
Query: 348 VFKAPESI 371
F SI
Sbjct: 141 SFDKRSSI 148
Score = 29.5 bits (63), Expect = 0.44
Identities = 9/55 (16%), Positives = 26/55 (47%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVN 614
++FV + ++ +++ F FG + +++ + G C I+F+ ++
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSIS 149
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 44.4 bits (100), Expect = 1e-05
Identities = 17/51 (33%), Positives = 32/51 (62%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQ 605
I++G L ++++D+I FSEFG + + + DK + KGF F+ +E ++
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQR 83
Score = 41.9 bits (94), Expect = 8e-05
Identities = 17/56 (30%), Positives = 32/56 (57%)
Frame = +3
Query: 201 DDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPES 368
D +++G L ++ + ++ F +GE IN+ D TG+S+GFAF+ ++ S
Sbjct: 29 DSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRS 84
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 43.6 bits (98), Expect = 3e-05
Identities = 19/53 (35%), Positives = 32/53 (60%)
Frame = +3
Query: 198 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 356
D + +F+ LS++T + ++ F YG I I V + TG+S G+AF+VF+
Sbjct: 97 DPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFE 149
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 41.5 bits (93), Expect = 1e-04
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = +3
Query: 213 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 356
++VG L W T+D+ L D F G + + +P TGRS+GF + F+
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFE 328
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 40.7 bits (91), Expect = 2e-04
Identities = 21/79 (26%), Positives = 38/79 (48%)
Frame = +3
Query: 393 EHTINNXKVXPXKAKARHGKIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRK 572
E TI + + G ++VG L + ++ +FS+FG +L++ M ++ K
Sbjct: 87 EKTIKKKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSK 146
Query: 573 GFCFITFESEQXVNDLLKT 629
+ FI FES N + +T
Sbjct: 147 HYAFIEFESLDVANVVAET 165
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 40.3 bits (90), Expect = 2e-04
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Frame = +3
Query: 366 SIXKVMAAGEHTINNXK--VXPXKAKARHGKIFVGGLXXEISDDEIXNFFSEFGTILQVE 539
SI ++ A + I K + A + ++VG L ++++I FS+ G I ++
Sbjct: 3 SITRLDAVSPYLIRRFKNDLRALDAVKQSNCVYVGNLSFYTTEEQIYALFSKCGEIRRII 62
Query: 540 MPFDKTKNQRKGFCFITFESEQXVNDLLKTPKRT 641
M D+ GFCF+ + Q D LK RT
Sbjct: 63 MGVDRFTKTPCGFCFVEYFENQDALDSLKYISRT 96
Score = 31.5 bits (68), Expect = 0.11
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +3
Query: 213 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 353
++VG LS+ TT++++ F GEI I + D T GF F+ +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEY 80
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 39.9 bits (89), Expect = 3e-04
Identities = 18/75 (24%), Positives = 38/75 (50%)
Frame = +3
Query: 213 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMAAG 392
+FVG + ++ +++++ + F G + + + DP TG +G+ F F E+ A
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSET----TAMA 64
Query: 393 EHTINNXKVXPXKAK 437
+NN ++ P K +
Sbjct: 65 VRKLNNSELGPRKIR 79
Score = 31.5 bits (68), Expect = 0.11
Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFIT-FESEQXVNDLLKT 629
+FVG + ++S+ ++ F++ G + ++ D KG+ F F+SE + K
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 630 PKRTIG 647
+G
Sbjct: 69 NNSELG 74
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 39.1 bits (87), Expect = 5e-04
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRK----GFCFITFESEQXVND 617
++FVG L EI + F GT+ +V +PF + + + G F+TF +++ V+
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104
Query: 618 LLKT 629
++T
Sbjct: 105 AIET 108
Score = 35.1 bits (77), Expect = 0.009
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 9/102 (8%)
Frame = +3
Query: 159 DSQDHNSAE---APGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGR 326
D+ H SAE P + DD ++FVG LS T E+R F G + + +
Sbjct: 24 DAAVHASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRG 83
Query: 327 SR----GFAFIVFKAPESIXK-VMAAGEHTINNXKVXPXKAK 437
+R G AF+ F E + K + T+++ ++ KA+
Sbjct: 84 TRLVPSGIAFVTFNNQEDVDKAIETLNGKTLDDREIVVQKAR 125
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 38.7 bits (86), Expect = 7e-04
Identities = 23/55 (41%), Positives = 30/55 (54%)
Frame = +3
Query: 213 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXK 377
LFV L+ T D++L F +G+I S V D TG S +AFI F ES+ K
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEK 300
Score = 31.5 bits (68), Expect = 0.11
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXV 611
+FV L D+++ FS FG I+ ++ DK + FI F++++ V
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESV 298
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 38.3 bits (85), Expect = 0.001
Identities = 19/48 (39%), Positives = 31/48 (64%)
Frame = +3
Query: 213 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 356
LF+ LS++ T +E+ D FG YG + I + NT ++RG AF+V++
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRL---GNTVQTRGTAFVVYE 58
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 38.3 bits (85), Expect = 0.001
Identities = 16/55 (29%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Frame = +3
Query: 444 HGKIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITF-ESEQ 605
H ++FVG L +++D+ + FSE+ ++++ ++ D+ + + +GF F++F +S+Q
Sbjct: 29 HFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDR-EGKTRGFGFVSFKDSDQ 82
Score = 37.5 bits (83), Expect = 0.002
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXK 377
+LFVG L + D+ L F Y + V D G++RGF F+ FK + K
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRD-REGKTRGFGFVSFKDSDQFLK 85
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 35.5 bits (78), Expect = 0.007
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +3
Query: 159 DSQDHNSAEAPGRD-DDRKLFVGGLSWE--TTDKELRDHFGAYGEIXSINVKTDPNTGRS 329
DS +S P D L+V L T +L D F +G I S + PN+G S
Sbjct: 365 DSLRESSPSIPNSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGIS 424
Query: 330 RGFAFIVFKAPES 368
+G+ F+ F+ E+
Sbjct: 425 KGYGFVAFRQIEA 437
Score = 32.7 bits (71), Expect = 0.047
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +3
Query: 168 DHNSAEAPGR--DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSI 296
+++ PG+ D+ ++VG + +D+E+ HF YG++ SI
Sbjct: 2 NNSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESI 46
Score = 31.9 bits (69), Expect = 0.083
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 15/97 (15%)
Frame = +3
Query: 402 INNXKVX-PXKAKARHGKIFVGGLXXEISDDEIXNFFSEFGTILQV-------------E 539
+NN K+ P + + I+VG + +SD+EI FS++G + +
Sbjct: 1 MNNSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKA 60
Query: 540 MPFDKTKNQRKGFCFITFESEQXVNDLLKTPK-RTIG 647
PF KN + + F+ F + + + ++LK K T+G
Sbjct: 61 KPFKPPKNGVQ-YGFVKFVNAESIEEVLKDAKGMTLG 96
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 35.5 bits (78), Expect = 0.007
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFES 599
KI++ L + +D++ FG +L ++ + KGFCF F++
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKN 360
Score = 29.1 bits (62), Expect = 0.58
Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +3
Query: 198 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXK 377
D K+++ L + ++ + +G++ S + + G S+GF F FK P
Sbjct: 307 DSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEV 366
Query: 378 VMAA--GEHTINN 410
++ G+ T N
Sbjct: 367 AISGLDGKDTYGN 379
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 35.5 bits (78), Expect = 0.007
Identities = 13/50 (26%), Positives = 28/50 (56%)
Frame = +3
Query: 213 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAP 362
++VG + +E ++++ D F G + S + DP +G+ +G+ F + P
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDP 56
Score = 32.3 bits (70), Expect = 0.062
Identities = 10/47 (21%), Positives = 26/47 (55%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITF 593
++VG + E++++++ + F + G + ++ D Q KG+ F +
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEY 53
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 35.5 bits (78), Expect = 0.007
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDK 554
+FVGGL +S+ ++ F FG IL +++PF K
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGK 332
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 35.5 bits (78), Expect = 0.007
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +3
Query: 423 PXKAKARHGKIFVGGLXXEISDDEIXNFFSEFGTILQVEMP 545
P A + +FVGGL +S++E+ F FG I+ V++P
Sbjct: 295 PQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIP 335
Score = 33.9 bits (74), Expect = 0.020
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 213 LFVGGLSWETTDKELRDHFGA-YGEIXSINVKTDPNTGRSRGFAFIVF 353
+FVG LS + ++ F + Y S + TDP T SRG+ F+ F
Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRF 235
Score = 28.7 bits (61), Expect = 0.77
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +3
Query: 213 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTG 323
+FVGGLS +++EL+ F +GEI + VK P G
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEI--VYVKIPPGKG 339
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 35.1 bits (77), Expect = 0.009
Identities = 27/143 (18%), Positives = 57/143 (39%), Gaps = 8/143 (5%)
Frame = +3
Query: 195 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIX 374
R+ D +++G L + TD L + G + +I++ D GF F F + +
Sbjct: 7 RNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVE 66
Query: 375 KV-MAAGEHTINNXKVXPXKAKARHG-------KIFVGGLXXEISDDEIXNFFSEFGTIL 530
+ + + +A G +FVG L + + + + FS G ++
Sbjct: 67 YACQILNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLV 126
Query: 531 QVEMPFDKTKNQRKGFCFITFES 599
+ + KG+ F++++S
Sbjct: 127 KAPQVARDENGRSKGYGFVSYDS 149
Score = 34.3 bits (75), Expect = 0.015
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +3
Query: 213 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESI-XKVMAA 389
LFVG L ++ L D F A G++ GRS+G+ F+ + + E+ + A
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAM 160
Query: 390 GEHTINNXKVXPXKAKARHGK 452
+ N + A R GK
Sbjct: 161 NNQFLMNKPITVSYAFKREGK 181
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 33.1 bits (72), Expect = 0.036
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = +3
Query: 429 KAKARHGKIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQ 605
++ +R +++ GL SD+ + + + FG + + D N KG+ F FE E+
Sbjct: 290 ESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEK 348
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 33.1 bits (72), Expect = 0.036
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +3
Query: 204 DRKLFVGGLSWETTDKELRDHFGAYGEIXSINV--KTDPNTGRSRGFAFIVFKAPE 365
+++++VGGLS +L F +G + ++ + K+ P G + FA++ F+ E
Sbjct: 4 EKRIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTP-VGTIQRFAYLNFRTDE 58
Score = 30.7 bits (66), Expect = 0.19
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTK-NQRKGFCFITFESEQ 605
+I+VGGL I ++ + FS FG++ +E+ T + F ++ F +++
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDE 58
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 32.3 bits (70), Expect = 0.062
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITF 593
I V L ++ + I F +G I + MP K KG+C+I +
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEY 147
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 31.9 bits (69), Expect = 0.083
Identities = 11/47 (23%), Positives = 26/47 (55%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITF 593
I V G+ E +++++ + F++FG + + + D+ KG+ I +
Sbjct: 12 IIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEY 58
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 31.9 bits (69), Expect = 0.083
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +3
Query: 201 DDRKLFVGGLSWETTDKELRDHF-GAYGEIXSINVKTDPNTGRSRGFAFIVFKAP 362
++ K+ V L + T+ ++++ F + G +++ PN GRS+G A I+F P
Sbjct: 53 EESKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPN-GRSKGIATIIFSRP 106
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 30.3 bits (65), Expect = 0.25
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 249 KELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAP 362
++L + F +G I S + + P+T S+G+ F+ F P
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHP 472
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 29.9 bits (64), Expect = 0.33
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 207 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPN 317
R +F+G L +KE+ + FG +G+I I + + N
Sbjct: 299 RNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKN 335
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 29.5 bits (63), Expect = 0.44
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +3
Query: 459 VGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKTPKR 638
V L ++ + ++ + F F I +V M +D+ + +G C + FE+ Q D KT +
Sbjct: 89 VENLHYQVLEKDVLSLFENFHPI-RVIMNYDRA-GRSEGSCDVYFETSQDAEDAQKTLQS 146
Query: 639 T 641
T
Sbjct: 147 T 147
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 27.9 bits (59), Expect = 1.3
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +3
Query: 483 SDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKTPK 635
+++ I +FFS+FG + +VE+ N C + F S + N+ +P+
Sbjct: 255 NEENIRSFFSKFGVLEKVEL------NPTHHSCVLEFTSHEAANNAWSSPE 299
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 27.5 bits (58), Expect = 1.8
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Frame = +3
Query: 183 EAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAP 362
E P LF+ G+ E D ++R HF YG + S+ + R++ AF+ FK
Sbjct: 204 EPPKDKKIASLFLIGVEDELADYKIRKHFEQYGPLKSVVC-----SHRAK-CAFVNFKTR 257
Query: 363 ESIXKVMAAGEHTINNXKVXPXKAKARHGK-IFVGGLXXEISDDEI 497
S +AA N + + K + GK +GG E+ + ++
Sbjct: 258 SSAE--IAAAASPDGNVVIEGFRLKVQWGKPRSLGGPEGEVRNAKL 301
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +3
Query: 477 EISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFES 599
+++D + + +S FGT+ V + D +K ++ + I FE+
Sbjct: 178 QVNDAYLRSIYSSFGTLQNVVIQKDISKEKKYVYSIIVFET 218
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 207 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPN 317
R +F+G L T+ E+R+ +G I I + T+ N
Sbjct: 206 RNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERN 242
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEM 542
+F+G L I++DEI FG I Q+++
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKI 237
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +3
Query: 174 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPN 317
N A A R +++G T + L++ F +GEI +N + N
Sbjct: 403 NIALAVAGGASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKN 450
>SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 289
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 220 TKSFLSSSRPGASALL*SCESPPPFSAFPLSWLSVVIS 107
T SFL + R +L C S P +AF W+ ++ S
Sbjct: 205 TSSFLETQRSYRIYMLIDCPSNPKATAFARYWMHLICS 242
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 330 RGFAFIVFKAPESIXKVMAAGEHTINNXK 416
RGFA IVF A S +V G H +N+ K
Sbjct: 187 RGFAEIVFCAIASNEQVRGYGSHLMNHLK 215
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 204 DRKLFVGGLSWETTDKELRDHFGAYGEI 287
+ +LFVG + + T +++ D F YG+I
Sbjct: 3 ETRLFVGRIPPQATREDMMDFFKGYGQI 30
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/58 (22%), Positives = 29/58 (50%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLL 623
++FVG + + + +++ +FF +G IL ++ GF F+ E + D++
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKL--------MNGFGFVEVEDARDARDIV 54
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/54 (22%), Positives = 24/54 (44%)
Frame = +3
Query: 417 VXPXKAKARHGKIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGF 578
+ P K +F+GG+ + + + + F FG++ + + N R GF
Sbjct: 396 IPPDSIKVYSRTLFLGGITRSVREPVLRSMFERFGSVQSLIL----NHNYRHGF 445
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,584,043
Number of Sequences: 5004
Number of extensions: 49441
Number of successful extensions: 185
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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