Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_K05
(652 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 105 2e-23
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 103 1e-22
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 102 2e-22
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 102 2e-22
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 102 2e-22
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 102 2e-22
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 102 2e-22
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 101 3e-22
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 101 3e-22
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 100 2e-21
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 100 2e-21
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 98 5e-21
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 98 5e-21
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 91 4e-19
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 86 2e-17
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 61 5e-16
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 73 1e-13
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 70 1e-12
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 69 2e-12
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 69 2e-12
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 69 2e-12
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 69 2e-12
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 67 1e-11
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 67 1e-11
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 65 3e-11
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 65 3e-11
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 62 2e-10
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 62 2e-10
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 62 2e-10
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 62 3e-10
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 62 3e-10
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 62 3e-10
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 62 4e-10
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 61 5e-10
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 61 7e-10
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 60 9e-10
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 60 9e-10
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 60 9e-10
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 60 1e-09
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 60 1e-09
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 60 1e-09
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 60 2e-09
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 59 2e-09
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 58 4e-09
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 58 4e-09
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 58 4e-09
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 58 5e-09
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 58 5e-09
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 58 7e-09
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 58 7e-09
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 58 7e-09
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 57 9e-09
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 57 9e-09
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 57 9e-09
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 56 2e-08
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 56 2e-08
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 56 2e-08
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 56 2e-08
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 56 2e-08
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 56 2e-08
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 56 2e-08
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 56 3e-08
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 56 3e-08
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 56 3e-08
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 55 5e-08
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 55 5e-08
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 55 5e-08
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 55 5e-08
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 55 5e-08
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 55 5e-08
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 54 6e-08
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 54 6e-08
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 54 8e-08
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 54 8e-08
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 54 8e-08
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 54 8e-08
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 54 1e-07
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 54 1e-07
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 54 1e-07
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 54 1e-07
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 53 1e-07
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 53 2e-07
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 52 3e-07
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 52 4e-07
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 52 4e-07
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 51 6e-07
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 51 6e-07
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 50 1e-06
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 50 1e-06
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 50 1e-06
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 50 2e-06
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 50 2e-06
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 49 2e-06
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 49 2e-06
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 49 3e-06
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 49 3e-06
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 48 4e-06
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 48 4e-06
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 48 5e-06
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 48 5e-06
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 48 5e-06
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 47 9e-06
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 47 9e-06
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 47 1e-05
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 46 2e-05
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 46 2e-05
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 46 3e-05
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 46 3e-05
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 46 3e-05
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 46 3e-05
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 45 4e-05
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 45 4e-05
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 45 4e-05
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 45 4e-05
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 45 5e-05
At2g47310.1 68415.m05906 flowering time control protein-related ... 44 7e-05
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 44 7e-05
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 44 7e-05
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 44 7e-05
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 44 7e-05
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 44 9e-05
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 44 9e-05
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 44 9e-05
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 44 9e-05
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 44 9e-05
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 44 1e-04
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 43 2e-04
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 43 2e-04
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 43 2e-04
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 43 2e-04
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 43 2e-04
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 42 3e-04
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 42 3e-04
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 42 4e-04
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 42 4e-04
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 42 4e-04
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 42 4e-04
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 42 4e-04
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 42 4e-04
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 42 5e-04
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 42 5e-04
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 41 6e-04
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 41 8e-04
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 41 8e-04
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 41 8e-04
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 41 8e-04
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 40 0.001
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 40 0.001
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 40 0.001
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 40 0.001
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 40 0.002
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 40 0.002
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 40 0.002
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 40 0.002
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 39 0.003
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 39 0.003
At5g51300.2 68418.m06360 splicing factor-related contains simila... 39 0.003
At5g51300.1 68418.m06359 splicing factor-related contains simila... 39 0.003
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 39 0.003
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 39 0.003
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 39 0.003
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 39 0.003
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 38 0.006
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 38 0.008
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 38 0.008
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 38 0.008
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 37 0.010
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 37 0.010
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 37 0.010
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 37 0.013
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 37 0.013
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 37 0.013
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 37 0.013
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 36 0.018
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 36 0.023
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 36 0.031
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 36 0.031
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 35 0.041
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 35 0.041
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 35 0.041
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 35 0.041
At1g72800.1 68414.m08416 nuM1-related contains similarity with n... 35 0.041
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 35 0.054
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 35 0.054
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 35 0.054
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 34 0.071
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 34 0.094
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 34 0.094
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 33 0.12
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 33 0.12
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 33 0.12
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 33 0.16
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 33 0.16
At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing ... 33 0.22
At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ... 33 0.22
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 32 0.38
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 32 0.38
At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing ... 32 0.38
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 32 0.38
At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein ... 31 0.66
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 31 0.66
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 31 0.66
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 31 0.66
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 31 0.66
At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing ... 30 1.2
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 30 1.2
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 30 1.2
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 30 1.2
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar... 30 1.5
At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing ... 29 2.0
At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein ... 29 2.0
At3g18810.1 68416.m02389 protein kinase family protein contains ... 29 2.0
At1g73490.1 68414.m08508 RNA recognition motif (RRM)-containing ... 29 2.0
At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) famil... 29 2.0
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 29 2.7
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 29 2.7
At2g47390.1 68415.m05915 expressed protein 29 2.7
At2g42240.1 68415.m05228 RNA recognition motif (RRM)-containing ... 29 2.7
At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) famil... 29 3.5
At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70 (... 29 3.5
At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) famil... 29 3.5
At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) famil... 29 3.5
At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing ... 28 4.7
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 28 4.7
At5g22830.1 68418.m02669 magnesium transporter CorA-like family ... 28 6.2
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 28 6.2
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 28 6.2
At2g33440.1 68415.m04099 splicing factor family protein similar ... 28 6.2
At1g79100.1 68414.m09223 arginine/serine-rich protein-related si... 27 8.2
At1g12290.1 68414.m01421 disease resistance protein (CC-NBS-LRR ... 27 8.2
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 105 bits (253), Expect = 2e-23
Identities = 64/191 (33%), Positives = 102/191 (53%), Gaps = 17/191 (8%)
Frame = +3
Query: 114 TTDNQLNGNA--ENGG---GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAY 278
T D++ NG A + GG S DH + + KLFVGG+SWETT + ++FG +
Sbjct: 31 TFDDRRNGGAAVDTGGIQMKHSVDHRHSSS-SMSSPGKLFVGGVSWETTAETFANYFGKF 89
Query: 279 GEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMAAGEHTINNXKV------------X 422
GE+ + TD TG RGF F+ F A ++ + + +H I++ KV
Sbjct: 90 GEVVDSVIMTDRITGNPRGFGFVTF-ADSAVAEKVLEEDHVIDDRKVDLKRTLPRGDKDT 148
Query: 423 PXKAKARHGKIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESE 602
KA ++ KIFVGGL + +DE+ N+F +G I++ ++ +D + +GF F+TF++E
Sbjct: 149 DIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTE 208
Query: 603 QXVNDLLKTPK 635
V+ L K
Sbjct: 209 DSVDRLFSDGK 219
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 103 bits (246), Expect = 1e-22
Identities = 58/175 (33%), Positives = 91/175 (52%), Gaps = 25/175 (14%)
Frame = +3
Query: 201 DDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKV 380
D KLFVGG+SWET + +LR+HF YGE+ V D TGR RGF F++F P + +V
Sbjct: 4 DQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRV 63
Query: 381 MAAGEHTINNXKVXPXKAKARH-------------------------GKIFVGGLXXEIS 485
+ +H+I+ +V +A +R KIFVGGL ++
Sbjct: 64 LQE-KHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLT 122
Query: 486 DDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKTPKRTIGG 650
D+E +F +G + V + +D+ N+ +GF F++F+SE V+ +L + G
Sbjct: 123 DEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSG 177
Score = 58.8 bits (136), Expect = 3e-09
Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Frame = +3
Query: 105 QDITTDNQLNGNAENGGGDSQDHNSAEAPGRD---DDRKLFVGGLSWETTDKELRDHFGA 275
+++ ++ + G + + N++ + G D +K+FVGGL TD+E R +F
Sbjct: 73 REVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEV 132
Query: 276 YGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMAAGEHTINNXKVXPXKAKARHGKI 455
YG + + + D T R RGF F+ F + +++ V+ H ++ +V +A +
Sbjct: 133 YGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKDANP 192
Query: 456 FVGG 467
GG
Sbjct: 193 GGGG 196
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 102 bits (245), Expect = 2e-22
Identities = 58/168 (34%), Positives = 92/168 (54%), Gaps = 11/168 (6%)
Frame = +3
Query: 153 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSR 332
G S++ N G K+F+GGL +TT+ HFG YGEI + D +TG+ R
Sbjct: 2 GSRSRNDNFQSGDGASPG-KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPR 60
Query: 333 GFAFIVFKAPESIXKVMAAGEHTINNXKVXPXKA--KARHG---------KIFVGGLXXE 479
GF FI F P + KV+ H IN +V + K G KIFVGG+
Sbjct: 61 GFGFITFADPSVVDKVI-EDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPST 119
Query: 480 ISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLL 623
+++DE+ +FF+++G +++ ++ D N+ +GF F+ F+SE+ V++LL
Sbjct: 120 VTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELL 167
Score = 58.0 bits (134), Expect = 5e-09
Identities = 24/62 (38%), Positives = 38/62 (61%)
Frame = +3
Query: 207 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMA 386
+K+FVGG+ T+ EL+D F YG + V D T RSRGF F++F + E + ++++
Sbjct: 109 KKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLS 168
Query: 387 AG 392
G
Sbjct: 169 KG 170
Score = 41.1 bits (92), Expect = 6e-04
Identities = 20/63 (31%), Positives = 33/63 (52%)
Frame = +3
Query: 438 ARHGKIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVND 617
A GKIF+GGL + ++ F ++G I + D+ Q +GF FITF V+
Sbjct: 16 ASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDK 75
Query: 618 LLK 626
+++
Sbjct: 76 VIE 78
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 102 bits (245), Expect = 2e-22
Identities = 58/168 (34%), Positives = 92/168 (54%), Gaps = 11/168 (6%)
Frame = +3
Query: 153 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSR 332
G S++ N G K+F+GGL +TT+ HFG YGEI + D +TG+ R
Sbjct: 2 GSRSRNDNFQSGDGASPG-KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPR 60
Query: 333 GFAFIVFKAPESIXKVMAAGEHTINNXKVXPXKA--KARHG---------KIFVGGLXXE 479
GF FI F P + KV+ H IN +V + K G KIFVGG+
Sbjct: 61 GFGFITFADPSVVDKVI-EDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPST 119
Query: 480 ISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLL 623
+++DE+ +FF+++G +++ ++ D N+ +GF F+ F+SE+ V++LL
Sbjct: 120 VTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELL 167
Score = 58.0 bits (134), Expect = 5e-09
Identities = 24/62 (38%), Positives = 38/62 (61%)
Frame = +3
Query: 207 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMA 386
+K+FVGG+ T+ EL+D F YG + V D T RSRGF F++F + E + ++++
Sbjct: 109 KKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLS 168
Query: 387 AG 392
G
Sbjct: 169 KG 170
Score = 41.1 bits (92), Expect = 6e-04
Identities = 20/63 (31%), Positives = 33/63 (52%)
Frame = +3
Query: 438 ARHGKIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVND 617
A GKIF+GGL + ++ F ++G I + D+ Q +GF FITF V+
Sbjct: 16 ASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDK 75
Query: 618 LLK 626
+++
Sbjct: 76 VIE 78
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 102 bits (244), Expect = 2e-22
Identities = 61/172 (35%), Positives = 90/172 (52%), Gaps = 25/172 (14%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMAA 389
KLF+GG+SW+T ++ LRD+F YG++ + D TGR+RGF FIVF P + + +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP-CVSERVIM 65
Query: 390 GEHTINNXKVXPXKAKAR-------------------HG------KIFVGGLXXEISDDE 494
+H I+ V KA R HG KIFVGGL I+++E
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 495 IXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKTPKRTIGG 650
N+F +FGTI V + +D + +GF FITF+S+ V+ +L + G
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNG 177
Score = 58.8 bits (136), Expect = 3e-09
Identities = 27/76 (35%), Positives = 44/76 (57%)
Frame = +3
Query: 207 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMA 386
+K+FVGGL T++E +++F +G I + V D NT R RGF FI F + +++ +V+
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLH 169
Query: 387 AGEHTINNXKVXPXKA 434
H +N V +A
Sbjct: 170 KTFHELNGKLVEVKRA 185
Score = 44.4 bits (100), Expect = 7e-05
Identities = 18/68 (26%), Positives = 40/68 (58%)
Frame = +3
Query: 447 GKIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLK 626
GK+F+GG+ + ++ + ++FS +G +++ + D+ + +GF FI F ++ V++ +
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF-ADPCVSERVI 64
Query: 627 TPKRTIGG 650
K I G
Sbjct: 65 MDKHIIDG 72
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 102 bits (244), Expect = 2e-22
Identities = 61/172 (35%), Positives = 90/172 (52%), Gaps = 25/172 (14%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMAA 389
KLF+GG+SW+T ++ LRD+F YG++ + D TGR+RGF FIVF P + + +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP-CVSERVIM 65
Query: 390 GEHTINNXKVXPXKAKAR-------------------HG------KIFVGGLXXEISDDE 494
+H I+ V KA R HG KIFVGGL I+++E
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 495 IXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKTPKRTIGG 650
N+F +FGTI V + +D + +GF FITF+S+ V+ +L + G
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNG 177
Score = 58.8 bits (136), Expect = 3e-09
Identities = 27/76 (35%), Positives = 44/76 (57%)
Frame = +3
Query: 207 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMA 386
+K+FVGGL T++E +++F +G I + V D NT R RGF FI F + +++ +V+
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLH 169
Query: 387 AGEHTINNXKVXPXKA 434
H +N V +A
Sbjct: 170 KTFHELNGKLVEVKRA 185
Score = 44.4 bits (100), Expect = 7e-05
Identities = 18/68 (26%), Positives = 40/68 (58%)
Frame = +3
Query: 447 GKIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLK 626
GK+F+GG+ + ++ + ++FS +G +++ + D+ + +GF FI F ++ V++ +
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF-ADPCVSERVI 64
Query: 627 TPKRTIGG 650
K I G
Sbjct: 65 MDKHIIDG 72
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 102 bits (244), Expect = 2e-22
Identities = 61/172 (35%), Positives = 90/172 (52%), Gaps = 25/172 (14%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMAA 389
KLF+GG+SW+T ++ LRD+F YG++ + D TGR+RGF FIVF P + + +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP-CVSERVIM 65
Query: 390 GEHTINNXKVXPXKAKAR-------------------HG------KIFVGGLXXEISDDE 494
+H I+ V KA R HG KIFVGGL I+++E
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 495 IXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKTPKRTIGG 650
N+F +FGTI V + +D + +GF FITF+S+ V+ +L + G
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNG 177
Score = 58.8 bits (136), Expect = 3e-09
Identities = 27/76 (35%), Positives = 44/76 (57%)
Frame = +3
Query: 207 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMA 386
+K+FVGGL T++E +++F +G I + V D NT R RGF FI F + +++ +V+
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLH 169
Query: 387 AGEHTINNXKVXPXKA 434
H +N V +A
Sbjct: 170 KTFHELNGKLVEVKRA 185
Score = 44.4 bits (100), Expect = 7e-05
Identities = 18/68 (26%), Positives = 40/68 (58%)
Frame = +3
Query: 447 GKIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLK 626
GK+F+GG+ + ++ + ++FS +G +++ + D+ + +GF FI F ++ V++ +
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF-ADPCVSERVI 64
Query: 627 TPKRTIGG 650
K I G
Sbjct: 65 MDKHIIDG 72
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 101 bits (243), Expect = 3e-22
Identities = 63/187 (33%), Positives = 92/187 (49%), Gaps = 9/187 (4%)
Frame = +3
Query: 105 QDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGE 284
+D D + + + E+ SQ H+ G D K+FVGGL+ ETT E HFG YGE
Sbjct: 11 EDEIHDPKPSEDIEDDDDKSQPHSGG---GVDSAGKIFVGGLARETTSAEFLKHFGKYGE 67
Query: 285 IXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMAAGEHTINNXKVXPXKAKARHG----- 449
I + D TG+ RGF F+ + A S+ + H I +V + R
Sbjct: 68 ITDSVIMKDRKTGQPRGFGFVTY-ADSSVVDKVIQDNHIIIGKQVEIKRTIPRGSMSSND 126
Query: 450 ----KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVND 617
KIFVGG+ + DDE FF +FG + + ++ D + + +GF F+T+ESE V+
Sbjct: 127 FKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDH 186
Query: 618 LLKTPKR 638
LL R
Sbjct: 187 LLAKGNR 193
Score = 44.4 bits (100), Expect = 7e-05
Identities = 22/67 (32%), Positives = 34/67 (50%)
Frame = +3
Query: 447 GKIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLK 626
GKIFVGGL E + E F ++G I + D+ Q +GF F+T+ V+ +++
Sbjct: 42 GKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ 101
Query: 627 TPKRTIG 647
IG
Sbjct: 102 DNHIIIG 108
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 101 bits (243), Expect = 3e-22
Identities = 62/175 (35%), Positives = 92/175 (52%), Gaps = 28/175 (16%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMAA 389
KLF+GG+SW+T ++ L+++FG YG++ + D TGR+RGF FIVF P S+ + +
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADP-SVAERVIM 74
Query: 390 GEHTINNXKVXPXKAKAR-------------------HG---------KIFVGGLXXEIS 485
+H I+ V KA R HG KIFVGGL I+
Sbjct: 75 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSIT 134
Query: 486 DDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKTPKRTIGG 650
+ E N+F +FGTI V + +D + +GF FITF+SE+ V+ +L + G
Sbjct: 135 EAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNG 189
Score = 59.7 bits (138), Expect = 2e-09
Identities = 29/76 (38%), Positives = 42/76 (55%)
Frame = +3
Query: 207 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMA 386
+K+FVGGL T+ E +++F +G I + V D NT R RGF FI F + ES+ V+
Sbjct: 122 KKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLH 181
Query: 387 AGEHTINNXKVXPXKA 434
H +N V +A
Sbjct: 182 KTFHELNGKMVEVKRA 197
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/68 (26%), Positives = 39/68 (57%)
Frame = +3
Query: 447 GKIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLK 626
GK+F+GG+ + ++ + +F ++G +++ + D+T + +GF FI F ++ V + +
Sbjct: 15 GKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVF-ADPSVAERVI 73
Query: 627 TPKRTIGG 650
K I G
Sbjct: 74 MDKHIIDG 81
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 99.5 bits (237), Expect = 2e-21
Identities = 55/169 (32%), Positives = 91/169 (53%), Gaps = 24/169 (14%)
Frame = +3
Query: 195 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIX 374
+ D+ KLF+GG+SW+T ++ L+++F ++GE+ + D TGR+RGF F+VF P ++
Sbjct: 2 QSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVA 60
Query: 375 KVMAAGEHTINNXKVXPXKA-----------------------KARHGKIFVGGLXXEIS 485
+++ +H I+ V KA R KIFVGGL ++
Sbjct: 61 EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVT 120
Query: 486 DDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVND-LLKT 629
+ + +F +FGT V + +D + +GF FIT++SE+ V LLKT
Sbjct: 121 ESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKT 169
Score = 62.9 bits (146), Expect = 2e-10
Identities = 34/99 (34%), Positives = 48/99 (48%)
Frame = +3
Query: 138 NAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPN 317
N N S S PGR RK+FVGGL T+ + + +F +G + V D N
Sbjct: 87 NMVNRSNSSSIQGSPGGPGRT--RKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHN 144
Query: 318 TGRSRGFAFIVFKAPESIXKVMAAGEHTINNXKVXPXKA 434
T R RGF FI + + E++ KV+ H +N V +A
Sbjct: 145 TQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRA 183
Score = 50.8 bits (116), Expect = 8e-07
Identities = 20/69 (28%), Positives = 43/69 (62%)
Frame = +3
Query: 444 HGKIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLL 623
+GK+F+GG+ + +++ + +FS FG +++ + D+T + +GF F+ F ++ V +++
Sbjct: 5 NGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVF-ADPAVAEIV 63
Query: 624 KTPKRTIGG 650
T K I G
Sbjct: 64 ITEKHNIDG 72
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 99.5 bits (237), Expect = 2e-21
Identities = 55/169 (32%), Positives = 91/169 (53%), Gaps = 24/169 (14%)
Frame = +3
Query: 195 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIX 374
+ D+ KLF+GG+SW+T ++ L+++F ++GE+ + D TGR+RGF F+VF P ++
Sbjct: 2 QSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVA 60
Query: 375 KVMAAGEHTINNXKVXPXKA-----------------------KARHGKIFVGGLXXEIS 485
+++ +H I+ V KA R KIFVGGL ++
Sbjct: 61 EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVT 120
Query: 486 DDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVND-LLKT 629
+ + +F +FGT V + +D + +GF FIT++SE+ V LLKT
Sbjct: 121 ESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKT 169
Score = 62.9 bits (146), Expect = 2e-10
Identities = 34/99 (34%), Positives = 48/99 (48%)
Frame = +3
Query: 138 NAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPN 317
N N S S PGR RK+FVGGL T+ + + +F +G + V D N
Sbjct: 87 NMVNRSNSSSIQGSPGGPGRT--RKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHN 144
Query: 318 TGRSRGFAFIVFKAPESIXKVMAAGEHTINNXKVXPXKA 434
T R RGF FI + + E++ KV+ H +N V +A
Sbjct: 145 TQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRA 183
Score = 50.8 bits (116), Expect = 8e-07
Identities = 20/69 (28%), Positives = 43/69 (62%)
Frame = +3
Query: 444 HGKIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLL 623
+GK+F+GG+ + +++ + +FS FG +++ + D+T + +GF F+ F ++ V +++
Sbjct: 5 NGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVF-ADPAVAEIV 63
Query: 624 KTPKRTIGG 650
T K I G
Sbjct: 64 ITEKHNIDG 72
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 97.9 bits (233), Expect = 5e-21
Identities = 56/168 (33%), Positives = 89/168 (52%), Gaps = 21/168 (12%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMAA 389
KLF+GG+SWET++ LRD+F ++GE+ + D TGR+RGF F+VF P +V+
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 390 GEHTINNXKVXPXKAKARHG---------------------KIFVGGLXXEISDDEIXNF 506
+H I+ V KA R KIFVGGL +++ E +
Sbjct: 67 -KHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKY 125
Query: 507 FSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKTPKRTIGG 650
F++FG I V + +D + +GF FI+++SE+ V+ +L+ + G
Sbjct: 126 FAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNG 173
Score = 61.7 bits (143), Expect = 4e-10
Identities = 28/78 (35%), Positives = 44/78 (56%)
Frame = +3
Query: 186 APGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPE 365
+PG + +K+FVGGL+ T+ E + +F +G I + V D T R RGF FI + + E
Sbjct: 99 SPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEE 158
Query: 366 SIXKVMAAGEHTINNXKV 419
++ KV+ H +N V
Sbjct: 159 AVDKVLQKTFHELNGKMV 176
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 97.9 bits (233), Expect = 5e-21
Identities = 56/168 (33%), Positives = 89/168 (52%), Gaps = 21/168 (12%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMAA 389
KLF+GG+SWET++ LRD+F ++GE+ + D TGR+RGF F+VF P +V+
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 390 GEHTINNXKVXPXKAKARHG---------------------KIFVGGLXXEISDDEIXNF 506
+H I+ V KA R KIFVGGL +++ E +
Sbjct: 67 -KHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKY 125
Query: 507 FSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKTPKRTIGG 650
F++FG I V + +D + +GF FI+++SE+ V+ +L+ + G
Sbjct: 126 FAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNG 173
Score = 61.7 bits (143), Expect = 4e-10
Identities = 28/78 (35%), Positives = 44/78 (56%)
Frame = +3
Query: 186 APGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPE 365
+PG + +K+FVGGL+ T+ E + +F +G I + V D T R RGF FI + + E
Sbjct: 99 SPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEE 158
Query: 366 SIXKVMAAGEHTINNXKV 419
++ KV+ H +N V
Sbjct: 159 AVDKVLQKTFHELNGKMV 176
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 91.5 bits (217), Expect = 4e-19
Identities = 53/174 (30%), Positives = 82/174 (47%), Gaps = 24/174 (13%)
Frame = +3
Query: 201 DDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKV 380
D KLF+GG+SW+T + LR++F +GE+ + V + TGR RGF F+ F P I +V
Sbjct: 4 DQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRV 63
Query: 381 MAAGEH------------------------TINNXKVXPXKAKARHGKIFVGGLXXEISD 488
+ H T N + A R KIFVGGL ++
Sbjct: 64 LQDKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTS 123
Query: 489 DEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKTPKRTIGG 650
DE +F +G + + D+T + +GF F++F+SE V+ +L + G
Sbjct: 124 DEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNG 177
Score = 53.6 bits (123), Expect = 1e-07
Identities = 26/76 (34%), Positives = 39/76 (51%)
Frame = +3
Query: 207 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMA 386
+K+FVGGL T E R +F YG + + D T R RGF F+ F + +S+ V+
Sbjct: 110 KKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLH 169
Query: 387 AGEHTINNXKVXPXKA 434
H +N +V +A
Sbjct: 170 KTFHDLNGKQVEVKRA 185
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 85.8 bits (203), Expect = 2e-17
Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 9/150 (6%)
Frame = +3
Query: 204 DRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVM 383
+RKL V G+ W+ L+D+ +G++ V D +TGRSRGF ++ F + E +
Sbjct: 2 ERKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL 61
Query: 384 AAGEHTINN----XKVXPXKAKARH-----GKIFVGGLXXEISDDEIXNFFSEFGTILQV 536
GEH + N KV K + R +IFV + +S+ + + F +G I +
Sbjct: 62 -KGEHFLGNRILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDL 120
Query: 537 EMPFDKTKNQRKGFCFITFESEQXVNDLLK 626
MP D Q +G FITF S V DL++
Sbjct: 121 YMPKDYNSKQHRGIGFITFSSADSVEDLME 150
Score = 48.8 bits (111), Expect = 3e-06
Identities = 27/83 (32%), Positives = 38/83 (45%)
Frame = +3
Query: 171 HNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIV 350
+ E R K+FVG L E + +LRD+FG +G I + DP RGF F+
Sbjct: 228 YGRGEPTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVT 287
Query: 351 FKAPESIXKVMAAGEHTINNXKV 419
F A + +A H I +V
Sbjct: 288 F-AENGVADRVARRSHEICGQEV 309
Score = 45.6 bits (103), Expect = 3e-05
Identities = 25/67 (37%), Positives = 36/67 (53%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKT 629
KIFVG L E S D++ ++F FG I +P D ++ +GF F+TF +E V D +
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTF-AENGVADRVAR 299
Query: 630 PKRTIGG 650
I G
Sbjct: 300 RSHEICG 306
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 60.9 bits (141), Expect = 7e-10
Identities = 27/81 (33%), Positives = 47/81 (58%)
Frame = +3
Query: 207 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMA 386
+K+FVGGLS TT++E + +F +G + V D T R RGF F+ + + +S+ VM
Sbjct: 120 KKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQ 179
Query: 387 AGEHTINNXKVXPXKAKARHG 449
+ H +++ +V +A + G
Sbjct: 180 SNFHELSDKRVEVKRAIPKEG 200
Score = 51.6 bits (118), Expect(2) = 5e-16
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Frame = +3
Query: 198 DDDR-KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIX 374
D DR KLFVGG++ ET+++ L+ +F YG + V + TG+ RGF F+ F +
Sbjct: 2 DYDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVV 61
Query: 375 KVMAAGEHTINNXKVXPXKAKARH 446
K + H I V KA +H
Sbjct: 62 KAL-RDTHFILGKPVDVRKAIRKH 84
Score = 50.0 bits (114), Expect(2) = 5e-16
Identities = 22/64 (34%), Positives = 38/64 (59%)
Frame = +3
Query: 438 ARHGKIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVND 617
+R KIFVGGL +++E ++F FG V + D N+ +GF F+T++SE V
Sbjct: 117 SRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEV 176
Query: 618 LLKT 629
++++
Sbjct: 177 VMQS 180
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/66 (28%), Positives = 37/66 (56%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKT 629
K+FVGG+ E S++ + +FS +G +L+ + +K + +GF F+ F ++ V L+
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD 66
Query: 630 PKRTIG 647
+G
Sbjct: 67 THFILG 72
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 73.3 bits (172), Expect = 1e-13
Identities = 48/167 (28%), Positives = 71/167 (42%), Gaps = 19/167 (11%)
Frame = +3
Query: 207 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMA 386
RK+FV GL W+T L D F YGEI D +G+S+G+ FI+FK+ +
Sbjct: 128 RKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALK 187
Query: 387 AGEHTINNXKVX------------PXKAKARH-------GKIFVGGLXXEISDDEIXNFF 509
+ I P A A+H KI+V + +I ++ FF
Sbjct: 188 QPQKKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFF 247
Query: 510 SEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKTPKRTIGG 650
S FG I + + DK + KGF + S + L+ P +T G
Sbjct: 248 SRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHKTFEG 294
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/76 (30%), Positives = 38/76 (50%)
Frame = +3
Query: 207 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMA 386
RK++V +S + ++L + F +GEI + D TGR +GFA V+++ ES K +
Sbjct: 227 RKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALE 286
Query: 387 AGEHTINNXKVXPXKA 434
T + KA
Sbjct: 287 EPHKTFEGHVLHCHKA 302
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 70.1 bits (164), Expect = 1e-12
Identities = 30/59 (50%), Positives = 39/59 (66%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMA 386
K+FVGGL+WET + LR HF YGEI V D NTGRS+G+ F+ F+ PE+ + A
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACA 83
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/67 (31%), Positives = 32/67 (47%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKT 629
K+FVGGL E + + F ++G IL+ + DK + KG+ F+TF +
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD 84
Query: 630 PKRTIGG 650
P I G
Sbjct: 85 PTPIIDG 91
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 69.3 bits (162), Expect = 2e-12
Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 25/173 (14%)
Frame = +3
Query: 207 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMA 386
RK+FV GL W+T + L + F YGEI D +G+S+G+ FI++K+ +
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALK 199
Query: 387 AGEHTINN------------------XKVXPXKAKARHG-------KIFVGGLXXEISDD 491
+ I + A A+H KI+V + E+
Sbjct: 200 QPQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQ 259
Query: 492 EIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKTPKRTIGG 650
++ FFS+FG I + + DK + KGFC ++S + L+ P +T G
Sbjct: 260 KLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEG 312
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/68 (33%), Positives = 36/68 (52%)
Frame = +3
Query: 444 HGKIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLL 623
H KIFV GL + + + F ++G I + FDK + KG+ FI ++S + L
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Query: 624 KTPKRTIG 647
K P++ IG
Sbjct: 199 KQPQKKIG 206
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/76 (27%), Positives = 35/76 (46%)
Frame = +3
Query: 207 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMA 386
+K++V + E ++L F +GEI + D TGR +GF V+K+ ES + +
Sbjct: 245 KKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALE 304
Query: 387 AGEHTINNXKVXPXKA 434
T + KA
Sbjct: 305 EPHKTFEGHILHCQKA 320
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 69.3 bits (162), Expect = 2e-12
Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 25/173 (14%)
Frame = +3
Query: 207 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMA 386
RK+FV GL W+T + L + F YGEI D +G+S+G+ FI++K+ +
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALK 199
Query: 387 AGEHTINN------------------XKVXPXKAKARHG-------KIFVGGLXXEISDD 491
+ I + A A+H KI+V + E+
Sbjct: 200 QPQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQ 259
Query: 492 EIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKTPKRTIGG 650
++ FFS+FG I + + DK + KGFC ++S + L+ P +T G
Sbjct: 260 KLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEG 312
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/68 (33%), Positives = 36/68 (52%)
Frame = +3
Query: 444 HGKIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLL 623
H KIFV GL + + + F ++G I + FDK + KG+ FI ++S + L
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Query: 624 KTPKRTIG 647
K P++ IG
Sbjct: 199 KQPQKKIG 206
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/76 (27%), Positives = 35/76 (46%)
Frame = +3
Query: 207 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMA 386
+K++V + E ++L F +GEI + D TGR +GF V+K+ ES + +
Sbjct: 245 KKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALE 304
Query: 387 AGEHTINNXKVXPXKA 434
T + KA
Sbjct: 305 EPHKTFEGHILHCQKA 320
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 69.3 bits (162), Expect = 2e-12
Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 25/173 (14%)
Frame = +3
Query: 207 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMA 386
RK+FV GL W+T + L + F YGEI D +G+S+G+ FI++K+ +
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALK 199
Query: 387 AGEHTINN------------------XKVXPXKAKARHG-------KIFVGGLXXEISDD 491
+ I + A A+H KI+V + E+
Sbjct: 200 QPQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQ 259
Query: 492 EIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKTPKRTIGG 650
++ FFS+FG I + + DK + KGFC ++S + L+ P +T G
Sbjct: 260 KLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEG 312
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/68 (33%), Positives = 36/68 (52%)
Frame = +3
Query: 444 HGKIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLL 623
H KIFV GL + + + F ++G I + FDK + KG+ FI ++S + L
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Query: 624 KTPKRTIG 647
K P++ IG
Sbjct: 199 KQPQKKIG 206
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/76 (27%), Positives = 35/76 (46%)
Frame = +3
Query: 207 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMA 386
+K++V + E ++L F +GEI + D TGR +GF V+K+ ES + +
Sbjct: 245 KKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALE 304
Query: 387 AGEHTINNXKVXPXKA 434
T + KA
Sbjct: 305 EPHKTFEGHILHCQKA 320
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 69.3 bits (162), Expect = 2e-12
Identities = 29/53 (54%), Positives = 38/53 (71%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPES 368
K+FVGGL+WET + LR HF YG+I V TD NTGRS+G+ F+ F+ PE+
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEA 77
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/67 (31%), Positives = 32/67 (47%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKT 629
K+FVGGL E + + F ++G IL+ + DK + KG+ F+TF +
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
Query: 630 PKRTIGG 650
P I G
Sbjct: 85 PTPIIDG 91
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 66.9 bits (156), Expect = 1e-11
Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 12/160 (7%)
Frame = +3
Query: 207 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMA 386
RKLF+ GL+ +TT + LR F +YG++ V D TG+S+G+ F+ F + +
Sbjct: 75 RKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALK 134
Query: 387 AGEHTINNX-KVXPXKAKARHG-----------KIFVGGLXXEISDDEIXNFFSEFGTIL 530
I+ V A G KI+V + ++ D + N F +G +
Sbjct: 135 EPSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVE 194
Query: 531 QVEMPFDKTKNQRKGFCFITFESEQXVNDLLKTPKRTIGG 650
+ + FDK + +GF +++ + L P + I G
Sbjct: 195 EGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDG 234
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 66.9 bits (156), Expect = 1e-11
Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 12/160 (7%)
Frame = +3
Query: 207 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMA 386
RKLF+ GL+ +TT + LR F +YG++ V D TG+S+G+ F+ F + +
Sbjct: 75 RKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALK 134
Query: 387 AGEHTINNX-KVXPXKAKARHG-----------KIFVGGLXXEISDDEIXNFFSEFGTIL 530
I+ V A G KI+V + ++ D + N F +G +
Sbjct: 135 EPSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVE 194
Query: 531 QVEMPFDKTKNQRKGFCFITFESEQXVNDLLKTPKRTIGG 650
+ + FDK + +GF +++ + L P + I G
Sbjct: 195 EGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDG 234
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 65.3 bits (152), Expect = 3e-11
Identities = 28/69 (40%), Positives = 43/69 (62%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMAA 389
K+FVGGL+WET E+R +F +GEI + TD NTG+S+G+ F+ F+ +S + +A
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 390 GEHTINNXK 416
I+ K
Sbjct: 78 PNPVIDGRK 86
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/67 (35%), Positives = 34/67 (50%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKT 629
K+FVGGL E DE+ +F +FG IL+ + DK + KG+ F+TF +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 630 PKRTIGG 650
P I G
Sbjct: 78 PNPVIDG 84
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 65.3 bits (152), Expect = 3e-11
Identities = 28/69 (40%), Positives = 43/69 (62%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMAA 389
K+FVGGL+WET E+R +F +GEI + TD NTG+S+G+ F+ F+ +S + +A
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 390 GEHTINNXK 416
I+ K
Sbjct: 78 PNPVIDGRK 86
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/67 (35%), Positives = 34/67 (50%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKT 629
K+FVGGL E DE+ +F +FG IL+ + DK + KG+ F+TF +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 630 PKRTIGG 650
P I G
Sbjct: 78 PNPVIDG 84
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 62.5 bits (145), Expect = 2e-10
Identities = 34/84 (40%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Frame = +3
Query: 123 NQLNGNAENGGGDSQDHNSAEAPG--RDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSI 296
N+L+G G S + G R KLFVGGLSW T D L+ F ++GE+
Sbjct: 5 NKLSGILRQGVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEA 64
Query: 297 NVKTDPNTGRSRGFAFIVFKAPES 368
V D TGRSRGF F+ F +S
Sbjct: 65 TVIADRETGRSRGFGFVSFSCEDS 88
Score = 44.0 bits (99), Expect = 9e-05
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLK 626
K+FVGGL D + F+ FG + + + D+ + +GF F++F E N+ +K
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 62.5 bits (145), Expect = 2e-10
Identities = 34/84 (40%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Frame = +3
Query: 123 NQLNGNAENGGGDSQDHNSAEAPG--RDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSI 296
N+L+G G S + G R KLFVGGLSW T D L+ F ++GE+
Sbjct: 5 NKLSGILRQGVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEA 64
Query: 297 NVKTDPNTGRSRGFAFIVFKAPES 368
V D TGRSRGF F+ F +S
Sbjct: 65 TVIADRETGRSRGFGFVSFSCEDS 88
Score = 44.0 bits (99), Expect = 9e-05
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLK 626
K+FVGGL D + F+ FG + + + D+ + +GF F++F E N+ +K
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 62.5 bits (145), Expect = 2e-10
Identities = 27/53 (50%), Positives = 36/53 (67%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPES 368
K+FVGGL+WET +R +F +GEI V TD NTGRS+G+ F+ FK E+
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEA 75
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/52 (38%), Positives = 31/52 (59%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQ 605
KIFVGGL E D + +F +FG I++ + DK + KG+ F+TF+ +
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAE 74
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 62.1 bits (144), Expect = 3e-10
Identities = 46/199 (23%), Positives = 88/199 (44%), Gaps = 25/199 (12%)
Frame = +3
Query: 102 AQDITTDNQLNGNAENG----GGDSQDHNS-------AEAPGRDDDRKLFVGGLSWETTD 248
+QD++ ++ G+A G G +S+ S AE P ++ KLFVG L+++
Sbjct: 104 SQDVSEGDESEGDASEGDVSEGDESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNS 163
Query: 249 KELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKA-PESIXKVMAAGEHTINNXKVXP 425
+ L F G + V + T +SRGF F+ + E+ V + +N +
Sbjct: 164 QALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTV 223
Query: 426 XKAKARHGK-------------IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQ 566
KA R + ++VG L ++ + + FSE G +++ + +D+ +
Sbjct: 224 NKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGR 283
Query: 567 RKGFCFITFESEQXVNDLL 623
+GF F+T +N+ +
Sbjct: 284 SRGFGFVTMSDVDELNEAI 302
Score = 45.2 bits (102), Expect = 4e-05
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMAA 389
+++VG L W+ + L F +G++ V D TGRSRGF F+ + + + ++A
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 62.1 bits (144), Expect = 3e-10
Identities = 27/64 (42%), Positives = 40/64 (62%)
Frame = +3
Query: 198 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXK 377
D + + F+GGL+W T+D+ LRD F YG + V D +GRSRGF FI F +++ +
Sbjct: 4 DPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDE 63
Query: 378 VMAA 389
+AA
Sbjct: 64 AIAA 67
Score = 42.7 bits (96), Expect = 2e-04
Identities = 16/58 (27%), Positives = 36/58 (62%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLL 623
+ F+GGL SD + + F ++G +++ ++ DK + +GF FITF+ ++ +++ +
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAI 65
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 62.1 bits (144), Expect = 3e-10
Identities = 27/69 (39%), Positives = 42/69 (60%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMAA 389
K+FVGGL+WET E+R +F +GEI + TD TG+S+G+ F+ F+ +S + +A
Sbjct: 18 KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVAD 77
Query: 390 GEHTINNXK 416
I+ K
Sbjct: 78 PNPVIDGRK 86
Score = 55.2 bits (127), Expect = 4e-08
Identities = 25/69 (36%), Positives = 35/69 (50%)
Frame = +3
Query: 444 HGKIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLL 623
H K+FVGGL E DE+ +F +FG IL+ + DK + KG+ F+TF +
Sbjct: 16 HTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAV 75
Query: 624 KTPKRTIGG 650
P I G
Sbjct: 76 ADPNPVIDG 84
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 61.7 bits (143), Expect = 4e-10
Identities = 28/78 (35%), Positives = 44/78 (56%)
Frame = +3
Query: 186 APGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPE 365
+PG + +K+FVGGL+ T+ E + +F +G I + V D T R RGF FI + + E
Sbjct: 26 SPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEE 85
Query: 366 SIXKVMAAGEHTINNXKV 419
++ KV+ H +N V
Sbjct: 86 AVDKVLQKTFHELNGKMV 103
Score = 53.2 bits (122), Expect = 1e-07
Identities = 23/67 (34%), Positives = 41/67 (61%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKT 629
KIFVGGL +++ E +F++FG I V + +D + +GF FI+++SE+ V+ +L+
Sbjct: 34 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 93
Query: 630 PKRTIGG 650
+ G
Sbjct: 94 TFHELNG 100
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 61.3 bits (142), Expect = 5e-10
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Frame = +3
Query: 183 EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKA 359
E+ RD R +FV G W+TT + L+ F +YGEI +V D +TGR +G+ F++FK
Sbjct: 399 ESADRDIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKT 458
Query: 360 PESIXKVMAAGEHTINNXKVXPXKAKARHGK 452
+ + + E + N V A + GK
Sbjct: 459 RKGAREALKRPEKRMYNRIVVCNLASEKPGK 489
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/62 (25%), Positives = 32/62 (51%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKTP 632
IFV G + + + + F +G I + + DK + KG+ F+ F++ + + LK P
Sbjct: 410 IFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRP 469
Query: 633 KR 638
++
Sbjct: 470 EK 471
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 60.9 bits (141), Expect = 7e-10
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Frame = +3
Query: 183 EAPGRDDD-RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKA 359
E+ RD R +FV GL W+TT + L+ F YGEI +V D +TGR++GF F++FK
Sbjct: 154 ESADRDSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKT 213
Query: 360 PESIXKVMAAGEHTINNXKV 419
+ + E + N V
Sbjct: 214 RKGARAALKNPEKRMYNRTV 233
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/62 (29%), Positives = 32/62 (51%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKTP 632
IFV GL + + + + F +G I + + DK + KGF F+ F++ + LK P
Sbjct: 165 IFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNP 224
Query: 633 KR 638
++
Sbjct: 225 EK 226
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 60.5 bits (140), Expect = 9e-10
Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK---APESIXKV 380
KLF+GGLSW T D LRD F +G++ V D TGRSRGF F+ F A +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 381 MAAGEHTINNXKVXPXKAKARHGKIFVGG 467
M E + +V P + + + GG
Sbjct: 96 MDGKELNGRHIRVNPANDRPSAPRAYGGG 124
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESE 602
K+F+GGL D + + F+ FG ++ ++ D+ + +GF F+ F E
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDE 86
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 60.5 bits (140), Expect = 9e-10
Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK---APESIXKV 380
KLF+GGLSW T D LRD F +G++ V D TGRSRGF F+ F A +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 381 MAAGEHTINNXKVXPXKAKARHGKIFVGG 467
M E + +V P + + + GG
Sbjct: 96 MDGKELNGRHIRVNPANDRPSAPRAYGGG 124
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESE 602
K+F+GGL D + + F+ FG ++ ++ D+ + +GF F+ F E
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDE 86
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 60.5 bits (140), Expect = 9e-10
Identities = 28/78 (35%), Positives = 41/78 (52%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMAA 389
K+FVGG+S+ T + LR+ F YGE+ + D TGRSRGFAF+ F + E M
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQL 94
Query: 390 GEHTINNXKVXPXKAKAR 443
++ ++ A R
Sbjct: 95 DGQDLHGRRIRVNYATER 112
Score = 42.7 bits (96), Expect = 2e-04
Identities = 17/67 (25%), Positives = 37/67 (55%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKT 629
KIFVGG+ + + FS++G ++ ++ D+ + +GF F+TF S + ++ ++
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQL 94
Query: 630 PKRTIGG 650
+ + G
Sbjct: 95 DGQDLHG 101
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 60.1 bits (139), Expect = 1e-09
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMAA 389
++F+GGL + +++LRD GEI + + D ++G S+G+AF+ FK + K +
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 176
Query: 390 GEHTINNXKVXPXKAKARHGKIFVGGLXXEISDDEIXNFFSEFGT-ILQVEMPFDKTKNQ 566
K ++F+G + ++DE + G + +E+ D T
Sbjct: 177 LHSKEFKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTT 236
Query: 567 R-KGFCFITF 593
R +GF F+ +
Sbjct: 237 RNRGFAFVLY 246
Score = 42.7 bits (96), Expect = 2e-04
Identities = 15/54 (27%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = +3
Query: 444 HG-KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESE 602
HG ++F+GGL ++ ++++ + E G I +V + D+ KG+ F+ F+++
Sbjct: 114 HGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTK 167
Score = 31.9 bits (69), Expect = 0.38
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 1/110 (0%)
Frame = +3
Query: 111 ITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIX 290
I ++ +L GNA + + + L+V + T+ ++L++ F +GE+
Sbjct: 260 IDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVT 319
Query: 291 SINVKTDPNTGRSRGFAFIVFKAPESIXKVMAAGE-HTINNXKVXPXKAK 437
I T P G R F F+ + S K + E + +N + AK
Sbjct: 320 KI--VTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAK 367
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 60.1 bits (139), Expect = 1e-09
Identities = 26/56 (46%), Positives = 38/56 (67%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXK 377
K+FVGGL+WET LR++F +G+I V TD ++GRS+G+ F+ F PE+ K
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQK 63
Score = 47.2 bits (107), Expect = 9e-06
Identities = 22/67 (32%), Positives = 34/67 (50%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKT 629
K+FVGGL E + N+F +FG I++ + DK+ + KG+ F+TF +
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 630 PKRTIGG 650
P I G
Sbjct: 68 PAPVIDG 74
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 60.1 bits (139), Expect = 1e-09
Identities = 26/56 (46%), Positives = 38/56 (67%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXK 377
K+FVGGL+WET LR++F +G+I V TD ++GRS+G+ F+ F PE+ K
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQK 63
Score = 47.2 bits (107), Expect = 9e-06
Identities = 22/67 (32%), Positives = 34/67 (50%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKT 629
K+FVGGL E + N+F +FG I++ + DK+ + KG+ F+TF +
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 630 PKRTIGG 650
P I G
Sbjct: 68 PAPVIDG 74
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 59.7 bits (138), Expect = 2e-09
Identities = 43/139 (30%), Positives = 62/139 (44%), Gaps = 8/139 (5%)
Frame = +3
Query: 213 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMAAG 392
L+ G L + T+ L D F + S+ V D N RS G+A+I F P + M A
Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAMEAL 109
Query: 393 EHT--------INNXKVXPXKAKARHGKIFVGGLXXEISDDEIXNFFSEFGTILQVEMPF 548
+T I P + G IF+ L I + + FS FGTIL ++
Sbjct: 110 NYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAM 169
Query: 549 DKTKNQRKGFCFITFESEQ 605
D T + KG+ F+ FE E+
Sbjct: 170 DVT-GRSKGYGFVQFEKEE 187
Score = 48.4 bits (110), Expect = 4e-06
Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 14/142 (9%)
Frame = +3
Query: 213 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMAAG 392
+F+ L +K L + F ++G I S V D TGRS+G+ F+ F+ ES +
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 393 EHTINNXKV--------XPXKAK------ARHGKIFVGGLXXEISDDEIXNFFSEFGTIL 530
+ N K +A+ R ++V L EI +DE+ F +FG I
Sbjct: 197 NGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVIS 256
Query: 531 QVEMPFDKTKNQRKGFCFITFE 596
+ D++ N R F F+ FE
Sbjct: 257 SAVVMRDQSGNSR-CFGFVNFE 277
Score = 40.7 bits (91), Expect = 8e-04
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = +3
Query: 213 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMA 386
L++ L D++L++ F YG + S V +P G SRGF F+ + PE + ++
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALS 390
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 59.3 bits (137), Expect = 2e-09
Identities = 22/48 (45%), Positives = 33/48 (68%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 353
KLF+GGLSW ++ L+D F ++GE+ + + D +GRSRGF F+ F
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDF 89
Score = 46.4 bits (105), Expect = 2e-05
Identities = 17/51 (33%), Positives = 30/51 (58%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESE 602
K+F+GGL + + + + FS FG + +V + +DK + +GF F+ F E
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEE 92
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 58.4 bits (135), Expect = 4e-09
Identities = 24/53 (45%), Positives = 36/53 (67%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPES 368
K+FVGGL+WET + ++ HF +GEI V TD +GRS+G+ F+ F+ E+
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEA 66
Score = 44.4 bits (100), Expect = 7e-05
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQ 605
K+FVGGL E + + F +FG IL+ + DK + KG+ F+TF +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAE 65
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 58.4 bits (135), Expect = 4e-09
Identities = 24/53 (45%), Positives = 36/53 (67%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPES 368
K+FVGGL+WET + ++ HF +GEI V TD +GRS+G+ F+ F+ E+
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEA 66
Score = 44.4 bits (100), Expect = 7e-05
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQ 605
K+FVGGL E + + F +FG IL+ + DK + KG+ F+TF +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAE 65
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 58.4 bits (135), Expect = 4e-09
Identities = 24/53 (45%), Positives = 36/53 (67%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPES 368
K+FVGGL+WET + ++ HF +GEI V TD +GRS+G+ F+ F+ E+
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEA 66
Score = 44.4 bits (100), Expect = 7e-05
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQ 605
K+FVGGL E + + F +FG IL+ + DK + KG+ F+TF +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAE 65
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 58.0 bits (134), Expect = 5e-09
Identities = 24/53 (45%), Positives = 32/53 (60%)
Frame = +3
Query: 198 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 356
D + + FVGGL+W T D+ L F YG++ + D TGRSRGF F+ FK
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFK 57
Score = 41.5 bits (93), Expect = 5e-04
Identities = 16/59 (27%), Positives = 34/59 (57%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLK 626
+ FVGGL D + F+++G ++ ++ D+ + +GF F+TF+ E+ + D ++
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIE 67
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 58.0 bits (134), Expect = 5e-09
Identities = 24/53 (45%), Positives = 32/53 (60%)
Frame = +3
Query: 198 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 356
D + + FVGGL+W T D+ L F YG++ + D TGRSRGF F+ FK
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFK 57
Score = 41.5 bits (93), Expect = 5e-04
Identities = 16/59 (27%), Positives = 34/59 (57%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLK 626
+ FVGGL D + F+++G ++ ++ D+ + +GF F+TF+ E+ + D ++
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIE 67
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 57.6 bits (133), Expect = 7e-09
Identities = 41/193 (21%), Positives = 78/193 (40%), Gaps = 15/193 (7%)
Frame = +3
Query: 81 MANNDNFAQDIT-TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKEL 257
++ N+A++ D + G + + + P ++ KLFVG L ++ + L
Sbjct: 70 VSQTSNWAEEEEGEDGSIGGTSVTVDESFESEDGVGFPEPPEEAKLFVGNLPYDVDSQAL 129
Query: 258 RDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMAA-GEHTINNXKVXPXKA 434
F G + V + +T +SRGF F+ E K + +N ++ +A
Sbjct: 130 AMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRA 189
Query: 435 KARHGK-------------IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKG 575
R + I+VG L ++ + FSE G ++ + D+ + +G
Sbjct: 190 APRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRG 249
Query: 576 FCFITFESEQXVN 614
F F+ +E VN
Sbjct: 250 FGFVQMSNENEVN 262
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMAA 389
+++VG L W+ L F +G++ V +D TGRSRGF F+ + +AA
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 57.6 bits (133), Expect = 7e-09
Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = +3
Query: 183 EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKA 359
EA RD RK+FV GL WETT + L F YGEI V D TG+++GF F++FK
Sbjct: 95 EAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKT 154
Query: 360 PESIXKVMAAGEHTINN 410
+ + + + I N
Sbjct: 155 RKGAKEALKEPKKRILN 171
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/67 (34%), Positives = 36/67 (53%)
Frame = +3
Query: 444 HGKIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLL 623
H KIFV GL E + + + F +G I + + DK + KGF F+ F++ + + L
Sbjct: 103 HRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEAL 162
Query: 624 KTPKRTI 644
K PK+ I
Sbjct: 163 KEPKKRI 169
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 57.6 bits (133), Expect = 7e-09
Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = +3
Query: 183 EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKA 359
EA RD RK+FV GL WETT + L F YGEI V D TG+++GF F++FK
Sbjct: 95 EAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKT 154
Query: 360 PESIXKVMAAGEHTINN 410
+ + + + I N
Sbjct: 155 RKGAKEALKEPKKRILN 171
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/67 (34%), Positives = 36/67 (53%)
Frame = +3
Query: 444 HGKIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLL 623
H KIFV GL E + + + F +G I + + DK + KGF F+ F++ + + L
Sbjct: 103 HRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEAL 162
Query: 624 KTPKRTI 644
K PK+ I
Sbjct: 163 KEPKKRI 169
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 57.2 bits (132), Expect = 9e-09
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Frame = +3
Query: 132 NGNAENGGGDSQDHNSAEAPGRD--DDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVK 305
+G+A GD + ++A D D +LFV L + T++EL +HF +G+I +++
Sbjct: 234 DGDAMEVEGDGKVAQESKAVSDDVLDTGRLFVRNLPYTATEEELMEHFSTFGKISEVHLV 293
Query: 306 TDPNTGRSRGFAFIVFKAPESIXKVM 383
D T RSRG A+I++ PE + M
Sbjct: 294 LDKETKRSRGIAYILYLIPECAARAM 319
Score = 39.1 bits (87), Expect = 0.003
Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 20/159 (12%)
Frame = +3
Query: 189 PGRDDDRKLFVGGLSWETTDKELRDHFG---AYGEIXSINVKTDPNTGR--SRGFAFIVF 353
P + L V LS++TTD+ L+ HF G+I S+ + + S G+ F+ F
Sbjct: 563 PDVTESNVLNVKNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGFVEF 622
Query: 354 KAPESIXKVMAAGEHTI--------------NNXKVXPXKAKARH-GKIFVGGLXXEISD 488
+ E+ V + T+ + KV K + K+ V + E +
Sbjct: 623 DSVETATSVYRDLQGTVLDGHALILRFCENKRSDKVGKDSNKDKPCTKLHVKNIAFEATK 682
Query: 489 DEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQ 605
E+ FS FG I + +P K Q G+ F+ F ++Q
Sbjct: 683 RELRQLFSPFGQIKSMRLP-KKNIGQYAGYAFVEFVTKQ 720
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 57.2 bits (132), Expect = 9e-09
Identities = 41/172 (23%), Positives = 74/172 (43%), Gaps = 8/172 (4%)
Frame = +3
Query: 135 GNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDP 314
G GGGD H + + L+VG L + TD +L D+F ++ S+ V D
Sbjct: 30 GIGVGGGGDGVTHGALCS--------LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDA 81
Query: 315 NTGRSRGFAFIVFKAPESIXKVMAAGEHTINNXKVXPXKAKARH--------GKIFVGGL 470
T S G+ ++ + + K M ++ N K+ +R G +FV L
Sbjct: 82 ATNTSLGYGYVNYSNTDDAEKAMQKLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNL 141
Query: 471 XXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLK 626
+ + + FS GTI+ ++ D Q +G+ F+ F++E + ++
Sbjct: 142 DKSVDNKTLHEAFSGCGTIVSCKVATDH-MGQSRGYGFVQFDTEDSAKNAIE 192
Score = 46.0 bits (104), Expect = 2e-05
Identities = 47/171 (27%), Positives = 74/171 (43%), Gaps = 25/171 (14%)
Frame = +3
Query: 213 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXK-VMAA 389
++V LS TTD EL+ FG YG I S V D G+SR F F+ F+ PE + V A
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRD-GDGKSRCFGFVNFENPEDAARAVEAL 285
Query: 390 GEHTINNXKVXPXKAKARH-----------------GKIFVG------GLXXEISDDEIX 500
++ + KA+ + G F G L ++D+++
Sbjct: 286 NGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLR 345
Query: 501 NFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKTPK-RTIGG 650
F+EFGTI ++ D + KG F+ F + + +L + +GG
Sbjct: 346 ELFAEFGTITSCKVMRDPS-GTSKGSGFVAFSAASEASRVLNEMNGKMVGG 395
Score = 44.8 bits (101), Expect = 5e-05
Identities = 23/72 (31%), Positives = 37/72 (51%)
Frame = +3
Query: 168 DHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFI 347
+ S++ + D L+V L TD++LR+ F +G I S V DP +G S+G F+
Sbjct: 315 EQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFV 373
Query: 348 VFKAPESIXKVM 383
F A +V+
Sbjct: 374 AFSAASEASRVL 385
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 57.2 bits (132), Expect = 9e-09
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Frame = +3
Query: 174 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 353
+ AE PG L+V GLS T+++L DHF G++ +++ DP T SRGF FI
Sbjct: 68 SDAENPGNS----LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISM 123
Query: 354 KAPESIXKVMAAGEHTINNXKVXP-XKAKARHGK 452
K+ + + + +H++ +V KA+ R G+
Sbjct: 124 KSVGDANRCIRSLDHSVLQGRVITVEKARRRRGR 157
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 56.0 bits (129), Expect = 2e-08
Identities = 39/170 (22%), Positives = 76/170 (44%), Gaps = 14/170 (8%)
Frame = +3
Query: 138 NAENGGGDSQDHNS---AEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKT 308
+ + G DH S + R KLFVG + T++E+R +F +G + + +
Sbjct: 94 SGQKRGYPISDHGSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIK 153
Query: 309 DPNTGRSRGFAFIVFKAPESIXKVMAAGEHTIN-NXKVXPXKAKARHG----------KI 455
D TG+ +G F+ + + + + A + I P + + G K+
Sbjct: 154 DKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKL 213
Query: 456 FVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQ 605
FVG L + ++ E+ F +FG + V + D+ + Q +G F+ + S++
Sbjct: 214 FVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSSKE 262
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 56.0 bits (129), Expect = 2e-08
Identities = 39/170 (22%), Positives = 76/170 (44%), Gaps = 14/170 (8%)
Frame = +3
Query: 138 NAENGGGDSQDHNS---AEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKT 308
+ + G DH S + R KLFVG + T++E+R +F +G + + +
Sbjct: 94 SGQKRGYPISDHGSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIK 153
Query: 309 DPNTGRSRGFAFIVFKAPESIXKVMAAGEHTIN-NXKVXPXKAKARHG----------KI 455
D TG+ +G F+ + + + + A + I P + + G K+
Sbjct: 154 DKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKL 213
Query: 456 FVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQ 605
FVG L + ++ E+ F +FG + V + D+ + Q +G F+ + S++
Sbjct: 214 FVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSSKE 262
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 56.0 bits (129), Expect = 2e-08
Identities = 35/144 (24%), Positives = 71/144 (49%), Gaps = 8/144 (5%)
Frame = +3
Query: 198 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXK 377
++ KLFVG + ++ +L F + + +N+ D T SRG F++ + E K
Sbjct: 15 EESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADK 74
Query: 378 VMAA--------GEHTINNXKVXPXKAKARHGKIFVGGLXXEISDDEIXNFFSEFGTILQ 533
++ A G +++ K + + K+FVG L +S+ E+ + FS++GTI
Sbjct: 75 LVNACHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYGTIKD 134
Query: 534 VEMPFDKTKNQRKGFCFITFESEQ 605
+++ + KG F+ +E+++
Sbjct: 135 LQI-LRGAQQTSKGCAFLKYETKE 157
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +3
Query: 213 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 353
LF+ + E D+EL F ++G + S V D TG S+ F + F
Sbjct: 350 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGKLSF 396
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 56.0 bits (129), Expect = 2e-08
Identities = 35/144 (24%), Positives = 71/144 (49%), Gaps = 8/144 (5%)
Frame = +3
Query: 198 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXK 377
++ KLFVG + ++ +L F + + +N+ D T SRG F++ + E K
Sbjct: 15 EESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADK 74
Query: 378 VMAA--------GEHTINNXKVXPXKAKARHGKIFVGGLXXEISDDEIXNFFSEFGTILQ 533
++ A G +++ K + + K+FVG L +S+ E+ + FS++GTI
Sbjct: 75 LVNACHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYGTIKD 134
Query: 534 VEMPFDKTKNQRKGFCFITFESEQ 605
+++ + KG F+ +E+++
Sbjct: 135 LQI-LRGAQQTSKGCAFLKYETKE 157
Score = 31.1 bits (67), Expect = 0.66
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +3
Query: 213 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 353
LF+ + E D+EL F ++G + S V D TG S+ F F+ +
Sbjct: 351 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSY 397
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 56.0 bits (129), Expect = 2e-08
Identities = 41/151 (27%), Positives = 67/151 (44%), Gaps = 8/151 (5%)
Frame = +3
Query: 177 SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 356
+AEA + L+VG L + L D F + ++ V D T RS G+A++ F
Sbjct: 35 AAEALQTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFA 93
Query: 357 APESIXKVMAAGEHT-INNXKVX-------PXKAKARHGKIFVGGLXXEISDDEIXNFFS 512
PE + M + + I + + P + G +F+ L I + + FS
Sbjct: 94 NPEDASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFS 153
Query: 513 EFGTILQVEMPFDKTKNQRKGFCFITFESEQ 605
FGTIL ++ D + KG+ F+ FE E+
Sbjct: 154 SFGTILSCKVAMD-VVGRSKGYGFVQFEKEE 183
Score = 46.4 bits (105), Expect = 2e-05
Identities = 26/68 (38%), Positives = 36/68 (52%)
Frame = +3
Query: 165 QDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAF 344
QD +E+ ++V L E TD EL+ FG YG+I S V D +G SR F F
Sbjct: 211 QDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGF 269
Query: 345 IVFKAPES 368
+ F +PE+
Sbjct: 270 VNFVSPEA 277
Score = 37.5 bits (83), Expect = 0.008
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +3
Query: 213 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVM 383
L++ L D++L++ F YG + S V + + G SRGF F+ + PE M
Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMN-SQGLSRGFGFVAYSNPEEALLAM 385
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 56.0 bits (129), Expect = 2e-08
Identities = 22/50 (44%), Positives = 32/50 (64%)
Frame = +3
Query: 204 DRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 353
+ ++FVGGLSW+ T+++L F YG+I + +TGR RGF FI F
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITF 60
Score = 43.6 bits (98), Expect = 1e-04
Identities = 17/59 (28%), Positives = 35/59 (59%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLK 626
+IFVGGL ++++ ++ + F +G I + ++ + + +GF FITF + +D +K
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 56.0 bits (129), Expect = 2e-08
Identities = 22/50 (44%), Positives = 32/50 (64%)
Frame = +3
Query: 204 DRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 353
+ ++FVGGLSW+ T+++L F YG+I + +TGR RGF FI F
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITF 60
Score = 43.6 bits (98), Expect = 1e-04
Identities = 17/59 (28%), Positives = 35/59 (59%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLK 626
+IFVGGL ++++ ++ + F +G I + ++ + + +GF FITF + +D +K
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/60 (40%), Positives = 35/60 (58%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMAA 389
KLF+GG+++ + LR+ F YGE+ V D TGRSRGF F+ F + E+ + A
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Score = 43.6 bits (98), Expect = 1e-04
Identities = 14/59 (23%), Positives = 34/59 (57%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLK 626
K+F+GG+ + +D + F+++G ++ + D+ + +GF F+TF S + + ++
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 55.6 bits (128), Expect = 3e-08
Identities = 45/204 (22%), Positives = 86/204 (42%), Gaps = 24/204 (11%)
Frame = +3
Query: 90 NDNFAQDITTDNQLNGNAENGGGD-SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDH 266
+D + + ++ + G + ++ + +A G ++ +L+VG L + T EL
Sbjct: 78 DDEIQASVEEEEEVEEEGDEGEEEVEEEKQTTQASG--EEGRLYVGNLPYTITSSELSQI 135
Query: 267 FGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVM------AAGEHTIN-NXKVXP 425
FG G + + + D T RSRGF F+ + E + M G T+ N P
Sbjct: 136 FGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVP 195
Query: 426 -------XKAKARHG---------KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKT 557
+ K R K++ G L ++ + + F + +L ++ +++
Sbjct: 196 RGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERN 255
Query: 558 KNQRKGFCFITFESEQXVNDLLKT 629
+ +GF FI+FES + V L T
Sbjct: 256 TGRSRGFGFISFESAENVQSALAT 279
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 55.6 bits (128), Expect = 3e-08
Identities = 22/58 (37%), Positives = 36/58 (62%)
Frame = +3
Query: 198 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESI 371
D++ + FVGGL+W T ++ + F +GE+ + D TGRS+GF F+ FK +S+
Sbjct: 41 DNEYRCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSM 98
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESE 602
+ FVGGL + I F+EFG + ++ D+ + KGF F+TF+ E
Sbjct: 45 RCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDE 95
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 54.8 bits (126), Expect = 5e-08
Identities = 43/140 (30%), Positives = 63/140 (45%), Gaps = 26/140 (18%)
Frame = +3
Query: 204 DRKLFVGGLSWETTDKELRDHF-GAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKV 380
D +FVG L+ E TD L D F YG + V D TGRS+G+ F+ F +
Sbjct: 153 DHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRA 212
Query: 381 MAA--GEH-TINNXKVXPXKAK---------------ARHG-------KIFVGGLXXEIS 485
M G++ + ++ P K A G IFVGGL ++
Sbjct: 213 MTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVT 272
Query: 486 DDEIXNFFSEFGTILQVEMP 545
DDE+ + F +FG +L V++P
Sbjct: 273 DDELKSIFGQFGELLHVKIP 292
Score = 44.8 bits (101), Expect = 5e-05
Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 16/165 (9%)
Frame = +3
Query: 156 GDSQDHNSAEAPGRDDDRK-LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSR 332
G Q ++ PG D K L++G L + + F GE S V + TG+S
Sbjct: 42 GQHQYGIGSQNPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSE 101
Query: 333 GFAFIVFKAPESIXKVM-----AAGEHTINNXKVXPXKAKARHGK---------IFVGGL 470
G+ FI F + +V+ A T ++ +A A + IFVG L
Sbjct: 102 GYGFIEFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDL 161
Query: 471 XXEISDDEIXNFFSE-FGTILQVEMPFDKTKNQRKGFCFITFESE 602
E++D + + F +G++ ++ D+T + KG+ F+ F E
Sbjct: 162 APEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADE 206
Score = 37.5 bits (83), Expect = 0.008
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +3
Query: 165 QDHNSAEAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFA 341
Q+ A A D ++ +FVGGL TD EL+ FG +GE+ ++VK P G+ GF
Sbjct: 245 QNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGEL--LHVKIPP--GKRCGFV 300
Query: 342 FIVFKA 359
KA
Sbjct: 301 QYANKA 306
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 54.8 bits (126), Expect = 5e-08
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 356
+ FVGGL+W T D++L+ F +G++ + D +GRSRGF F+ FK
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFK 55
Score = 49.2 bits (112), Expect = 2e-06
Identities = 20/67 (29%), Positives = 40/67 (59%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKT 629
+ FVGGL +D+++ FS+FG ++ ++ D+ + +GF F+TF+ E+ + D ++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 630 PKRTIGG 650
+ GG
Sbjct: 67 MNGSGGG 73
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 54.8 bits (126), Expect = 5e-08
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 356
+ FVGGL+W T D++L+ F +G++ + D +GRSRGF F+ FK
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFK 55
Score = 47.6 bits (108), Expect = 7e-06
Identities = 18/59 (30%), Positives = 37/59 (62%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLK 626
+ FVGGL +D+++ FS+FG ++ ++ D+ + +GF F+TF+ E+ + D ++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 54.8 bits (126), Expect = 5e-08
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 356
+ FVGGL+W T D++L+ F +G++ + D +GRSRGF F+ FK
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFK 55
Score = 47.6 bits (108), Expect = 7e-06
Identities = 18/59 (30%), Positives = 37/59 (62%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLK 626
+ FVGGL +D+++ FS+FG ++ ++ D+ + +GF F+TF+ E+ + D ++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 54.8 bits (126), Expect = 5e-08
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 356
+ FVGGL+W T D++L+ F +G++ + D +GRSRGF F+ FK
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFK 55
Score = 47.6 bits (108), Expect = 7e-06
Identities = 18/59 (30%), Positives = 37/59 (62%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLK 626
+ FVGGL +D+++ FS+FG ++ ++ D+ + +GF F+TF+ E+ + D ++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 54.8 bits (126), Expect = 5e-08
Identities = 27/131 (20%), Positives = 70/131 (53%), Gaps = 3/131 (2%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMAA 389
++++GG+ + T+ +L+ G+ GE+ + + + ++G +G+AF+ F++ + + +
Sbjct: 93 EVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDT 152
Query: 390 GEHT-INNXKVXPXKAKARHGKIFVGGLXXEISDDEIXNFFSEFGTILQ-VEMPFD-KTK 560
+T ++ +A+H ++F+G + + +I + G +Q VE+P + +
Sbjct: 153 LNNTDFRGKRIKCSTTQAKH-RLFLGNVPRNWMESDIKKAANRIGPGVQIVELPKEPQNM 211
Query: 561 NQRKGFCFITF 593
+ +GF FI +
Sbjct: 212 GRNRGFAFIEY 222
Score = 40.7 bits (91), Expect = 8e-04
Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +3
Query: 444 HG-KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDL 620
HG ++++GG+ + ++ ++ F G + +V + +K KG+ F+TF S+ +
Sbjct: 90 HGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEA 149
Query: 621 LKTPKRT 641
+ T T
Sbjct: 150 IDTLNNT 156
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 54.4 bits (125), Expect = 6e-08
Identities = 26/65 (40%), Positives = 36/65 (55%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMAA 389
K++VGGL W T + L + F +GEI +NV D T RS+G+ F+ FK ES +
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKD 73
Query: 390 GEHTI 404
TI
Sbjct: 74 PNPTI 78
Score = 50.8 bits (116), Expect = 8e-07
Identities = 23/67 (34%), Positives = 36/67 (53%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKT 629
KI+VGGL + + NFF FG I+ V + D+ ++ +G+ F+TF+ + K
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKD 73
Query: 630 PKRTIGG 650
P TI G
Sbjct: 74 PNPTIEG 80
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 54.4 bits (125), Expect = 6e-08
Identities = 24/69 (34%), Positives = 39/69 (56%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMAA 389
K+FVGGL+W+T + + DHF YG+I + +D T RS+G+ F+ FK ++ +
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACED 77
Query: 390 GEHTINNXK 416
IN +
Sbjct: 78 STPIINGRR 86
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/49 (34%), Positives = 30/49 (61%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFE 596
K+FVGGL + + + + F ++G IL+ + DK + KG+ F+TF+
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFK 66
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 54.0 bits (124), Expect = 8e-08
Identities = 27/74 (36%), Positives = 38/74 (51%)
Frame = +3
Query: 198 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXK 377
D + K++V GL W T + L +F +GEI V D T RS+GF F+ F+ ES +
Sbjct: 6 DRETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATR 65
Query: 378 VMAAGEHTINNXKV 419
HTI+ V
Sbjct: 66 ACENPNHTIDGRTV 79
Score = 44.0 bits (99), Expect = 9e-05
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = +3
Query: 441 RHGKIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDL 620
R KI+V GL + + ++F FG I+ ++ D + KGF F+TF +
Sbjct: 7 RETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRA 66
Query: 621 LKTPKRTIGG 650
+ P TI G
Sbjct: 67 CENPNHTIDG 76
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 54.0 bits (124), Expect = 8e-08
Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 11/142 (7%)
Frame = +3
Query: 213 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMAAG 392
L+VG LS + T+K+L D F + S+++ + TG+S +A+I F +P S M
Sbjct: 23 LYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRL 82
Query: 393 EHTINNXKV---------XPXKAKARHG--KIFVGGLXXEISDDEIXNFFSEFGTILQVE 539
H+ K + + R G ++V L I+ + F FG+IL +
Sbjct: 83 NHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGSILSCK 142
Query: 540 MPFDKTKNQRKGFCFITFESEQ 605
+ + Q KGF F+ F++EQ
Sbjct: 143 VV--EENGQSKGFGFVQFDTEQ 162
Score = 46.0 bits (104), Expect = 2e-05
Identities = 28/74 (37%), Positives = 37/74 (50%)
Frame = +3
Query: 162 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFA 341
++D +A A G D ++V L TD L F YG + S+ V D GRSRGF
Sbjct: 188 NKDERAAMA-GNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRD-GMGRSRGFG 245
Query: 342 FIVFKAPESIXKVM 383
F+ F PE+ K M
Sbjct: 246 FVNFCNPENAKKAM 259
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/47 (44%), Positives = 27/47 (57%)
Frame = +3
Query: 213 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 353
L+V LS + LR+ FG YG+I S V N GRS+GF F+ F
Sbjct: 306 LYVKNLSESMNETRLREIFGCYGQIVSAKVMCHEN-GRSKGFGFVCF 351
Score = 39.1 bits (87), Expect = 0.003
Identities = 36/139 (25%), Positives = 57/139 (41%), Gaps = 12/139 (8%)
Frame = +3
Query: 213 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMAA- 389
L+V L T L F +G I S V + G+S+GF F+ F +S +A
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVVEE--NGQSKGFGFVQFDTEQSAVSARSAL 171
Query: 390 ------GEHTINNXKVXPXKAKARHGK-----IFVGGLXXEISDDEIXNFFSEFGTILQV 536
G+ + + A G ++V L ++DD + FS++GT+ V
Sbjct: 172 HGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSV 231
Query: 537 EMPFDKTKNQRKGFCFITF 593
+ D R GF F+ F
Sbjct: 232 VVMRDGMGRSR-GFGFVNF 249
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 54.0 bits (124), Expect = 8e-08
Identities = 33/159 (20%), Positives = 69/159 (43%), Gaps = 3/159 (1%)
Frame = +3
Query: 159 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGF 338
+ + H+ + + ++FVG L ++++L+ FG GE+ + + +P T +S+G
Sbjct: 198 EEEHHDVLHERRKRKEFEIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGS 257
Query: 339 AFIVFKAPESIXKVMAAGEHTINNXKVXPXKAKARHGKIFVGGLXXEISDDEIXNFFSEF 518
AF+ F E + + + + N K A + +FVG + + + + +
Sbjct: 258 AFLRFATVEQAKRAVKELKSPMINGKKCGVTASQDNDTLFVGNICKIWTPEALREKLKHY 317
Query: 519 G--TILQVEMPFDKTK-NQRKGFCFITFESEQXVNDLLK 626
G + + + D N +G+ F+ F S D K
Sbjct: 318 GVENMDDITLVEDSNNVNMNRGYAFLEFSSRSDAMDAHK 356
Score = 31.1 bits (67), Expect = 0.66
Identities = 19/79 (24%), Positives = 38/79 (48%)
Frame = +3
Query: 207 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMA 386
+ +F+ GL ++ +RD YG++ + + + + R + F F+ F E+ V
Sbjct: 391 KTIFIDGLLPSWNEERVRDLLKPYGKLEKVELARNMPSARRKDFGFVTFDTHEA--AVSC 448
Query: 387 AGEHTINNXKVXPXKAKAR 443
A INN ++ + KA+
Sbjct: 449 A--KFINNSELGEGEDKAK 465
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 54.0 bits (124), Expect = 8e-08
Identities = 24/59 (40%), Positives = 38/59 (64%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMA 386
+LFV GLS TT+++L+D F ++G++ V TD ++GRS+GF F+ + E K A
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKA 93
Score = 35.5 bits (78), Expect = 0.031
Identities = 13/48 (27%), Positives = 29/48 (60%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITF 593
++FV GL +++++ + F+ FG ++ + D+ + KGF F+T+
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTY 82
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 53.6 bits (123), Expect = 1e-07
Identities = 42/162 (25%), Positives = 75/162 (46%), Gaps = 17/162 (10%)
Frame = +3
Query: 159 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGF 338
D +D A+ P RD R +F + + T++++ + F G++ + + D N+ RS+G
Sbjct: 154 DKKDEPEAD-PERDQ-RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 211
Query: 339 AFIVFKAPESIXKVMA-AGEHTINNX-KVXPXKAKARHG---------------KIFVGG 467
+I F S+ +A +G+ + V P +A+ K++VG
Sbjct: 212 GYIEFYDVMSVPMAIALSGQLFLGQPVMVKPSEAEKNLAQSNSTTVGGTGPADRKLYVGN 271
Query: 468 LXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITF 593
L +S+ ++ F FG + V++P D Q KGF FI F
Sbjct: 272 LHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQF 313
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 53.6 bits (123), Expect = 1e-07
Identities = 23/48 (47%), Positives = 32/48 (66%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 353
++FVGGLS E TD++L F +G+I + + +TGRSRGF FI F
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITF 55
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = +3
Query: 438 ARHG-KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVN 614
A+ G +IFVGGL E++D ++ FS FG IL ++ ++ + +GF FITF + ++
Sbjct: 3 AKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMD 62
Query: 615 DLLK 626
+ ++
Sbjct: 63 ESIR 66
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 53.6 bits (123), Expect = 1e-07
Identities = 21/49 (42%), Positives = 33/49 (67%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 356
K+FVG L+W TT +LR +F +G++ NV ++ GRS+G+ FI F+
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFR 61
Score = 40.7 bits (91), Expect = 8e-04
Identities = 20/67 (29%), Positives = 32/67 (47%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKT 629
KIFVG L + D++ +F +FG ++ + + + KG+ FITF L+
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQN 72
Query: 630 PKRTIGG 650
K I G
Sbjct: 73 SKPIIDG 79
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 53.6 bits (123), Expect = 1e-07
Identities = 27/82 (32%), Positives = 45/82 (54%)
Frame = +3
Query: 174 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 353
+ AE PG L+V GLS T+++L DHF G++ +++ DP T SRGF FI
Sbjct: 38 SDAENPGNS----LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISM 93
Query: 354 KAPESIXKVMAAGEHTINNXKV 419
K+ + + + +H++ +V
Sbjct: 94 KSVGDANRCIRSLDHSVLQGRV 115
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 53.2 bits (122), Expect = 1e-07
Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 13/172 (7%)
Frame = +3
Query: 123 NQLNGNAENGGGDSQDHNSAEAPGRDDD-RKLFVGGLSWETTDKELRDHFGAYGEIXSIN 299
N+LN A NG ++ + R +F+ L K L + F A+G I S
Sbjct: 104 NELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCK 163
Query: 300 VKTDPNTGRSRGFAFIVFKAPE----SIXKV--MAAGEHT------INNXKVXPXKAKAR 443
V DP +G+S+G+ F+ + E +I K+ M + ++ + P K +
Sbjct: 164 VAVDP-SGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVK 222
Query: 444 HGKIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFES 599
++V L +SD+E+ F EFG + D + + KGF F+ FE+
Sbjct: 223 FTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRD-GEGKSKGFGFVNFEN 273
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/67 (37%), Positives = 34/67 (50%)
Frame = +3
Query: 183 EAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAP 362
EA + L+V L TD +LR+HF +G I S V DP +G SRG F+ F P
Sbjct: 319 EAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTP 377
Query: 363 ESIXKVM 383
E + +
Sbjct: 378 EEATRAI 384
Score = 37.5 bits (83), Expect = 0.008
Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 24/155 (15%)
Frame = +3
Query: 213 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK-APESIXKVMAA 389
++V LS +D+EL FG +G S + D G+S+GF F+ F+ + ++ V A
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRD-GEGKSKGFGFVNFENSDDAARAVDAL 284
Query: 390 GEHTINNXKVXPXKA-----------------------KARHGKIFVGGLXXEISDDEIX 500
T ++ + KA K++ ++V L ++DD++
Sbjct: 285 NGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLR 344
Query: 501 NFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQ 605
F+ FGTI ++ D + R G F+ F + +
Sbjct: 345 EHFAPFGTITSCKVMRDPSGVSR-GSGFVAFSTPE 378
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/70 (35%), Positives = 44/70 (62%)
Frame = +3
Query: 159 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGF 338
DS+D + +E+P +KLF+ GLS+ T++K LR F +GE+ + + D + RS+G+
Sbjct: 267 DSRDQDDSESPPVKT-KKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGY 325
Query: 339 AFIVFKAPES 368
AF+ + E+
Sbjct: 326 AFLEYTTEEA 335
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 52.4 bits (120), Expect = 3e-07
Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 9/151 (5%)
Frame = +3
Query: 180 AEAPGRDDDR-KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 356
AE +++R KLFVG + T+ +L F + + +N+ + T RG F+
Sbjct: 2 AEETMENEERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCP 61
Query: 357 APESIXKVMAA--------GEHTINNXKVXPXKAKARHGKIFVGGLXXEISDDEIXNFFS 512
E KV+ + G + K + + K+FVG L +S+ E+ + FS
Sbjct: 62 TREDADKVINSFHNKKTLPGASSPLQVKYADGELERLEHKLFVGMLPKNVSETEVQSLFS 121
Query: 513 EFGTILQVEMPFDKTKNQRKGFCFITFESEQ 605
E+GTI +++ + KG F+ +ES++
Sbjct: 122 EYGTIKDLQI-LRGSLQTSKGCLFLKYESKE 151
Score = 37.1 bits (82), Expect = 0.010
Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKT 629
K+FVG + +++ ++ F EF + +V + +KT +G CF+T + + + ++ +
Sbjct: 13 KLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINS 72
Query: 630 --PKRTIGG 650
K+T+ G
Sbjct: 73 FHNKKTLPG 81
Score = 33.1 bits (72), Expect = 0.16
Identities = 21/77 (27%), Positives = 37/77 (48%)
Frame = +3
Query: 213 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMAAG 392
LF+ + E D+EL F +G++ S V D TG S+ F FI + + + +
Sbjct: 332 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAI--- 388
Query: 393 EHTINNXKVXPXKAKAR 443
+T+N ++ K K +
Sbjct: 389 -NTMNGCQLSGKKLKVQ 404
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 51.6 bits (118), Expect = 4e-07
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
Frame = +3
Query: 135 GNAENGGG------DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSI 296
G+ +GGG S S G +L+VG LSW D L + F G++
Sbjct: 219 GSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEA 278
Query: 297 NVKTDPNTGRSRGFAFIVFKAPESIXK-VMAAGEHTINNXKVXPXKAKAR 443
V D ++GRS+GF F+ + + + K + + ++ ++ +A+AR
Sbjct: 279 RVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEAR 328
Score = 48.4 bits (110), Expect = 4e-06
Identities = 25/91 (27%), Positives = 38/91 (41%)
Frame = +3
Query: 99 FAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAY 278
F +++ + ++ D D E D KLFVG LS+ +L F +
Sbjct: 63 FVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESA 122
Query: 279 GEIXSINVKTDPNTGRSRGFAFIVFKAPESI 371
G + + V D TGRSRGF F+ +
Sbjct: 123 GNVEMVEVIYDKVTGRSRGFGFVTMSTAAEV 153
Score = 43.6 bits (98), Expect = 1e-04
Identities = 17/60 (28%), Positives = 33/60 (55%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKT 629
+++VG L + D + N F+E G +++ + +D+ + KGF F+T S Q V + +
Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 309
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXV 611
K+FVG L + ++ F G + VE+ +DK + +GF F+T + V
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEV 153
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 51.6 bits (118), Expect = 4e-07
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
Frame = +3
Query: 135 GNAENGGG------DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSI 296
G+ +GGG S S G +L+VG LSW D L + F G++
Sbjct: 227 GSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEA 286
Query: 297 NVKTDPNTGRSRGFAFIVFKAPESIXK-VMAAGEHTINNXKVXPXKAKAR 443
V D ++GRS+GF F+ + + + K + + ++ ++ +A+AR
Sbjct: 287 RVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEAR 336
Score = 48.4 bits (110), Expect = 4e-06
Identities = 25/91 (27%), Positives = 38/91 (41%)
Frame = +3
Query: 99 FAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAY 278
F +++ + ++ D D E D KLFVG LS+ +L F +
Sbjct: 63 FVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESA 122
Query: 279 GEIXSINVKTDPNTGRSRGFAFIVFKAPESI 371
G + + V D TGRSRGF F+ +
Sbjct: 123 GNVEMVEVIYDKVTGRSRGFGFVTMSTAAEV 153
Score = 43.6 bits (98), Expect = 1e-04
Identities = 17/60 (28%), Positives = 33/60 (55%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKT 629
+++VG L + D + N F+E G +++ + +D+ + KGF F+T S Q V + +
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXV 611
K+FVG L + ++ F G + VE+ +DK + +GF F+T + V
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEV 153
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 51.2 bits (117), Expect = 6e-07
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 12/167 (7%)
Frame = +3
Query: 177 SAEAPG--RDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIV 350
S AP R+ +FV L T+ L+D F +G I S V T + G+SRG+ F+
Sbjct: 100 SVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLED-GKSRGYGFVQ 158
Query: 351 FKAPESIXKVMAAGEHTINNXK----------VXPXKAKARHGKIFVGGLXXEISDDEIX 500
F+ ++ + TI K K + ++ +++ L ++S+D +
Sbjct: 159 FEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLR 218
Query: 501 NFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKTPKRT 641
F+EFG I+ + + D+ + R G+ F+ F++ + +T T
Sbjct: 219 EKFAEFGKIVSLAIAKDENRLCR-GYAFVNFDNPEDARRAAETVNGT 264
Score = 47.6 bits (108), Expect = 7e-06
Identities = 33/152 (21%), Positives = 68/152 (44%), Gaps = 8/152 (5%)
Frame = +3
Query: 213 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMAAG 392
L+VG L T+ L D F + + S+ + D ++GRS + + F + + +
Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85
Query: 393 EHTINNXKV--------XPXKAKARHGKIFVGGLXXEISDDEIXNFFSEFGTILQVEMPF 548
+++ N K+ P + G +FV L +++ + + F +FG I+ ++
Sbjct: 86 NNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVA- 144
Query: 549 DKTKNQRKGFCFITFESEQXVNDLLKTPKRTI 644
+ +G+ F+ FE E + ++T TI
Sbjct: 145 TLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTI 176
Score = 46.4 bits (105), Expect = 2e-05
Identities = 37/163 (22%), Positives = 72/163 (44%), Gaps = 24/163 (14%)
Frame = +3
Query: 213 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKV---- 380
L++ L + ++ LR+ F +G+I S+ + D N RG+AF+ F PE +
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENR-LCRGYAFVNFDNPEDARRAAETV 261
Query: 381 -----------MAAGEHTINNXKVXPXKAKARH---------GKIFVGGLXXEISDDEIX 500
+ + ++ + K +H I+V + ++++E+
Sbjct: 262 NGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELR 321
Query: 501 NFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKT 629
FS+ GTI ++ D+ K + KGF F+ F + + D +KT
Sbjct: 322 KHFSQCGTITSTKLMCDE-KGKSKGFGFVCFSTPEEAIDAVKT 363
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 51.2 bits (117), Expect = 6e-07
Identities = 24/56 (42%), Positives = 32/56 (57%)
Frame = +3
Query: 198 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPE 365
+ K++VG L W T LR+HF +G I S V D TGR+R FAF+ F + E
Sbjct: 209 ESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGE 264
Score = 44.0 bits (99), Expect = 9e-05
Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 25/141 (17%)
Frame = +3
Query: 252 ELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMAAGEHT---------- 401
+L D F +G + S+ V +P TG SRG ++ + S +A+ + T
Sbjct: 123 QLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVR 182
Query: 402 ----IN-----NXKVX---PXKA---KARHGKIFVGGLXXEISDDEIXNFFSEFGTILQV 536
+N N +V P K +++H K++VG L D + N FS+FGTI+
Sbjct: 183 YSVDMNPGTRRNPEVLNSTPKKILMYESQH-KVYVGNLPWFTQPDGLRNHFSKFGTIVST 241
Query: 537 EMPFDKTKNQRKGFCFITFES 599
+ D+ + + F F++F S
Sbjct: 242 RVLHDRKTGRNRVFAFLSFTS 262
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 50.4 bits (115), Expect = 1e-06
Identities = 41/168 (24%), Positives = 74/168 (44%), Gaps = 21/168 (12%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVM-- 383
KL+VGG+ +++T+ E+R +F + G I ++ K P G G AFI F + + +
Sbjct: 162 KLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDTEDGAKRALAF 221
Query: 384 ---AAGEH--TINN-XKVXPXKAKAR-------------HGKIFVGGLXXEISDDEIXNF 506
A G+ TI K R + ++++G L + ++ +I
Sbjct: 222 DRAAMGDRYLTIQQYVKTTTPSIPRRKTSSGFAPEMVDGYNRVYIGNLAWDTTERDIRKL 281
Query: 507 FSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKTPKRTIGG 650
FS+ I V + +K + KG+ + F+ V LK ++ I G
Sbjct: 282 FSDC-VINSVRLGKNKETGEFKGYAHVDFKDSVSVAIALKLDQQVICG 328
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/69 (26%), Positives = 37/69 (53%)
Frame = +3
Query: 198 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXK 377
D ++++G L+W+TT++++R F I S+ + + TG +G+A + FK S+
Sbjct: 259 DGYNRVYIGNLAWDTTERDIRKLFSDC-VINSVRLGKNKETGEFKGYAHVDFKDSVSVAI 317
Query: 378 VMAAGEHTI 404
+ + I
Sbjct: 318 ALKLDQQVI 326
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 50.0 bits (114), Expect = 1e-06
Identities = 26/101 (25%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Frame = +3
Query: 126 QLNGNAENGGGDSQDHN---SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSI 296
++ AE G SQD + SA D R ++VG + + T +E++ HF + G + +
Sbjct: 73 EMQAKAEKDMGASQDPSGGVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRV 132
Query: 297 NVKTDPNTGRSRGFAFIVFKAPESIXKVMAAGEHTINNXKV 419
+ TD G+ +GFA++ F E++ + E ++ ++
Sbjct: 133 TILTD-KFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQI 172
Score = 32.7 bits (71), Expect = 0.22
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITF-ESEQXVNDLL 623
I+VG + + +E+ F GT+ +V + DK Q KGF ++ F E E N L+
Sbjct: 105 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEVEAVQNSLI 161
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 50.0 bits (114), Expect = 1e-06
Identities = 19/61 (31%), Positives = 35/61 (57%)
Frame = +3
Query: 423 PXKAKARHGKIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESE 602
P + K++V GL ++D + + F +FG ++ + M DK N+ KGF F+ +E+E
Sbjct: 69 PSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETE 128
Query: 603 Q 605
+
Sbjct: 129 E 129
Score = 49.2 bits (112), Expect = 2e-06
Identities = 22/58 (37%), Positives = 34/58 (58%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVM 383
KL+V GLS+ TT+ LRD F +G + +N+ D R +GFAF+ ++ E K +
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAI 135
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/54 (38%), Positives = 31/54 (57%)
Frame = +3
Query: 198 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKA 359
+ + KLFVG LSW T + L F G++ V D +TGRSRG+ F+ + +
Sbjct: 174 ETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSS 227
Score = 44.8 bits (101), Expect = 5e-05
Identities = 35/153 (22%), Positives = 63/153 (41%), Gaps = 13/153 (8%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPES---IXKV 380
KL+ G L + L + + V + +TG+SRGFAF+ E I
Sbjct: 86 KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDN 145
Query: 381 MAAGEHTINNXKV----------XPXKAKARHGKIFVGGLXXEISDDEIXNFFSEFGTIL 530
+ E+ KV P + H K+FVG L ++ + + F E G ++
Sbjct: 146 LDGTEYLGRALKVNFADKPKPNKEPLYPETEH-KLFVGNLSWTVTSESLAGAFRECGDVV 204
Query: 531 QVEMPFDKTKNQRKGFCFITFESEQXVNDLLKT 629
+ FD + +G+ F+ + S+ + L++
Sbjct: 205 GARVVFDGDTGRSRGYGFVCYSSKAEMETALES 237
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 49.6 bits (113), Expect = 2e-06
Identities = 29/71 (40%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Frame = +3
Query: 156 GDSQDHNSAEAPGRDDDRK----LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTG 323
G N A A G+ +D +FVG LS E TD L D F A+ V D TG
Sbjct: 127 GQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTG 186
Query: 324 RSRGFAFIVFK 356
RSRGF F+ F+
Sbjct: 187 RSRGFGFVSFR 197
Score = 44.8 bits (101), Expect = 5e-05
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 10/149 (6%)
Frame = +3
Query: 189 PGRDDD--RKLFVGGLSWETTDKELRDHFGAYGEIXSIN-VKTDPNTGRSRGFAFIVFKA 359
PG D R ++ G + + T+ L++ F + G I S ++ D + S GF +
Sbjct: 55 PGFDPTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKS---SYGFVHYFDRR 111
Query: 360 PESIXKVMAAGEHTINNX-KVXPXKAKAR------HGKIFVGGLXXEISDDEIXNFFSEF 518
S+ + G H KV A + H IFVG L E++D + + FS F
Sbjct: 112 CASMAIMTLNGRHIFGQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAF 171
Query: 519 GTILQVEMPFDKTKNQRKGFCFITFESEQ 605
+ + +D+ + +GF F++F ++Q
Sbjct: 172 NSCSDARVMWDQKTGRSRGFGFVSFRNQQ 200
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 49.2 bits (112), Expect = 2e-06
Identities = 38/172 (22%), Positives = 73/172 (42%), Gaps = 21/172 (12%)
Frame = +3
Query: 159 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGF 338
++++ +A P + R++++G + T+++L +G + + V D +GRSR F
Sbjct: 60 ETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRF 119
Query: 339 AFIVFKAPESIXKVM-------AAGEHTINNXKVXPXKAKARHG--------------KI 455
F K+ E V+ G N P + K+
Sbjct: 120 GFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKV 179
Query: 456 FVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXV 611
+VG L ++ + + N FSE G ++ ++ ++ GF F+TF SE+ V
Sbjct: 180 YVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDV 231
Score = 44.8 bits (101), Expect = 5e-05
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +3
Query: 198 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESI-X 374
D K++VG L+ T + L + F G++ S V P T +S GF F+ F + E +
Sbjct: 174 DSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEA 233
Query: 375 KVMAAGEHTINNXKVXPXKA 434
++A + K+ KA
Sbjct: 234 AIVALNNSLLEGQKIRVNKA 253
Score = 35.1 bits (77), Expect = 0.041
Identities = 11/59 (18%), Positives = 34/59 (57%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLK 626
++++G + ++++++ E G + +V++ +DK + + F F T +S + N +++
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVE 135
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 49.2 bits (112), Expect = 2e-06
Identities = 20/52 (38%), Positives = 34/52 (65%)
Frame = +3
Query: 213 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPES 368
++VGG+ ++ T+ +L F YGEI +N+ D TG+S+GFAF+ ++ S
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRS 89
Score = 43.2 bits (97), Expect = 2e-04
Identities = 15/51 (29%), Positives = 33/51 (64%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQ 605
++VGG+ ++++ ++ FS++G I+ V + DK + KGF F+ +E ++
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQR 88
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 48.8 bits (111), Expect = 3e-06
Identities = 22/60 (36%), Positives = 36/60 (60%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMAA 389
KL++GGLS T + L+D F ++ + V T+ TGRSRG+ F+ F + +S ++A
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 48.8 bits (111), Expect = 3e-06
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF-KAPESIXKVMA 386
KLF+GGLS+ TT++ L + F G++ + D + RS+GF F+ F A E+ +M
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 387 AGEHTINNXKVXPXKAKAR 443
+N + AKA+
Sbjct: 95 FNGQQLNGRTIFVDYAKAK 113
Score = 41.1 bits (92), Expect = 6e-04
Identities = 16/50 (32%), Positives = 31/50 (62%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFES 599
K+F+GGL ++ + FS+ G +++ ++ D+ ++ KGF F+TF S
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFAS 84
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 48.4 bits (110), Expect = 4e-06
Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Frame = +3
Query: 120 DNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSIN 299
D G + G + G +++VG LSW D L F G++
Sbjct: 175 DGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEAR 234
Query: 300 VKTDPNTGRSRGFAFIVFKAPESIXKVMAAGEHT-INNXKVXPXKAKAR 443
V D ++GRS+GF F+ + + + + + + + ++ ++ +A+AR
Sbjct: 235 VIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEAR 283
Score = 48.0 bits (109), Expect = 5e-06
Identities = 18/60 (30%), Positives = 37/60 (61%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKT 629
+++VG L + D + + FSE G +++ + +D+ + KGF F+T++S Q V + +K+
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/64 (37%), Positives = 33/64 (51%)
Frame = +3
Query: 204 DRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVM 383
D KLFVG L + +L F + G + + V D TGRSRGF F+ S+ +V
Sbjct: 90 DLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTM---SSVSEVE 146
Query: 384 AAGE 395
AA +
Sbjct: 147 AAAQ 150
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXV 611
K+FVG L + ++ F G + VE+ +DK + +GF F+T S V
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEV 145
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 48.4 bits (110), Expect = 4e-06
Identities = 40/166 (24%), Positives = 76/166 (45%), Gaps = 23/166 (13%)
Frame = +3
Query: 165 QDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAF 344
+D EA D R +F ++ T++++ + F G++ + + D + RSRG +
Sbjct: 168 EDKVEPEADPERDQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGY 227
Query: 345 IVFKAPESIXKVMA-AGEHTINNX-KVXPXKAK--------ARHG-------------KI 455
+ F S+ +A +G+ + V P +A+ A G ++
Sbjct: 228 VEFYDTMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRL 287
Query: 456 FVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITF 593
+VG L +S+D++ F FG++ V++P D+T KGF F+ F
Sbjct: 288 YVGNLHINMSEDDLRKVFESFGSVELVQVPRDET-GLCKGFGFVQF 332
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 48.0 bits (109), Expect = 5e-06
Identities = 25/66 (37%), Positives = 34/66 (51%)
Frame = +3
Query: 189 PGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPES 368
P + LFV GLS TT + LR F +GE+ V TD +G S+GF F+ + E
Sbjct: 50 PQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLED 109
Query: 369 IXKVMA 386
K +A
Sbjct: 110 SAKGIA 115
Score = 32.3 bits (70), Expect = 0.29
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITF 593
+FV GL + + + F++FG + ++ D+ KGF F+ +
Sbjct: 58 LFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRY 104
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 48.0 bits (109), Expect = 5e-06
Identities = 20/63 (31%), Positives = 37/63 (58%)
Frame = +3
Query: 174 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 353
+S G + ++FVGGL + T+ ++R+ ++G + N+ D TG S+G+AF V+
Sbjct: 364 SSGSTGGLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVY 423
Query: 354 KAP 362
+ P
Sbjct: 424 QDP 426
Score = 31.5 bits (68), Expect = 0.50
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDL 620
+IFVGGL ++ +I FG + + D+ KG+ F ++ + V D+
Sbjct: 376 RIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQ-DPSVTDI 431
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 48.0 bits (109), Expect = 5e-06
Identities = 24/60 (40%), Positives = 35/60 (58%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMAA 389
K+FVGGLS T + L++ FG++G+I V D +G SRGF F+ + + E M A
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA 96
Score = 40.7 bits (91), Expect = 8e-04
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLK 626
KIFVGGL + + F FG I+ + D+ +GF F+T++S + N+ ++
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQ 95
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 47.2 bits (107), Expect = 9e-06
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +3
Query: 204 DRKLFVGGLSWETTDKELRDHFGA-YGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKV 380
D +FVG L+ + TD L++ F Y + V TDP+TGRS+G+ F+ F +
Sbjct: 115 DHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRA 174
Query: 381 MA 386
MA
Sbjct: 175 MA 176
Score = 38.7 bits (86), Expect = 0.003
Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 13/152 (8%)
Frame = +3
Query: 198 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXK 377
++ R L++G L + + L F GE+ S+ V + TG+ G+ FI F + + +
Sbjct: 21 EEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAER 80
Query: 378 V--------MAAGEHTIN-NXKVXPXKAKARHG---KIFVGGLXXEISDDEIXNFFS-EF 518
M E T N K G IFVG L +++D + F +
Sbjct: 81 TLQTYNGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHY 140
Query: 519 GTILQVEMPFDKTKNQRKGFCFITFESEQXVN 614
++ ++ D + + KG+ F+ F E N
Sbjct: 141 SSVRGAKVVTDPSTGRSKGYGFVKFAEESERN 172
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 47.2 bits (107), Expect = 9e-06
Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 24/161 (14%)
Frame = +3
Query: 213 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK-APESIXKVMAA 389
++V L+ TTD +L++ FG YG+I S V D G+S+GF F+ F+ A ++ V +
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFENADDAARAVESL 89
Query: 390 GEHTINNXKVXPXKA-----------------------KARHGKIFVGGLXXEISDDEIX 500
H ++ + +A K + ++V L ISD+++
Sbjct: 90 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLK 149
Query: 501 NFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLL 623
FS FGT+ ++ D KG F+ F + + + +
Sbjct: 150 EIFSPFGTVTSSKVMRD-PNGTSKGSGFVAFATPEEATEAM 189
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/73 (31%), Positives = 37/73 (50%)
Frame = +3
Query: 168 DHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFI 347
+ N EA + L+V L +D++L++ F +G + S V DPN G S+G F+
Sbjct: 119 EQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPN-GTSKGSGFV 177
Query: 348 VFKAPESIXKVMA 386
F PE + M+
Sbjct: 178 AFATPEEATEAMS 190
Score = 35.5 bits (78), Expect = 0.031
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +3
Query: 435 KARHGKIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFES 599
K + ++V L +DD++ N F E+G I + D + + KGF F+ FE+
Sbjct: 25 KTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFEN 78
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 46.8 bits (106), Expect = 1e-05
Identities = 23/68 (33%), Positives = 35/68 (51%)
Frame = +3
Query: 156 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRG 335
G S+ + + + L+V GLS TDK+L HF G++ S + +P T SRG
Sbjct: 55 GRSRSRSRGRSEVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRG 114
Query: 336 FAFIVFKA 359
FAF+ +
Sbjct: 115 FAFVTMSS 122
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/58 (20%), Positives = 27/58 (46%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLK 626
++V GL ++D ++ F++ G + + + +GF F+T S + +K
Sbjct: 74 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIK 131
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/50 (42%), Positives = 29/50 (58%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKA 359
+++VG LS TTD LR+ F YG + V D T RSRGF F+ + +
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSS 53
Score = 36.3 bits (80), Expect = 0.018
Identities = 14/50 (28%), Positives = 29/50 (58%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFES 599
+++VG L +DD + FS +G ++ + D+ ++ +GF F+T+ S
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSS 53
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 46.4 bits (105), Expect = 2e-05
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Frame = +3
Query: 147 NGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTD----KELRDHFGAYGEIXSINVKTDP 314
N G ++ N R ++V G S + KELR HF GE+ ++V TD
Sbjct: 459 NERGTPRNSNPGRKGEGSQSRTIYVRGFSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDR 518
Query: 315 NTGRSRGFAFI 347
TG SRGFA+I
Sbjct: 519 ETGASRGFAYI 529
Score = 44.0 bits (99), Expect = 9e-05
Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 20/168 (11%)
Frame = +3
Query: 207 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMA 386
+ LF G LS++ ++ + F GE+ + + + + G +G+ I F +PE K +
Sbjct: 384 KTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSF-DDGSFKGYGHIEFASPEEAQKALE 442
Query: 387 AG---------EHTINNXKVXPXKAK-ARHGK------IFVGGLXXEISDDEI----XNF 506
+ N + P + R G+ I+V G + +DEI +
Sbjct: 443 MNGKLLLGRDVRLDLANERGTPRNSNPGRKGEGSQSRTIYVRGFSSSLGEDEIKKELRSH 502
Query: 507 FSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKTPKRTIGG 650
FS+ G + +V +P D+ +GF +I S ++ L+ IGG
Sbjct: 503 FSKCGEVTRVHVPTDRETGASRGFAYIDLTS--GFDEALQLSGSEIGG 548
Score = 33.1 bits (72), Expect = 0.16
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 1/92 (1%)
Frame = +3
Query: 354 KAPESIXKVMAAGEHTINNXKVXPXKAKARHGKIFVGGLXXEISDDEIXNFFSEFGTILQ 533
K + V A + K + + +F G L +I+ +I NFF E G ++
Sbjct: 353 KKDSDVEMVDAEQKSNAKQPKTPTNQTQGGSKTLFAGNLSYQIARSDIENFFKEAGEVVD 412
Query: 534 VEM-PFDKTKNQRKGFCFITFESEQXVNDLLK 626
V + FD KG+ I F S + L+
Sbjct: 413 VRLSSFD--DGSFKGYGHIEFASPEEAQKALE 442
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/49 (42%), Positives = 29/49 (59%)
Frame = +3
Query: 213 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKA 359
L+V GLS TDK+L HF G++ S + +P T SRGFAF+ +
Sbjct: 73 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSS 121
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/58 (20%), Positives = 27/58 (46%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLK 626
++V GL ++D ++ F++ G + + + +GF F+T S + +K
Sbjct: 73 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIK 130
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 45.6 bits (103), Expect = 3e-05
Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = +3
Query: 174 NSAEAPGRDDDRK----LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFA 341
N A A G+ +D +FVG LS E TD L F + V D TGRSRGF
Sbjct: 129 NWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFG 188
Query: 342 FIVFK 356
F+ F+
Sbjct: 189 FVSFR 193
Score = 45.2 bits (102), Expect = 4e-05
Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 10/149 (6%)
Frame = +3
Query: 189 PGRDDD--RKLFVGGLSWETTDKELRDHFGAYGEIXSIN-VKTDPNTGRSRGFAFIVFKA 359
PG D R ++VG + + T+ L++ F + G + S ++ D + S GF +
Sbjct: 51 PGFDPSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKS---SYGFVHYFDRR 107
Query: 360 PESIXKVMAAGEHTINNX-KVXPXKAKAR------HGKIFVGGLXXEISDDEIXNFFSEF 518
++ + G H KV A + H IFVG L E++D + FS F
Sbjct: 108 SAALAILSLNGRHLFGQPIKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVF 167
Query: 519 GTILQVEMPFDKTKNQRKGFCFITFESEQ 605
+ + +D+ + +GF F++F ++Q
Sbjct: 168 SSCSDARVMWDQKTGRSRGFGFVSFRNQQ 196
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 45.6 bits (103), Expect = 3e-05
Identities = 36/157 (22%), Positives = 71/157 (45%), Gaps = 8/157 (5%)
Frame = +3
Query: 153 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSR 332
G + +SAE R+ D ++VGGL + +++ L + F G + ++ V D T +
Sbjct: 10 GANLLGQHSAE---RNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQ 66
Query: 333 GFAFIVFKAPES-------IXKVMAAGEHTINNXKVXPXKAKARHGKIFVGGLXXEISDD 491
+ FI +++ E + + G+ N K+ +F+G L ++ +
Sbjct: 67 NYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEK 126
Query: 492 EIXNFFSEFGTIL-QVEMPFDKTKNQRKGFCFITFES 599
+ + FS FG I ++ D +GF FI+++S
Sbjct: 127 LLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDS 163
Score = 45.2 bits (102), Expect = 4e-05
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +3
Query: 177 SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSI-NVKTDPNTGRSRGFAFIVF 353
S + D LF+G L + +K L D F A+G I S + DP+TG SRGF FI +
Sbjct: 102 SQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISY 161
Query: 354 KAPES 368
+ E+
Sbjct: 162 DSFEA 166
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 4/55 (7%)
Frame = +3
Query: 201 DDRKLFVGG----LSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 353
D++K+FV G LS + LR+HF + GEI +++V D +TG S+G A++ F
Sbjct: 399 DEKKIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEF 453
Score = 44.0 bits (99), Expect = 9e-05
Identities = 38/163 (23%), Positives = 60/163 (36%), Gaps = 28/163 (17%)
Frame = +3
Query: 189 PGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPES 368
P + LF LS+ ++ + F GE+ + T+ + G RGF + F + E
Sbjct: 291 PAAGGSKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEE 350
Query: 369 IXKVMAAGEHTINNXKVX-----------------PXKAKARHG-------KIFVGGLXX 476
K + + ++ P R G KIFV G
Sbjct: 351 AQKALEFHGRPLLGREIRLDIAQERGERGERPAFTPQSGNFRSGGDGGDEKKIFVKGFDA 410
Query: 477 EISDDEIXN----FFSEFGTILQVEMPFDKTKNQRKGFCFITF 593
+S+D+I N FS G I V +P D+ KG ++ F
Sbjct: 411 SLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEF 453
Score = 33.5 bits (73), Expect = 0.12
Identities = 21/99 (21%), Positives = 38/99 (38%)
Frame = +3
Query: 354 KAPESIXKVMAAGEHTINNXKVXPXKAKARHGKIFVGGLXXEISDDEIXNFFSEFGTILQ 533
K S +++ A + + K A +F L I ++ NFF E G ++
Sbjct: 266 KKKSSDVEMVDAEKSSAKQPKTPSTPAAGGSKTLFAANLSFNIERADVENFFKEAGEVVD 325
Query: 534 VEMPFDKTKNQRKGFCFITFESEQXVNDLLKTPKRTIGG 650
V ++ +GF + F S + L+ R + G
Sbjct: 326 VRFSTNRDDGSFRGFGHVEFASSEEAQKALEFHGRPLLG 364
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 45.2 bits (102), Expect = 4e-05
Identities = 19/73 (26%), Positives = 40/73 (54%)
Frame = +3
Query: 201 DDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKV 380
D R +FVG + + T +E++ HF G + + + TD G+ +GFA++ F E++ +
Sbjct: 90 DARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTD-KFGQPKGFAYVEFVEVEAVQEA 148
Query: 381 MAAGEHTINNXKV 419
+ E ++ ++
Sbjct: 149 LQLNESELHGRQL 161
Score = 34.7 bits (76), Expect = 0.054
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKTP 632
+FVG + + +E+ F GT+ +V + DK Q KGF ++ F + V + L+
Sbjct: 94 VFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKF-GQPKGFAYVEFVEVEAVQEALQLN 152
Query: 633 KRTIGG 650
+ + G
Sbjct: 153 ESELHG 158
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/58 (37%), Positives = 31/58 (53%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVM 383
+LFV LS TTD+ LR F +G+I + D T R +GF FI F + + K +
Sbjct: 8 QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/66 (34%), Positives = 32/66 (48%)
Frame = +3
Query: 432 AKARHGKIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXV 611
AK ++FV L +D + FS FG I + + D + KGF FITF+SE
Sbjct: 2 AKRISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDA 61
Query: 612 NDLLKT 629
LK+
Sbjct: 62 RKALKS 67
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 45.2 bits (102), Expect = 4e-05
Identities = 19/57 (33%), Positives = 33/57 (57%)
Frame = +3
Query: 213 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVM 383
LFV G+S+ +T++ L F YG++ ++V D R +GFA++ F + E K +
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79
Score = 44.0 bits (99), Expect = 9e-05
Identities = 17/57 (29%), Positives = 35/57 (61%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLL 623
+FV G+ +++ + FS++G +L+V++ DK + + KGF ++TF S++ L
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 45.2 bits (102), Expect = 4e-05
Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 19/161 (11%)
Frame = +3
Query: 180 AEAPGRDDDR-KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 356
AE +++R KLFVG + T+ +L F + + +N+ + T RG F+
Sbjct: 2 AEETMENEERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCP 61
Query: 357 APESIXKVMAA--GEHTINNXKVXPXKAKARHG----------------KIFVGGLXXEI 482
E KV+ + + T+ P + K G K+FVG L +
Sbjct: 62 TREDADKVINSFHNKKTLPGAS-SPLQVKYADGELERLDVLDCSCNPEHKLFVGMLPKNV 120
Query: 483 SDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQ 605
S+ E+ + FSE+GTI +++ + KG F+ +ES++
Sbjct: 121 SETEVQSLFSEYGTIKDLQI-LRGSLQTSKGCLFLKYESKE 160
Score = 37.1 bits (82), Expect = 0.010
Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKT 629
K+FVG + +++ ++ F EF + +V + +KT +G CF+T + + + ++ +
Sbjct: 13 KLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINS 72
Query: 630 --PKRTIGG 650
K+T+ G
Sbjct: 73 FHNKKTLPG 81
Score = 33.1 bits (72), Expect = 0.16
Identities = 21/77 (27%), Positives = 37/77 (48%)
Frame = +3
Query: 213 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMAAG 392
LF+ + E D+EL F +G++ S V D TG S+ F FI + + + +
Sbjct: 341 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAI--- 397
Query: 393 EHTINNXKVXPXKAKAR 443
+T+N ++ K K +
Sbjct: 398 -NTMNGCQLSGKKLKVQ 413
Score = 32.3 bits (70), Expect = 0.29
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +3
Query: 204 DRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVM 383
+ KLFVG L ++ E++ F YG I + + + S+G F+ +++ E M
Sbjct: 108 EHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRG-SLQTSKGCLFLKYESKEQAVAAM 166
Query: 384 AA--GEHTINNXKV 419
A G H + V
Sbjct: 167 EALNGRHIMEGANV 180
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 44.8 bits (101), Expect = 5e-05
Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 15/161 (9%)
Frame = +3
Query: 165 QDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAF 344
Q H + + DD + L+VG L + L F GE+ S+ V + T +S G+ F
Sbjct: 94 QQHKAIDRGSGDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGF 153
Query: 345 IVFKAPESIXKVMAAGEHTINNXKVXP-----------XKAKARHG---KIFVGGLXXEI 482
+ F + + +V+ ++ P K +G +FVG L ++
Sbjct: 154 VEFLSRAAAEEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDV 213
Query: 483 SDDEIXNFFSE-FGTILQVEMPFDKTKNQRKGFCFITFESE 602
+D + FS+ + ++ ++ D + KG+ F+ F E
Sbjct: 214 TDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDE 254
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Frame = +3
Query: 378 VMAAGEHTINNXKVXPXKA--KARHGKIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFD 551
V+ AG H N ++ ++ + IFVGG+ ++ D+++ FS+FG ++ V++P
Sbjct: 296 VILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVG 355
Query: 552 KTKNQRKGFCFITFESEQXVNDLLKTPKRTIGG 650
KG F+ F + D +++ T+ G
Sbjct: 356 ------KGCGFVQFADRKSAEDAIESLNGTVIG 382
Score = 37.1 bits (82), Expect = 0.010
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +3
Query: 147 NGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTG 323
+G S + S ++ G + +FVGG+ + D++LR F +GE+ S+ + G
Sbjct: 302 HGSNGSMGYGS-QSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCG 359
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 44.4 bits (100), Expect = 7e-05
Identities = 44/171 (25%), Positives = 69/171 (40%), Gaps = 19/171 (11%)
Frame = +3
Query: 150 GGGDSQDHNSAEAPGRDDDR--KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTG 323
GG + S A D KL+V +S T+ ++R F YG + I + D TG
Sbjct: 89 GGSSLRKRRSQSATDNADGSIAKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTG 148
Query: 324 RSRGFAFIVFKAPESIXKVMAA-GEHTINNXKVXPXKA------KARHG----------K 452
+ FI +K E +AA E ++ P K + R G K
Sbjct: 149 ERAAYCFIKYKKVEEGNAAIAALTEQFTFPGEMLPVKVRFAEAERERIGFAPVQLPDNPK 208
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQ 605
++V L + + E+ FS +G I + M D K R G+ F+ F ++
Sbjct: 209 LYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICR-GYAFVQFSCKE 258
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 44.4 bits (100), Expect = 7e-05
Identities = 19/52 (36%), Positives = 31/52 (59%)
Frame = +3
Query: 216 FVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESI 371
FV GL +T +K+L D F +G + + D +TG+SR F F+ F+ +S+
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSM 61
Score = 43.2 bits (97), Expect = 2e-04
Identities = 16/56 (28%), Positives = 34/56 (60%)
Frame = +3
Query: 456 FVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLL 623
FV GL + + ++ + FS+FG ++ ++ +D+ + + F F+TFE E+ + D +
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAI 65
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 44.4 bits (100), Expect = 7e-05
Identities = 18/54 (33%), Positives = 33/54 (61%)
Frame = +3
Query: 207 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPES 368
R +FVG + ++ T+++LR+ G G + S + TD TG+ +G+ F +K E+
Sbjct: 9 RCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEET 62
Score = 31.1 bits (67), Expect = 0.66
Identities = 10/51 (19%), Positives = 27/51 (52%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQ 605
+FVG + + +++++ E G ++ + D+ + KG+ F ++ E+
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEE 61
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 44.4 bits (100), Expect = 7e-05
Identities = 30/75 (40%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Frame = +3
Query: 156 GDSQDHNSAEAPGRDDDRK----LFVGGLSWETTDKELRDHFGAYGEIXSI----NVKTD 311
G N A A G+ +D +FVG LS E TD L D F A+ S V D
Sbjct: 127 GQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWD 186
Query: 312 PNTGRSRGFAFIVFK 356
TGRSRGF F+ F+
Sbjct: 187 QKTGRSRGFGFVSFR 201
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 44.4 bits (100), Expect = 7e-05
Identities = 36/148 (24%), Positives = 63/148 (42%), Gaps = 9/148 (6%)
Frame = +3
Query: 189 PGRDDD--RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAP 362
PG D R ++VG + + T+ L++ F G + S + + S GF +
Sbjct: 46 PGFDPSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKS--SYGFVHYFDRRS 103
Query: 363 ESIXKVMAAGEHTINNX-KVXPXKAKAR------HGKIFVGGLXXEISDDEIXNFFSEFG 521
+ + G H KV A + H IFVG L E++D + FS +
Sbjct: 104 AGLAILSLNGRHLFGQPIKVNWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYP 163
Query: 522 TILQVEMPFDKTKNQRKGFCFITFESEQ 605
T + +D+ + +GF F++F ++Q
Sbjct: 164 TCSDARVMWDQKTGRSRGFGFVSFRNQQ 191
Score = 44.0 bits (99), Expect = 9e-05
Identities = 27/65 (41%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = +3
Query: 174 NSAEAPGRDDDRK----LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFA 341
N A A G+ +D +FVG LS E TD L F Y V D TGRSRGF
Sbjct: 124 NWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFG 183
Query: 342 FIVFK 356
F+ F+
Sbjct: 184 FVSFR 188
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +3
Query: 159 DSQDHNSAEAPGRDDD-RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRG 335
D +D + EAP + ++VG L+ E + +L HF + G V + R +G
Sbjct: 243 DGKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHSLG----AGVIEEVRVQRDKG 298
Query: 336 FAFI 347
F F+
Sbjct: 299 FGFV 302
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 44.0 bits (99), Expect = 9e-05
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Frame = +3
Query: 189 PGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPES 368
P D L V +++ TT +L F YG++ + + D TG SRGFAF+ +K +
Sbjct: 10 PDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDE 69
Query: 369 IXK--------VMAAGEHTINNXKVXPXKAKARHGKI 455
K V+ E T+ K P K G++
Sbjct: 70 AHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRV 106
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 44.0 bits (99), Expect = 9e-05
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Frame = +3
Query: 189 PGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPES 368
P D L V +++ TT +L F YG++ + + D TG SRGFAF+ +K +
Sbjct: 10 PDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDE 69
Query: 369 IXK--------VMAAGEHTINNXKVXPXKAKARHGKI 455
K V+ E T+ K P K G++
Sbjct: 70 AHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRV 106
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 44.0 bits (99), Expect = 9e-05
Identities = 20/61 (32%), Positives = 38/61 (62%)
Frame = +3
Query: 171 HNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIV 350
+N A G D + LFV L++E+++ +++ F +YG I +++ TD T + +G+AFI
Sbjct: 127 NNDPNATG-DPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIE 185
Query: 351 F 353
+
Sbjct: 186 Y 186
Score = 35.1 bits (77), Expect = 0.041
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITF 593
+FV L E S+ +I F +G I +V + D+ N+ KG+ FI +
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEY 186
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 44.0 bits (99), Expect = 9e-05
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = +3
Query: 213 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMAAG 392
LFVG LS TT+ LR+ YG I ++ + TG SRG+ F+ ++ + + +
Sbjct: 66 LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDA 125
Query: 393 EHTI 404
H++
Sbjct: 126 HHSL 129
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 44.0 bits (99), Expect = 9e-05
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Frame = +3
Query: 183 EAPGRDD-DRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK- 356
E DD +R LF+ L ++ T +E++ F +GE+ S+++ T R G AF+ FK
Sbjct: 552 ETQDNDDFERTLFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKFKT 611
Query: 357 APESIXKVMAA 389
A S+ + AA
Sbjct: 612 ADASVAAISAA 622
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKTP 632
+ V GL I++ ++ FSE G + + + +K ++ +GF F+ F ++ VN ++
Sbjct: 22 VCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELK 81
Query: 633 K-RTIGG 650
T+GG
Sbjct: 82 NGSTVGG 88
Score = 34.7 bits (76), Expect = 0.054
Identities = 17/77 (22%), Positives = 33/77 (42%)
Frame = +3
Query: 153 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSR 332
G + ++ E + V GL + T+ +L + F G + + T+ + R
Sbjct: 2 GKNKRERKDGEEKSPHAAATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHR 61
Query: 333 GFAFIVFKAPESIXKVM 383
GFAF+ F E + + +
Sbjct: 62 GFAFVKFALQEDVNRAI 78
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 353
KL + L ++ +++ F A G + + + + TG +GFAF+ F
Sbjct: 332 KLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKF 379
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 43.6 bits (98), Expect = 1e-04
Identities = 36/154 (23%), Positives = 65/154 (42%), Gaps = 25/154 (16%)
Frame = +3
Query: 168 DHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGA-YGEIXSINVKTDPNTGRSRGFAF 344
+ AE P + +FVG L+ + TD L + F A Y + V D TGRS+G+ F
Sbjct: 164 ERRQAEGP----EHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGF 219
Query: 345 IVF------------------------KAPESIXKVMAAGEHTINNXKVXPXKAKARHGK 452
+ F P + K + + N + ++ +
Sbjct: 220 VRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTT 279
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDK 554
IFVG + +++D++ + F +FG ++ V++P K
Sbjct: 280 IFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGK 313
Score = 43.2 bits (97), Expect = 2e-04
Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 16/168 (9%)
Frame = +3
Query: 150 GGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRS 329
GGG SQ+ SA + R L++G L + L + FG GE + V + G S
Sbjct: 66 GGGGSQNPGSA-----GEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYS 120
Query: 330 RGFAFIVF----KAPESIXKV----MAAGEHT--INNXKVXPXKAKARHGK---IFVGGL 470
G+ FI F A ++ M + E +N ++ + + G +FVG L
Sbjct: 121 EGYGFIEFVNHATAERNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDL 180
Query: 471 XXEISDDEIXNFFSE-FGTILQVEMPFDKTKNQRKGFCFITF--ESEQ 605
+++D + F + ++ ++ D+T + KG+ F+ F ESEQ
Sbjct: 181 APDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQ 228
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +3
Query: 213 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTG 323
+FVG + T+ +L+ FG +GE+ + + G
Sbjct: 280 IFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCG 316
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 42.7 bits (96), Expect = 2e-04
Identities = 27/108 (25%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Frame = +3
Query: 126 QLNGNAENGGGDSQDHNS--AEAPGRD--DDRKLFVGGLSWETTDKELRDHFGAYGEIXS 293
++ E G +QD S A G++ D R ++VG + + T +E++ HF G +
Sbjct: 58 EMQAKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNR 117
Query: 294 INVKTDPNTGRSRGFAFIVFKAPESIXKVMAAGEHTIN--NXKVXPXK 431
+ + D G+ +GFA++ F E++ + + E ++ KV P +
Sbjct: 118 VTILMD-KFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKR 164
Score = 33.5 bits (73), Expect = 0.12
Identities = 21/94 (22%), Positives = 41/94 (43%)
Frame = +3
Query: 369 IXKVMAAGEHTINNXKVXPXKAKARHGKIFVGGLXXEISDDEIXNFFSEFGTILQVEMPF 548
+ K M A + + K + ++VG + + +E+ F GT+ +V +
Sbjct: 63 VEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILM 122
Query: 549 DKTKNQRKGFCFITFESEQXVNDLLKTPKRTIGG 650
DK Q KGF ++ F + V + L+ + + G
Sbjct: 123 DKF-GQPKGFAYVEFVEVEAVQEALQLNESELHG 155
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 42.7 bits (96), Expect = 2e-04
Identities = 27/108 (25%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Frame = +3
Query: 126 QLNGNAENGGGDSQDHNS--AEAPGRD--DDRKLFVGGLSWETTDKELRDHFGAYGEIXS 293
++ E G +QD S A G++ D R ++VG + + T +E++ HF G +
Sbjct: 58 EMQAKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNR 117
Query: 294 INVKTDPNTGRSRGFAFIVFKAPESIXKVMAAGEHTIN--NXKVXPXK 431
+ + D G+ +GFA++ F E++ + + E ++ KV P +
Sbjct: 118 VTILMD-KFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKR 164
Score = 33.5 bits (73), Expect = 0.12
Identities = 21/94 (22%), Positives = 41/94 (43%)
Frame = +3
Query: 369 IXKVMAAGEHTINNXKVXPXKAKARHGKIFVGGLXXEISDDEIXNFFSEFGTILQVEMPF 548
+ K M A + + K + ++VG + + +E+ F GT+ +V +
Sbjct: 63 VEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILM 122
Query: 549 DKTKNQRKGFCFITFESEQXVNDLLKTPKRTIGG 650
DK Q KGF ++ F + V + L+ + + G
Sbjct: 123 DKF-GQPKGFAYVEFVEVEAVQEALQLNESELHG 155
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 42.7 bits (96), Expect = 2e-04
Identities = 17/55 (30%), Positives = 34/55 (61%)
Frame = +3
Query: 192 GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 356
G + ++FVGGL + T+ ++R+ ++G + ++ D TG S+G+AF V++
Sbjct: 354 GLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQ 408
Score = 32.3 bits (70), Expect = 0.29
Identities = 12/49 (24%), Positives = 24/49 (48%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFE 596
+IFVGGL ++ ++ FG + ++ D+ KG+ F ++
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQ 408
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 42.7 bits (96), Expect = 2e-04
Identities = 17/55 (30%), Positives = 34/55 (61%)
Frame = +3
Query: 192 GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 356
G + ++FVGGL + T+ ++R+ ++G + ++ D TG S+G+AF V++
Sbjct: 354 GLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQ 408
Score = 32.3 bits (70), Expect = 0.29
Identities = 12/49 (24%), Positives = 24/49 (48%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFE 596
+IFVGGL ++ ++ FG + ++ D+ KG+ F ++
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQ 408
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 42.7 bits (96), Expect = 2e-04
Identities = 17/55 (30%), Positives = 34/55 (61%)
Frame = +3
Query: 192 GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 356
G + ++FVGGL + T+ ++R+ ++G + ++ D TG S+G+AF V++
Sbjct: 354 GLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQ 408
Score = 32.3 bits (70), Expect = 0.29
Identities = 12/49 (24%), Positives = 24/49 (48%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFE 596
+IFVGGL ++ ++ FG + ++ D+ KG+ F ++
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQ 408
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 42.3 bits (95), Expect = 3e-04
Identities = 26/79 (32%), Positives = 41/79 (51%)
Frame = +3
Query: 162 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFA 341
+QDH SA + V GLS ++T+++L +G + + V + N+G SRGFA
Sbjct: 288 NQDHFSATPSAT-----VVVKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFA 342
Query: 342 FIVFKAPESIXKVMAAGEH 398
FI F ++ +M EH
Sbjct: 343 FIDFPTVDAARTMMDRIEH 361
Score = 38.3 bits (85), Expect = 0.004
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Frame = +3
Query: 213 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMAAG 392
L V GL + ++ LR F + I + + D T SRGFAF+ F + E K + A
Sbjct: 460 LVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEAT 519
Query: 393 EHTI--NNXKVXPXK-AKARHG 449
T N K+ AK+ HG
Sbjct: 520 NRTALERNGKILRVAYAKSVHG 541
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Frame = +3
Query: 162 SQDHNSAEAPGRDDDRK------LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTG 323
S+D S + GR ++ + V G+ ET ++++ + FG +GEI ++N+ D +G
Sbjct: 74 SRDFESLGSDGRPGPQRSVEGWIILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSG 133
Query: 324 RSRGFAFIVFKAPESIXKVMAA 389
+G+A I ++ E ++A
Sbjct: 134 YVKGYALIEYEKKEEAQSAISA 155
Score = 37.5 bits (83), Expect = 0.008
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQ 605
I V G+ E +++I N F +FG I + + D+ KG+ I +E ++
Sbjct: 97 ILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKE 147
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +3
Query: 207 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMA 386
R +FV + + T L HF +GE+ + TDP TG+ G A+I F E+ ++
Sbjct: 516 RTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENALS 575
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLL 623
IFV + + D + F++FG +L+ + D Q G +I F ++ + L
Sbjct: 518 IFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENAL 574
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/63 (31%), Positives = 34/63 (53%)
Frame = +3
Query: 195 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIX 374
R+D+ + V LS +T + +L + F +G + + V D TG SRGF F+ F + E
Sbjct: 209 RNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQ 268
Query: 375 KVM 383
+ +
Sbjct: 269 RAI 271
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = +3
Query: 459 VGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQ 605
V L + + ++ F FG + +V + D+ +GF F+ F S +
Sbjct: 217 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSRE 265
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/80 (25%), Positives = 40/80 (50%)
Frame = +3
Query: 213 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMAAG 392
L+V L + T+ ++ F +G++ + V D +T +SRG AF+++ + E K +
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118
Query: 393 EHTINNXKVXPXKAKARHGK 452
+ I N + A +G+
Sbjct: 119 DAKILNGRKLTVSIAADNGR 138
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/68 (29%), Positives = 36/68 (52%)
Frame = +3
Query: 162 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFA 341
SQ+ + E + RKLFV L W + ++ + FG G + ++ + + G++RGFA
Sbjct: 80 SQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKD-GKNRGFA 138
Query: 342 FIVFKAPE 365
F+ + E
Sbjct: 139 FVTMASGE 146
Score = 37.5 bits (83), Expect = 0.008
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +3
Query: 186 APGRDDDRKLFVGGLSWETTDKELRDHFGA--YGEIXSINVKTDPNTGRSRGFAFIVFKA 359
APG D KL+V L+W+ LR+ F A + + + V DP GRS G+ F+ F
Sbjct: 188 APG-DTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPE-GRSSGYGFVSFAT 245
Query: 360 PE 365
E
Sbjct: 246 RE 247
Score = 35.1 bits (77), Expect = 0.041
Identities = 22/75 (29%), Positives = 34/75 (45%)
Frame = +3
Query: 375 KVMAAGEHTINNXKVXPXKAKARHGKIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDK 554
K +A E T K + K+FV L +S ++I F + GT+ VE+ K
Sbjct: 71 KETSADEETSQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQK 130
Query: 555 TKNQRKGFCFITFES 599
+ +GF F+T S
Sbjct: 131 -DGKNRGFAFVTMAS 144
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 41.9 bits (94), Expect = 4e-04
Identities = 28/99 (28%), Positives = 46/99 (46%)
Frame = +3
Query: 156 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRG 335
G + + + E+P R L+VGGL+ ++++RD F A+GEI SI + + +
Sbjct: 211 GKAGEMGTLESPEDQSIRTLYVGGLNSRVLEQDIRDQFYAHGEIESIRILAE------KA 264
Query: 336 FAFIVFKAPESIXKVMAAGEHTINNXKVXPXKAKARHGK 452
AF+ + E K A E N V + K G+
Sbjct: 265 CAFVTYTTREGAEK---AAEELSNRLVVNGQRLKLTWGR 300
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/74 (29%), Positives = 40/74 (54%)
Frame = +3
Query: 156 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRG 335
G + + + E+P + + L+VGGL+ ++++RD F A+GEI SI + D +
Sbjct: 211 GKAGEMGTLESPDDESIKTLYVGGLNSRILEQDIRDQFYAHGEIESIRILAD------KA 264
Query: 336 FAFIVFKAPESIXK 377
AF+ + + E K
Sbjct: 265 CAFVTYTSREGAEK 278
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 41.5 bits (93), Expect = 5e-04
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKTP 632
+++G + +++++ FS G I ++ M DK GFCF+ F S + D +K
Sbjct: 36 VYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYI 95
Query: 633 KRTI 644
TI
Sbjct: 96 SGTI 99
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/51 (35%), Positives = 31/51 (60%)
Frame = +3
Query: 213 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPE 365
+++G +S+ TT+++L + F GEI I + D NT GF F++F + E
Sbjct: 36 VYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSRE 86
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 41.5 bits (93), Expect = 5e-04
Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 17/151 (11%)
Frame = +3
Query: 201 DDRKLFVGGLSWETTDKELRDHF--GAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIX 374
+++ ++VG L + L F G EI S+ V + N G S G+ F+ F++ +
Sbjct: 99 ENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVAD 158
Query: 375 KVMAAGEHTINNXKVXPXK---AKARHGK-----------IFVGGLXXEISDDEIXNFFS 512
KV+ T P + A G+ IFVG L ++SD+ + FS
Sbjct: 159 KVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFS 218
Query: 513 E-FGTILQVEMPFDKTKNQRKGFCFITFESE 602
E + ++ ++ D + KG+ F+ F E
Sbjct: 219 EKYPSVKAAKVVLDANTGRSKGYGFVRFGDE 249
Score = 41.1 bits (92), Expect = 6e-04
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +3
Query: 204 DRKLFVGGLSWETTDKELRDHFGA-YGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKV 380
D +FVG LS + +D L + F Y + + V D NTGRS+G+ F+ F K
Sbjct: 196 DLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 255
Query: 381 M 383
M
Sbjct: 256 M 256
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 41.1 bits (92), Expect = 6e-04
Identities = 45/176 (25%), Positives = 72/176 (40%), Gaps = 27/176 (15%)
Frame = +3
Query: 204 DRKLFVGGLSWETTDKELRDHFGA-YGEIXSINVKTDPNTGRSR--GF-----------A 341
D +FVG LS + +D L + F Y + + V D NTGRS+ GF A
Sbjct: 196 DLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 255
Query: 342 FIVFKAPESIXKVMAAGEHT-------------INNXKVXPXKAKARHGKIFVGGLXXEI 482
+ + M G T + N + + + IFVGGL +
Sbjct: 256 MTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSV 315
Query: 483 SDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKTPKRTIGG 650
+D+++ F+EFG I+ V++P KG F+ F + + L+ T+ G
Sbjct: 316 TDEDLKQPFNEFGEIVSVKIPVG------KGCGFVQFVNRPNAEEALEKLNGTVIG 365
Score = 36.7 bits (81), Expect = 0.013
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +3
Query: 117 TDNQLNGNAENGGGDSQDHNSAEAPGRDD-DRKLFVGGLSWETTDKELRDHFGAYGEIXS 293
T + NG + GG + + P D + +FVGGL TD++L+ F +GEI S
Sbjct: 275 TPRKTNGYQQQGG--YMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVS 332
Query: 294 INVKTDPNTG 323
+ + G
Sbjct: 333 VKIPVGKGCG 342
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 40.7 bits (91), Expect = 8e-04
Identities = 23/51 (45%), Positives = 32/51 (62%)
Frame = +3
Query: 213 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPE 365
L+VG L+ ETT+ +L + FG YG+I I V + SRGFAFI ++ E
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITVYS------SRGFAFIYYRHVE 64
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 40.7 bits (91), Expect = 8e-04
Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 12/170 (7%)
Frame = +3
Query: 177 SAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 353
S E P G R LFV ++ D EL F +GEI S+ +SRGF I +
Sbjct: 174 SVEHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYTAC-----KSRGFVMISY 228
Query: 354 KAPESIXKVMAAGEHTI----------NNXKVXPXKAKARHGKIFVGGLXXEISDDEIXN 503
+ M A ++T+ + K P + G + + + +S+DE+
Sbjct: 229 YDIRAAHAAMRALQNTLLRKRTLDIHFSIPKENPSEKDMNQGTLVIFNVDTTVSNDELLQ 288
Query: 504 FFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKTPKRT-IGG 650
F +G I ++ +T N R+ FI + + LK R+ IGG
Sbjct: 289 LFGAYGEIREIR----ETPN-RRFHRFIEYYDVRDAETALKALNRSEIGG 333
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 40.7 bits (91), Expect = 8e-04
Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 12/170 (7%)
Frame = +3
Query: 177 SAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 353
S E P G R LFV ++ D EL F +GEI S+ +SRGF I +
Sbjct: 187 SVEHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYTAC-----KSRGFVMISY 241
Query: 354 KAPESIXKVMAAGEHTI----------NNXKVXPXKAKARHGKIFVGGLXXEISDDEIXN 503
+ M A ++T+ + K P + G + + + +S+DE+
Sbjct: 242 YDIRAAHAAMRALQNTLLRKRTLDIHFSIPKENPSEKDMNQGTLVIFNVDTTVSNDELLQ 301
Query: 504 FFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKTPKRT-IGG 650
F +G I ++ +T N R+ FI + + LK R+ IGG
Sbjct: 302 LFGAYGEIREIR----ETPN-RRFHRFIEYYDVRDAETALKALNRSEIGG 346
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 40.7 bits (91), Expect = 8e-04
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 204 DRKLFVGGLSWETTDKELRDHF-GAYGEIXSINVKTDPNTGRSRGFAFIVF 353
D +FVG L+ + +D L + F G Y + V D NTGRS+G+ F+ F
Sbjct: 212 DLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRF 262
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/72 (26%), Positives = 39/72 (54%)
Frame = +3
Query: 435 KARHGKIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVN 614
++ + IFVGGL +++++++ FS+FG ++ V++P KG F+ F + Q
Sbjct: 323 ESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVG------KGCGFVQFANRQSAE 376
Query: 615 DLLKTPKRTIGG 650
+ + T+ G
Sbjct: 377 EAIGNLNGTVIG 388
Score = 37.1 bits (82), Expect = 0.010
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = +3
Query: 126 QLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVK 305
Q NG+ N + + G ++ +FVGGL + T+++L F +GE+ S+ +
Sbjct: 300 QQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIP 359
Query: 306 TDPNTG 323
G
Sbjct: 360 VGKGCG 365
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +3
Query: 213 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAP 362
LFVG L W TTD EL YG + + + +G+S+G+ + F P
Sbjct: 236 LFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDP 285
Score = 30.7 bits (66), Expect = 0.88
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITF 593
+FVG L +D E+ ++G + +V+ +K + KG+C + F
Sbjct: 236 LFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEF 282
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 39.9 bits (89), Expect = 0.001
Identities = 45/171 (26%), Positives = 70/171 (40%), Gaps = 26/171 (15%)
Frame = +3
Query: 213 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIX------ 374
++V L TD +L+ FG +GEI S V D G+SR F F+ F+ E+
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKD-GEGKSRRFGFVNFEKAEAAVTAIEKM 179
Query: 375 -------KVMAAGEHTINNXKVXPXKAK-----------ARHG-KIFVGGLXXEISDDEI 497
K + G + KAK R G ++V L + + ++
Sbjct: 180 NGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKL 239
Query: 498 XNFFSEFGTILQVEMPFDKTKNQRKGFCFITFE-SEQXVNDLLKTPKRTIG 647
FSEFGTI ++ + KG F+ F SE+ +LK + +G
Sbjct: 240 EELFSEFGTITSCKV-MVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVG 289
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 39.9 bits (89), Expect = 0.001
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDK 554
+FVGGL ++DD + N FS++G I+ V++P K
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGK 296
Score = 39.1 bits (87), Expect = 0.003
Identities = 41/163 (25%), Positives = 71/163 (43%), Gaps = 20/163 (12%)
Frame = +3
Query: 177 SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 356
S + D+ R L++G L + + L F GE+ S V + TG+ G+ FI F
Sbjct: 52 SVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFA 111
Query: 357 APESIXKVMAAGEHTINNXKV--XPXK------AKARHG---------KIFVGGLXXEIS 485
+ + +V+ T NN + P + A G IFVG L +++
Sbjct: 112 SHAAAERVL----QTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVT 167
Query: 486 DDEIXNFF-SEFGTILQVEMPFDKTKNQRKGFCFITF--ESEQ 605
D + F + + ++ ++ D+ + KG+ F+ F ESEQ
Sbjct: 168 DYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQ 210
Score = 33.5 bits (73), Expect = 0.12
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +3
Query: 150 GGGDSQDHNSAEAPGRDDDRK--LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTG 323
G DS ++A +D +FVGGL TD L++ F YGEI + + G
Sbjct: 240 GQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCG 299
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 39.9 bits (89), Expect = 0.001
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDK 554
+FVGGL ++DD + N FS++G I+ V++P K
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGK 296
Score = 39.1 bits (87), Expect = 0.003
Identities = 41/163 (25%), Positives = 71/163 (43%), Gaps = 20/163 (12%)
Frame = +3
Query: 177 SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 356
S + D+ R L++G L + + L F GE+ S V + TG+ G+ FI F
Sbjct: 52 SVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFA 111
Query: 357 APESIXKVMAAGEHTINNXKV--XPXK------AKARHG---------KIFVGGLXXEIS 485
+ + +V+ T NN + P + A G IFVG L +++
Sbjct: 112 SHAAAERVL----QTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVT 167
Query: 486 DDEIXNFF-SEFGTILQVEMPFDKTKNQRKGFCFITF--ESEQ 605
D + F + + ++ ++ D+ + KG+ F+ F ESEQ
Sbjct: 168 DYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQ 210
Score = 33.5 bits (73), Expect = 0.12
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +3
Query: 150 GGGDSQDHNSAEAPGRDDDRK--LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTG 323
G DS ++A +D +FVGGL TD L++ F YGEI + + G
Sbjct: 240 GQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCG 299
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = +3
Query: 183 EAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTD 311
E P + + L+VGGL+ ++++ DHF AYGE+ SI V +
Sbjct: 217 EPPEDESIKTLYVGGLNSRIFEQDIHDHFYAYGEMESIRVMAE 259
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/70 (27%), Positives = 36/70 (51%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMAA 389
K+ V L + T++ L+ F A+GEI + + D RS+G+AFI F + + +
Sbjct: 41 KIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIET 100
Query: 390 GEHTINNXKV 419
+ + N ++
Sbjct: 101 MDRRMYNGRM 110
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/63 (33%), Positives = 32/63 (50%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKT 629
KI V L S+D + FS FG I +V++ D+ + KG+ FI F S+ ++T
Sbjct: 41 KIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIET 100
Query: 630 PKR 638
R
Sbjct: 101 MDR 103
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +3
Query: 204 DRKLFVGGLSWETTDKELRDHFGA-YGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKV 380
D +FVG L+ + +D L + F Y + + V D NTGRS+G+ F+ F K
Sbjct: 198 DLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 257
Query: 381 M 383
M
Sbjct: 258 M 258
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/66 (33%), Positives = 35/66 (53%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKTP 632
IFVGGL ++D+++ FSEFG I+ V++P KG F+ F + + L+
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVG------KGCGFVQFVNRPNAEEALEKL 361
Query: 633 KRTIGG 650
T+ G
Sbjct: 362 NGTVIG 367
Score = 36.7 bits (81), Expect = 0.013
Identities = 20/69 (28%), Positives = 31/69 (44%)
Frame = +3
Query: 117 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSI 296
T + NG + GG + G + +FVGGL TD++L+ F +GEI S+
Sbjct: 277 TPRKTNGYQQQGGY-MPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSV 335
Query: 297 NVKTDPNTG 323
+ G
Sbjct: 336 KIPVGKGCG 344
Score = 33.9 bits (74), Expect = 0.094
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 15/122 (12%)
Frame = +3
Query: 282 EIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVM-----AAGEHTINNXKVX------PX 428
EI S+ V + + G S G+ F+ F++ + KV+ A +T ++
Sbjct: 130 EIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQEFNGAPMPNTDQPFRLNWASFSTGE 189
Query: 429 KAKARHG---KIFVGGLXXEISDDEIXNFFSE-FGTILQVEMPFDKTKNQRKGFCFITFE 596
K +G IFVG L ++SD + FSE + ++ ++ D + KG+ F+ F
Sbjct: 190 KRLENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFG 249
Query: 597 SE 602
E
Sbjct: 250 DE 251
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITF 593
++VGGL E+++ + F FG I V+ P D+ + + F F+TF
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTF 61
Score = 33.9 bits (74), Expect = 0.094
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +3
Query: 213 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVM 383
L+VGGL+ E + L F +G+I + D + R F F+ F E M
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAM 71
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = +3
Query: 156 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRG 335
G + ++ R D+ + V LS +T +L + F +G + +V D T SRG
Sbjct: 157 GADRKAGGSDMRSRHDENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRG 216
Query: 336 FAFIVFKAPESIXKVM 383
F F+ F + E + +
Sbjct: 217 FGFVSFVSREDAQRAI 232
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +3
Query: 435 KARHGK--IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQ 605
++RH + + V L + ++ F FG + + + D+ + +GF F++F S +
Sbjct: 168 RSRHDENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSRE 226
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 39.1 bits (87), Expect = 0.003
Identities = 14/58 (24%), Positives = 33/58 (56%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLK 626
+++G + +SD + + + G ++ + +P DK ++ KGF F +E+E+ + +K
Sbjct: 9 VYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYAVK 66
Score = 31.1 bits (67), Expect = 0.66
Identities = 12/51 (23%), Positives = 26/51 (50%)
Frame = +3
Query: 213 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPE 365
+++G + +D+ L D G + +++ D T + +GFAF ++ E
Sbjct: 9 VYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEE 59
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/77 (23%), Positives = 34/77 (44%)
Frame = +3
Query: 384 AAGEHTINNXKVXPXKAKARHGKIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKN 563
A+ + + P + +++G L + DD + N FS FG I+ ++ D+
Sbjct: 459 ASAHPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTG 518
Query: 564 QRKGFCFITFESEQXVN 614
KG+ F+ + Q N
Sbjct: 519 LSKGYGFVKYADVQMAN 535
Score = 35.1 bits (77), Expect = 0.041
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +3
Query: 138 NAENGGGDSQDHNSA--EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKT 308
NA NG S + P ++ D+ L++G L D L + F ++GEI V
Sbjct: 454 NAGNGASAHPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIK 513
Query: 309 DPNTGRSRGFAFIVF 353
D TG S+G+ F+ +
Sbjct: 514 DRVTGLSKGYGFVKY 528
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/77 (23%), Positives = 34/77 (44%)
Frame = +3
Query: 384 AAGEHTINNXKVXPXKAKARHGKIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKN 563
A+ + + P + +++G L + DD + N FS FG I+ ++ D+
Sbjct: 459 ASAHPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTG 518
Query: 564 QRKGFCFITFESEQXVN 614
KG+ F+ + Q N
Sbjct: 519 LSKGYGFVKYADVQMAN 535
Score = 35.1 bits (77), Expect = 0.041
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +3
Query: 138 NAENGGGDSQDHNSA--EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKT 308
NA NG S + P ++ D+ L++G L D L + F ++GEI V
Sbjct: 454 NAGNGASAHPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIK 513
Query: 309 DPNTGRSRGFAFIVF 353
D TG S+G+ F+ +
Sbjct: 514 DRVTGLSKGYGFVKY 528
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/52 (28%), Positives = 30/52 (57%)
Frame = +3
Query: 198 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 353
DD ++VGGL ++ T++ +R F YG + ++ + D + R + + F+ F
Sbjct: 4 DDGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSV-RGKCYGFVTF 54
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/81 (27%), Positives = 36/81 (44%)
Frame = +3
Query: 162 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFA 341
S+DH S+ G L + L + +LRD F +G + I + + TG RGF
Sbjct: 38 SRDHESSGPSG------LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFG 91
Query: 342 FIVFKAPESIXKVMAAGEHTI 404
F+ ++ E + M H +
Sbjct: 92 FVKYRYAEDAAEAMKRMNHKV 112
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 38.7 bits (86), Expect = 0.003
Identities = 34/150 (22%), Positives = 63/150 (42%), Gaps = 11/150 (7%)
Frame = +3
Query: 183 EAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAP 362
E P D + V LS T ++ F ++ S+ + + + G+ G+ F+ F +
Sbjct: 150 ETPPDFVDEVVIVSNLSPLTKIAHIKGFFNGVAQVVSVRLVVN-HEGKHVGYGFVEFASA 208
Query: 363 ESIXKVMAA--GEHTINNXKVXPXKAKARHG---------KIFVGGLXXEISDDEIXNFF 509
K + GE+ ++N K+ K G +FV L I +I NFF
Sbjct: 209 YGANKALEEKNGEY-LHNHKILLMKGHESPGFAEEAAITKTLFVANLRDSIQISDIINFF 267
Query: 510 SEFGTILQVEMPFDKTKNQRKGFCFITFES 599
+ G ++ V + ++ + G+ F+ F S
Sbjct: 268 KDVGEVVHVRL-IVNSQGKHAGWGFVEFAS 296
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +3
Query: 213 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 353
LFVG L W TTD E+ YG + I + +G+S+G+ + F
Sbjct: 204 LFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEF 250
Score = 33.5 bits (73), Expect = 0.12
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITF 593
+FVG L +D EI + S++G + +++ ++ + KG+C + F
Sbjct: 204 LFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEF 250
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQ 605
+++G + + EI FFS+FGT+ +V + +K + K F FI FE +
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPE 112
Score = 37.5 bits (83), Expect = 0.008
Identities = 37/175 (21%), Positives = 68/175 (38%), Gaps = 13/175 (7%)
Frame = +3
Query: 153 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSR 332
GG ++ P ++ L++G + + E+ F +G + + V + TG+S+
Sbjct: 42 GGPARKAPVTTPPLQNKATVLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSK 101
Query: 333 GFAFIVFKAPESIXKVMAAG-------EHTINNXKVXPXKAKARHGKIF------VGGLX 473
F FI F+ PE + ++ A EH + + P K + F V +
Sbjct: 102 HFGFIQFEDPE-VAEIAAGAMNDYLLMEHMLKVHVIEPENVKPNLWRGFKCNFKPVDSVQ 160
Query: 474 XEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKTPKR 638
E E +LQ + D+ + +R I +E + V + PKR
Sbjct: 161 IERRQLNKERTLEEHRKMLQKIVKKDQKRRKRIEAAGIEYECPELVGNTQPVPKR 215
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 37.5 bits (83), Expect = 0.008
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +3
Query: 162 SQDHNSAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGF 338
S+DH S + G + KL++ L + ++++++ F GE+ V D +GRS+G
Sbjct: 70 SEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGT 128
Query: 339 AFIVF 353
A +V+
Sbjct: 129 AEVVY 133
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 37.5 bits (83), Expect = 0.008
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +3
Query: 162 SQDHNSAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGF 338
S+DH S + G + KL++ L + ++++++ F GE+ V D +GRS+G
Sbjct: 6 SEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGT 64
Query: 339 AFIVF 353
A +V+
Sbjct: 65 AEVVY 69
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 37.5 bits (83), Expect = 0.008
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +3
Query: 162 SQDHNSAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGF 338
S+DH S + G + KL++ L + ++++++ F GE+ V D +GRS+G
Sbjct: 72 SEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGT 130
Query: 339 AFIVF 353
A +V+
Sbjct: 131 AEVVY 135
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/97 (18%), Positives = 42/97 (43%)
Frame = +3
Query: 303 KTDPNTGRSRGFAFIVFKAPESIXKVMAAGEHTINNXKVXPXKAKARHGKIFVGGLXXEI 482
+ +PN +R + KAPES + + ++ K+++ L +
Sbjct: 40 RNNPNRKSTRSAPYQSAKAPESTWGHDMFSDRSEDHRSGRSSAGIETGTKLYISNLDYGV 99
Query: 483 SDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITF 593
+++I F+E G + + + FD++ + KG + +
Sbjct: 100 MNEDIKELFAEVGELKRYTVHFDRS-GRSKGTAEVVY 135
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 37.1 bits (82), Expect = 0.010
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = +3
Query: 207 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 356
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F+
Sbjct: 7 RTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPP---RPPGYAFVEFE 53
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/59 (28%), Positives = 25/59 (42%)
Frame = +3
Query: 135 GNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTD 311
G GGGD P R + ++ V GL + ++L+DH GE+ V D
Sbjct: 98 GRGGRGGGDGGGRE--RGPSRRSEYRVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRD 154
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 37.1 bits (82), Expect = 0.010
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = +3
Query: 207 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 356
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F+
Sbjct: 7 RTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPP---RPPGYAFVEFE 53
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/59 (28%), Positives = 25/59 (42%)
Frame = +3
Query: 135 GNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTD 311
G GGGD P R + ++ V GL + ++L+DH GE+ V D
Sbjct: 98 GRGGRGGGDGGGRE--RGPSRRSEYRVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRD 154
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 37.1 bits (82), Expect = 0.010
Identities = 21/73 (28%), Positives = 33/73 (45%)
Frame = +3
Query: 153 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSR 332
G +D +E P ++D +LF G L E D L F + V D TG+++
Sbjct: 121 GQSWEDPTLSEWP--ENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTK 178
Query: 333 GFAFIVFKAPESI 371
G+ F+ F P +
Sbjct: 179 GYGFVSFLNPADL 191
Score = 35.9 bits (79), Expect = 0.023
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITF 593
++F G L E++DD + F+ F T ++ DK + KG+ F++F
Sbjct: 138 RLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSF 185
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 36.7 bits (81), Expect = 0.013
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +3
Query: 183 EAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAP 362
E P + LFV LS +T ++ D F GE+ SI + + + G+ G+ F+ F +
Sbjct: 236 ERPPNSVEEVLFVANLSPQTKISDIFDFFNCVGEVVSIRLMVN-HEGKHVGYGFVEFASA 294
Query: 363 ESIXKVM 383
+ K +
Sbjct: 295 DETKKAL 301
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = +3
Query: 429 KAKARHGKIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQX 608
+A R +FV L E I +FF + G +++V++ K + G F+ F S
Sbjct: 121 EAAVREKTLFVANLPYETKIPNIIDFFKKVGEVVRVQL-IVNLKGKLVGCGFVEFASVNE 179
Query: 609 VNDLLK 626
+ L+
Sbjct: 180 AEEALQ 185
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 36.7 bits (81), Expect = 0.013
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +3
Query: 207 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 353
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP---RPPGYAFVEF 52
Score = 31.1 bits (67), Expect = 0.66
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = +3
Query: 117 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSI 296
T NG GGG + + P R + ++ V GL + ++L+DH G++
Sbjct: 90 TRGSFNGGGR-GGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFS 148
Query: 297 NVKTD 311
V D
Sbjct: 149 QVYRD 153
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 36.7 bits (81), Expect = 0.013
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +3
Query: 207 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 353
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP---RPPGYAFVEF 52
Score = 31.1 bits (67), Expect = 0.66
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = +3
Query: 117 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSI 296
T NG GGG + + P R + ++ V GL + ++L+DH G++
Sbjct: 90 TRGSFNGGGR-GGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFS 148
Query: 297 NVKTD 311
V D
Sbjct: 149 QVYRD 153
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 36.7 bits (81), Expect = 0.013
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +3
Query: 207 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 353
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP---RPPGYAFVEF 52
Score = 31.1 bits (67), Expect = 0.66
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = +3
Query: 117 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSI 296
T NG GGG + + P R + ++ V GL + ++L+DH G++
Sbjct: 90 TRGSFNGGGR-GGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFS 148
Query: 297 NVKTD 311
V D
Sbjct: 149 QVYRD 153
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 36.3 bits (80), Expect = 0.018
Identities = 43/185 (23%), Positives = 74/185 (40%), Gaps = 40/185 (21%)
Frame = +3
Query: 192 GRDDDRKL----FVGGLSWETTDKELRDHFGAYGEIXSINVKTDP--------------- 314
G DD+ KL FVG L + K + F +GE+ S+ +++ P
Sbjct: 162 GFDDESKLLRTVFVGNLPLKVKKKVILKEFSKFGEVESVRIRSVPIVDSKRTRKGAIMLK 221
Query: 315 --NTGRSRGFAFIVFKAPESIXKVMA------AGEHTINNXKVXPXKAKARHG------- 449
N S A++VF+ +S +A G H + P K + H
Sbjct: 222 QINEKASSVHAYVVFETEQSAAASLAHNMSLIDGNHVRVDRACPPRKKQKGHDDTHLYDP 281
Query: 450 --KIFVGGLXXEISDDEIXNFFSE----FGTILQVEMPFDKTKNQRKGFCFITFESEQXV 611
+F+G L ++ D+E+ F+ +I V + D N KG ++ F++ +
Sbjct: 282 KRTVFMGNLPFDVKDEEVYQLFTGKSNLENSIEAVRVIRDPHLNIGKGIAYVLFKTREAA 341
Query: 612 NDLLK 626
N +LK
Sbjct: 342 NLVLK 346
Score = 35.5 bits (78), Expect = 0.031
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Frame = +3
Query: 198 DDDRKLFVGGLSWETTDKELRDHF----GAYGEIXSINVKTDPNTGRSRGFAFIVFKAPE 365
D R +F+G L ++ D+E+ F I ++ V DP+ +G A+++FK E
Sbjct: 280 DPKRTVFMGNLPFDVKDEEVYQLFTGKSNLENSIEAVRVIRDPHLNIGKGIAYVLFKTRE 339
Query: 366 SIXKVMAAG 392
+ V+ G
Sbjct: 340 AANLVLKKG 348
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 35.9 bits (79), Expect = 0.023
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 444 HGKIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITF 593
HG + V + + +E+ F FG + V +P D Q +GF F+ F
Sbjct: 46 HGSLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEF 95
Score = 34.7 bits (76), Expect = 0.054
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 213 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 353
L V + + +ELR+ F +G + + + D +G+ RGFAF+ F
Sbjct: 49 LLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEF 95
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 35.5 bits (78), Expect = 0.031
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +3
Query: 183 EAPGRDDDRKLFVGGLSWETTDKELRDHFGA-YGEIXSINVKTDPNTGRSRGFAFIVFK 356
E P LFV L++E K L++ F A G + S V N RS G+ F+ FK
Sbjct: 181 ETPSPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFK 239
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 35.5 bits (78), Expect = 0.031
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = +3
Query: 204 DRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAP 362
+R ++VG L + E+ D F YG I I++K P R G+AF+ F+ P
Sbjct: 6 NRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPP---RPPGYAFVEFEDP 55
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +3
Query: 162 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTD 311
S ++++ AP R D ++ V GL + ++L+DH G++ V D
Sbjct: 94 SSSYSASRAPSRRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSEVFPD 143
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 35.1 bits (77), Expect = 0.041
Identities = 21/65 (32%), Positives = 31/65 (47%)
Frame = +3
Query: 225 GLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMAAGEHTI 404
GLS TTD+ LR F + + D T R +GF FI F++ + K + A I
Sbjct: 77 GLSAYTTDQSLRQLFAPFARLIK-----DQQTQRPKGFGFITFESEDDAQKALKALNGKI 131
Query: 405 NNXKV 419
N ++
Sbjct: 132 VNGRL 136
Score = 31.9 bits (69), Expect = 0.38
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +3
Query: 465 GLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLK 626
GL +D + F+ F +++ D+ + KGF FITFESE LK
Sbjct: 77 GLSAYTTDQSLRQLFAPFARLIK-----DQQTQRPKGFGFITFESEDDAQKALK 125
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 35.1 bits (77), Expect = 0.041
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMAA 389
+++VG L T++EL D F A+G + S+ V P G+AF+ F+ P + A
Sbjct: 3 RVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRP-----PGYAFLDFEDPRDARDAIRA 57
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/59 (22%), Positives = 29/59 (49%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLK 626
+++VG L +++ E+ + F FG + V + + G+ F+ FE + D ++
Sbjct: 3 RVYVGNLDPRVTERELEDEFRAFGVVRSVWV-----ARRPPGYAFLDFEDPRDARDAIR 56
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 35.1 bits (77), Expect = 0.041
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Frame = +3
Query: 117 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETT-DKELRDHFGAYGEIXS 293
T ++ G+ +GGG S+ +S+ P + LFV + T ++L HF YG+I +
Sbjct: 31 TKSERGGDKRSGGG-SRRSSSSMRPSKT----LFVINFDADNTRTRDLEKHFEPYGKIVN 85
Query: 294 INVKTDPNTGRSRGFAFIVFKAPESIXKVMAAGEHT 401
+ ++ R FAFI ++A E + + A ++
Sbjct: 86 VRIR--------RNFAFIQYEAQEDATRALDASNNS 113
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 35.1 bits (77), Expect = 0.041
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Frame = +3
Query: 117 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETT-DKELRDHFGAYGEIXS 293
T ++ G+ +GGG S+ +S+ P + LFV + T ++L HF YG+I +
Sbjct: 72 TKSERGGDKRSGGG-SRRSSSSMRPSKT----LFVINFDADNTRTRDLEKHFEPYGKIVN 126
Query: 294 INVKTDPNTGRSRGFAFIVFKAPESIXKVMAAGEHT 401
+ ++ R FAFI ++A E + + A ++
Sbjct: 127 VRIR--------RNFAFIQYEAQEDATRALDASNNS 154
>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
GI:1279563 from [Medicago sativa]
Length = 335
Score = 35.1 bits (77), Expect = 0.041
Identities = 21/74 (28%), Positives = 32/74 (43%)
Frame = +3
Query: 216 FVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMAAGE 395
F L + L +F ++GEI + V TG S G+A+I K E K + G
Sbjct: 241 FDASLPVDDIKSALSKYFSSFGEITRVFVPPSHGTGGSLGYAYIDLK--EGAEKALELGR 298
Query: 396 HTINNXKVXPXKAK 437
H + + KA+
Sbjct: 299 HDVGGWDLVVGKAE 312
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 34.7 bits (76), Expect = 0.054
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQ 605
+FV G +S+ + FSEFG + V++ ++ Q G+ ++ F S++
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKE 110
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 34.7 bits (76), Expect = 0.054
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQ 605
+FV G +S+ + FSEFG + V++ ++ Q G+ ++ F S++
Sbjct: 79 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKE 129
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 34.7 bits (76), Expect = 0.054
Identities = 14/49 (28%), Positives = 30/49 (61%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFES 599
+++ L ++S++ + FS+FG +++ + D + + +GF FI FES
Sbjct: 19 LYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKD-FRGESRGFAFIEFES 66
Score = 33.5 bits (73), Expect = 0.12
Identities = 20/75 (26%), Positives = 38/75 (50%)
Frame = +3
Query: 159 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGF 338
+ +H S+ P + L++ L + +++ L F +G++ +V G SRGF
Sbjct: 3 NDDNHGSSSCPRKFTS--LYIANLDAQVSEEMLFLMFSDFGKVIR-SVLAKDFRGESRGF 59
Query: 339 AFIVFKAPESIXKVM 383
AFI F++ +S + M
Sbjct: 60 AFIEFESADSAGRAM 74
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 34.3 bits (75), Expect = 0.071
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +3
Query: 423 PXKAKARHGKIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRK-GFCFITFES 599
P + + GKIFVG L I E FF +FG I V + + ++ GF FI + +
Sbjct: 157 PQQEFRQEGKIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIYAA 216
Query: 600 EQ 605
E+
Sbjct: 217 EK 218
Score = 32.3 bits (70), Expect = 0.29
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXS-INVKTDPNTGRSRGFAFIVFKAPESIXKVM 383
K+FVG L E + F +G I + I +K ++ GF FI++ A +S K +
Sbjct: 166 KIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIYAAEKSAMKAV 224
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 33.9 bits (74), Expect = 0.094
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 213 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKA 359
L V LS + L++ FG +GE+ + + D RG ++ FKA
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKA 148
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 33.9 bits (74), Expect = 0.094
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 213 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKA 359
L V LS + L++ FG +GE+ + + D RG ++ FKA
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKA 148
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 33.5 bits (73), Expect = 0.12
Identities = 16/66 (24%), Positives = 31/66 (46%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKTP 632
++VG + ++ FS+FG + +V+M + G+ F+ FE E+ D ++
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDM--------KSGYAFVYFEDERDAEDAIRRT 55
Query: 633 KRTIGG 650
T G
Sbjct: 56 DNTTFG 61
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 33.5 bits (73), Expect = 0.12
Identities = 37/144 (25%), Positives = 56/144 (38%), Gaps = 11/144 (7%)
Frame = +3
Query: 138 NAENGGGD-SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDP 314
N NG G + +H E P R LFV ++ D EL F YG+I +T
Sbjct: 148 NIPNGAGTVAGEHPYGEHPSRT----LFVRNINSNVEDSELTALFEQYGDI-----RTLY 198
Query: 315 NTGRSRGFAFIVFKAPESIXKVMAAGEHT----------INNXKVXPXKAKARHGKIFVG 464
T + RGF I + S M + ++ + K P + G + V
Sbjct: 199 TTCKHRGFVMISYYDIRSARMAMRSLQNKPLRRRKLDIHFSIPKDNPSEKDMNQGTLVVF 258
Query: 465 GLXXEISDDEIXNFFSEFGTILQV 536
L IS+D++ F G I ++
Sbjct: 259 NLDPSISNDDLHGIFGAHGEIKEI 282
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 33.5 bits (73), Expect = 0.12
Identities = 37/144 (25%), Positives = 56/144 (38%), Gaps = 11/144 (7%)
Frame = +3
Query: 138 NAENGGGD-SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDP 314
N NG G + +H E P R LFV ++ D EL F YG+I +T
Sbjct: 148 NIPNGAGTVAGEHPYGEHPSRT----LFVRNINSNVEDSELTALFEQYGDI-----RTLY 198
Query: 315 NTGRSRGFAFIVFKAPESIXKVMAAGEHT----------INNXKVXPXKAKARHGKIFVG 464
T + RGF I + S M + ++ + K P + G + V
Sbjct: 199 TTCKHRGFVMISYYDIRSARMAMRSLQNKPLRRRKLDIHFSIPKDNPSEKDMNQGTLVVF 258
Query: 465 GLXXEISDDEIXNFFSEFGTILQV 536
L IS+D++ F G I ++
Sbjct: 259 NLDPSISNDDLHGIFGAHGEIKEI 282
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 33.1 bits (72), Expect = 0.16
Identities = 21/59 (35%), Positives = 30/59 (50%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLK 626
++ VGGL + D++ FS GT+ VE F +TK + F +I F S N L K
Sbjct: 11 RLHVGGLGESVGRDDLLKIFSPMGTVDAVE--FVRTKG--RSFAYIDF-SPSSTNSLTK 64
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 33.1 bits (72), Expect = 0.16
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +3
Query: 231 SWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPE 365
S T++ LRD F GEI + +K + G+SR FA+I F+ +
Sbjct: 11 SKHVTEERLRDVFSRKGEIADVKLKR-KSDGKSRQFAYIGFRTEQ 54
>At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing
protein contains Pfam profile:PF00076 RNA recognition
motif
Length = 602
Score = 32.7 bits (71), Expect = 0.22
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +3
Query: 483 SDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLL 623
+D+++ N+F FG + V +P+ Q++ F F+TF + V +L
Sbjct: 331 TDEDVSNYFGNFGPVQDVRIPY----QQKRMFGFVTFLHSETVRIIL 373
Score = 31.9 bits (69), Expect = 0.38
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = +3
Query: 243 TDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMAAGE-HTINNXK- 416
TD+++ ++FG +G + + + + R F F+ F E++ ++A G H I + +
Sbjct: 331 TDEDVSNYFGNFGPVQDVRIPYQ----QKRMFGFVTFLHSETVRIILARGNPHFICDSRV 386
Query: 417 -VXPXKAKAR 443
V P K K R
Sbjct: 387 LVKPYKEKGR 396
>At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing
protein low similarity to poly(A) binding protein II
from [Xenopus laevis] GI:11527140, [Mus musculus]
GI:2351846, [Bos taurus] GI:1051125; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) domain
Length = 537
Score = 32.7 bits (71), Expect = 0.22
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 279 GEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMA 386
G + ++ V TDP T +G AF+ F ES+ K +A
Sbjct: 469 GAVQNVIVVTDPVTRHPKGTAFVTFATKESVGKAVA 504
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 31.9 bits (69), Expect = 0.38
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +3
Query: 144 ENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETT-DKELRDHFGAYGEIXSINVKTDPNT 320
+ GG + + G + LFV + T ++L HF YG+I ++ ++
Sbjct: 75 DRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIR----- 129
Query: 321 GRSRGFAFIVFKAPESIXKVMAA 389
R FAFI ++A E + + A
Sbjct: 130 ---RNFAFIQYEAQEDATRALDA 149
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 31.9 bits (69), Expect = 0.38
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +3
Query: 144 ENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETT-DKELRDHFGAYGEIXSINVKTDPNT 320
+ GG + + G + LFV + T ++L HF YG+I ++ ++
Sbjct: 75 DRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIR----- 129
Query: 321 GRSRGFAFIVFKAPESIXKVMAA 389
R FAFI ++A E + + A
Sbjct: 130 ---RNFAFIQYEAQEDATRALDA 149
>At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 399
Score = 31.9 bits (69), Expect = 0.38
Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Frame = +3
Query: 246 DKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMAAGE-HTINNXK-- 416
++++ D+F +G + + + + R F F+ F PE++ ++A G H + + +
Sbjct: 169 EEDVSDYFSTFGPVQDVRIPYQ----QKRMFGFVTFMYPETVKSILAKGNPHFVCHSRVL 224
Query: 417 VXPXKAKAR 443
V P K K +
Sbjct: 225 VKPYKEKGK 233
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 31.9 bits (69), Expect = 0.38
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 356
+++VG L T++EL D F ++G I S+ V P G+AF+ F+
Sbjct: 3 RVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRP-----PGYAFLDFE 46
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLK 626
+++VG L +++ E+ + F FG I V + + G+ F+ FE + D ++
Sbjct: 3 RVYVGNLDPRVTERELEDEFRSFGVIRSVWV-----ARRPPGYAFLDFEDSRDARDAIR 56
>At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 552
Score = 31.1 bits (67), Expect = 0.66
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +3
Query: 486 DDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLL 623
D+++ +FS FGT+ V +P+ Q++ F F++F + V +L
Sbjct: 273 DEDVATYFSLFGTVQDVRIPY----QQKRMFGFVSFAHPETVKVVL 314
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +3
Query: 246 DKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMAAGE-HTINNXK-- 416
D+++ +F +G + + + + R F F+ F PE++ V+A G H I + +
Sbjct: 273 DEDVATYFSLFGTVQDVRIPYQ----QKRMFGFVSFAHPETVKVVLARGNPHFICDSRVL 328
Query: 417 VXPXKAKAR 443
V P K K +
Sbjct: 329 VKPYKEKGK 337
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 31.1 bits (67), Expect = 0.66
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +3
Query: 207 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 356
R ++VG L + + E+ D F YG I I +K P R + F+ F+
Sbjct: 7 RSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPP---RPPCYCFVEFE 53
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 31.1 bits (67), Expect = 0.66
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQ 605
+FV L D+++ FS FGT++ ++ D + FI FE+++
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKE 295
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 31.1 bits (67), Expect = 0.66
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 353
+++VG L T++EL D F A+G + ++ V P G+AF+ F
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRP-----PGYAFLEF 45
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/66 (22%), Positives = 31/66 (46%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKT 629
+++VG L +++ E+ + F FG + V + + G+ F+ F+ E+ D +
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWV-----ARRPPGYAFLEFDDERDALDAISA 57
Query: 630 PKRTIG 647
R G
Sbjct: 58 LDRKNG 63
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 31.1 bits (67), Expect = 0.66
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +3
Query: 210 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 353
+++VG L T++EL D F A+G + ++ V P G+AF+ F
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRP-----PGYAFLEF 45
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/66 (22%), Positives = 31/66 (46%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKT 629
+++VG L +++ E+ + F FG + V + + G+ F+ F+ E+ D +
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWV-----ARRPPGYAFLEFDDERDALDAISA 57
Query: 630 PKRTIG 647
R G
Sbjct: 58 LDRKNG 63
>At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 130
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRK 572
+FV G +S+ + FSEFG + E F +KN RK
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFGQVTN-EHYFSGSKNHRK 98
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +3
Query: 207 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 356
R +FVG +ET +L F YG + +++K+ G+AF+ F+
Sbjct: 2 RPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKS--------GYAFVYFE 43
Score = 27.9 bits (59), Expect = 6.2
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = +3
Query: 153 GGDSQDHNSAEAPGRDDDRK-LFVGGLS-WETTDKELRDHFGAYGEIXSINVKTDPNTGR 326
G + A+AP K LFV T + ++ HF YG++ ++ ++
Sbjct: 74 GERGRPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKVTNVRIR------- 126
Query: 327 SRGFAFIVFKAPESIXKVMAAGEHT 401
R F+F+ F+ E K + A + +
Sbjct: 127 -RNFSFVQFETQEDATKALEATQRS 150
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = +3
Query: 195 RDDDR----KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTD 311
R DDR +L+VG LS T ++L F YG + +++K D
Sbjct: 3 RYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD 45
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = +3
Query: 195 RDDDR----KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTD 311
R DDR +L+VG LS T ++L F YG + +++K D
Sbjct: 3 RYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD 45
>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
PF02854: MIF4G domain
Length = 1186
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +3
Query: 132 NGNAENGG--GDSQDHNSAEAPGRDDDR 209
+GN E G GD D++ + PG DDD+
Sbjct: 962 DGNHERGSESGDGDDYDDGDGPGSDDDK 989
>At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing
protein RNA-binding protein LAH1, Saccharomyces
cerevisiae, PIR2:B48600; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 433
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/51 (21%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 477 EISDDEIXNFFSEFGTILQVEMPFDKTKNQ-RKGFCFITFESEQXVNDLLK 626
++ +++ +FFS++G + V MP +++ G + F +E+ +++K
Sbjct: 126 DVKREDVESFFSQYGKVNSVRMPRHVAESRIFSGVALVEFPTEEDAQNVMK 176
>At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM), PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 540
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/69 (21%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Frame = +3
Query: 246 DKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIXKVMAAGE-HTINNXK-- 416
++++ ++F +G + + + + R F F+ F PE++ ++A G H + + +
Sbjct: 272 EEDVSNYFSTFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKSILAKGNPHFVCDSRVL 327
Query: 417 VXPXKAKAR 443
V P K K +
Sbjct: 328 VKPYKEKGK 336
>At3g18810.1 68416.m02389 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 700
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 90 NDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDR 209
NDN + +N N N NGGG ++ S P R+ DR
Sbjct: 119 NDNNGNNNNGNNNDNNNQNNGGG--SNNRSPPPPSRNSDR 156
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 87 NNDNFAQDITTDNQLNGNAENGGGDSQDHNS 179
NN N D +N N N +N G+++D+N+
Sbjct: 76 NNGNNNNDNNNNNNGNNNNDNNNGNNKDNNN 106
>At1g73490.1 68414.m08508 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 259
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = +3
Query: 204 DRKLFVGGLSWETTDKELR----DHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 356
D LFV G E++ +HF + G++ I V +TG S G+AFI K
Sbjct: 116 DSALFVQGFDTSHPRHEIKTALWNHFSSCGKVYLIYVPIACSTGASVGYAFIDMK 170
>At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 427
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFC--FITFESEQXVNDLLK 626
IFV L ++ F +FG I + + ++ C FI+FE+ V +L+
Sbjct: 282 IFVANLPLNAMPPQLFELFKDFGPIKENGIQVRSSRGNANPVCFGFISFETVASVQSVLQ 341
Query: 627 TPKRT 641
K T
Sbjct: 342 AAKNT 346
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 180 AEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVK 305
A+ D+ ++++ L + T EL+D FG G++ I K
Sbjct: 271 ADCDDNCDNARIYISNLPPDVTTDELKDLFGGIGQVGRIKQK 312
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 180 AEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVK 305
A+ D+ ++++ L + T EL+D FG G++ I K
Sbjct: 271 ADCDDNCDNARIYISNLPPDVTTDELKDLFGGIGQVGRIKQK 312
>At2g47390.1 68415.m05915 expressed protein
Length = 961
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +3
Query: 132 NGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRD 263
+G AE+GGG S SA A +DD G + E+RD
Sbjct: 78 SGGAEDGGGTSNGSLSASATATEDDELAI--GTGYRLPPPEIRD 119
>At2g42240.1 68415.m05228 RNA recognition motif (RRM)-containing
protein similar to RNA-binding protein (Hermes) from
{Gallus gallus} SP|Q9W6I1, {Xenopus laevis} SP|Q9YGP5,
{Mus musculus} SP|Q9WVB0; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 124
Score = 29.1 bits (62), Expect = 2.7
Identities = 19/65 (29%), Positives = 33/65 (50%)
Frame = +3
Query: 195 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIX 374
RD+ R LFV GL + +E+ + F + + ++++ ++ FAF VF +S
Sbjct: 31 RDEVRTLFVAGLPEDVKPREIYNLFREFPGYETSHLRSSDG---AKPFAFAVFSDLQSAV 87
Query: 375 KVMAA 389
VM A
Sbjct: 88 AVMHA 92
>At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 460
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/65 (26%), Positives = 26/65 (40%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKTP 632
I+V L + + ++ F FG I + K Q F F+ FE+ L+
Sbjct: 295 IYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNKQQGFCFGFVEFETSSGKQSALEAS 354
Query: 633 KRTIG 647
TIG
Sbjct: 355 PVTIG 359
>At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 204
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +3
Query: 171 HNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSR 332
+N A G D + LFV L++E+++ +++ F +YG I + G R
Sbjct: 127 NNDPNATG-DPYKTLFVSRLNYESSESKIKREFESYGPIKRVGYSEHSLAGSVR 179
>At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 422
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/71 (19%), Positives = 33/71 (46%)
Frame = +3
Query: 429 KAKARHGKIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQX 608
K +A+ IFV L + + +++ F FG I + + ++ F+ FE+ +
Sbjct: 269 KPQAQGSSIFVANLPMDATIEQLYETFKSFGAIRKDGIQVRSYPEKKNCIGFVAFENGEA 328
Query: 609 VNDLLKTPKRT 641
V ++ + + +
Sbjct: 329 VKNVFQAHRES 339
>At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 428
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITFESEQXVNDLLKTP 632
IFV L + + +++ F FG I + + + + F F+TF S + V +L+
Sbjct: 279 IFVANLLMDATPEQLNETFKGFGAITKDGIQVRSYRLKGNCFGFVTFASAEAVKLVLQAH 338
Query: 633 KRT 641
K +
Sbjct: 339 KES 341
>At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing
protein contains Pfam domain PF00076: RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 461
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 255 LRDHFGAYGEIXSINVKTDPNTGRSRGF 338
L HF GEI + V +P+TG +GF
Sbjct: 364 LSKHFSVCGEITRVFVPRNPSTGAIKGF 391
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/47 (23%), Positives = 22/47 (46%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITF 593
+ V L + +++ F +FG + + +P D +GF F+ F
Sbjct: 38 LLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQF 84
>At5g22830.1 68418.m02669 magnesium transporter CorA-like family
protein weak similarity to SP|Q01926 RNA splicing
protein MRS2, mitochondrial precursor {Saccharomyces
cerevisiae}; contains Pfam profile PF01544: CorA-like
Mg2+ transporter protein; supporting cDNA
gi|12007446|gb|AF322255.1|AF322255
Length = 459
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 84 ANNDNFAQDITTDNQ-LNGNAENGGGDSQDHNSAEAPGRDDDRKL 215
A + A+D D + LN + ++ G DS + GRDD +K+
Sbjct: 65 AKSPTTAEDFVGDYESLNVSDDDDGSDSNSSDGDNGGGRDDSKKI 109
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 27.9 bits (59), Expect = 6.2
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +3
Query: 207 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPE 365
R L+VG L ++EL D F +GE+ S+ + GRS +AF+ F E
Sbjct: 23 RHLWVGNLPHGILERELADRFLRFGELESLAFQ----PGRS--YAFVNFNHDE 69
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +3
Query: 453 IFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGFCFITF 593
+ V L + +++ F +FG + + +P D +GF FI F
Sbjct: 39 LLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQF 85
>At2g33440.1 68415.m04099 splicing factor family protein similar to
Splicing factor U2AF 65 kDa subunit (U2 snRNP auxiliary
factor large subunit) {Homo sapiens} SP|P26368, {Mus
musculus} SP|P26369; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 247
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +3
Query: 450 KIFVGGLXXEISDDEIXNFFSEFGTILQVEMPFDKTKNQRKGF 578
KIF+GG IS + + S FG + + NQR F
Sbjct: 41 KIFIGGFSKAISSEMLMEIVSVFGPLKAYRFVSNNDLNQRCAF 83
>At1g79100.1 68414.m09223 arginine/serine-rich protein-related
similar to arginine/serine-rich protein [Arabidopsis
thaliana] GI:6601502
Length = 70
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 252 ELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKA 359
++R G +GEI + + D SRG A++ FKA
Sbjct: 3 KIRVFRGDFGEIIHVQLAIDRAANLSRGDAYVEFKA 38
>At1g12290.1 68414.m01421 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 884
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = -3
Query: 638 SFGSLKQIIYXLLRFKCDETEALSLVLCFVKGHLHL*DSSKFTEEVXDFII 486
+FG++K+ I +L++ D E+ S+ CF+ L D E + D+ I
Sbjct: 383 NFGAVKERILPILKYSYDNLESESVKTCFLYCSLFPEDDLIEKERLIDYWI 433
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,891,930
Number of Sequences: 28952
Number of extensions: 275362
Number of successful extensions: 1261
Number of sequences better than 10.0: 230
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1211
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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