Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_K04
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces...    25   7.1  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.1  

>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 369

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 124 ESAQMWENETKLLDVTSRVPPKSPLKK 204
           ES +  ENE   +DVT  VPP   L +
Sbjct: 25  ESEKEGENEVLEIDVTKPVPPSKKLMR 51


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -1

Query: 217  SFTEIFSVDFLEEPEKLRPAALFHFP 140
            SF  IFS  F EEPE  +    F  P
Sbjct: 1836 SFDNIFSYIFSEEPESKKSPIWFELP 1861


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,337,119
Number of Sequences: 5004
Number of extensions: 42933
Number of successful extensions: 85
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)