Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_K03
(433 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0340 + 17946133-17946136,17946207-17946342,17946428-179465... 95 2e-20
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086... 49 1e-06
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039... 31 0.40
04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,962... 29 1.2
12_02_0172 - 14891923-14892102,14892894-14892980 29 2.1
02_01_0228 + 1507314-1507566,1507645-1507913,1508010-1508213,150... 29 2.1
12_01_0152 - 1168928-1169377 28 3.7
11_01_0155 - 1287003-1287452 28 3.7
10_07_0054 - 12421618-12422025,12422230-12422308,12423076-12423107 28 3.7
08_02_0431 + 17053928-17054189,17054296-17054564,17054661-170548... 28 3.7
07_01_0794 - 6179424-6179714,6179797-6179844,6180189-6180248,618... 28 3.7
01_01_0676 + 5194718-5194940,5195420-5195952 28 3.7
04_04_0623 + 26669284-26669421,26670906-26671564,26671948-266721... 27 8.6
>02_03_0340 +
17946133-17946136,17946207-17946342,17946428-17946584,
17947330-17947458
Length = 141
Score = 95.5 bits (227), Expect = 2e-20
Identities = 59/141 (41%), Positives = 76/141 (53%), Gaps = 18/141 (12%)
Frame = +3
Query: 45 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 224
M ++K ELR K+ + LRVAKVTGG +KLSKI+VVR +IARV V
Sbjct: 1 MARIKVDELRGKNKAELQAQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRTSIARVLTV 60
Query: 225 YHQKMKVNLRNHYKNKKYKPLHLRAKKTRAMRKALTKH------------------EAKI 350
QK + LR YK K PL LR KKTRA+R+ LTKH + +
Sbjct: 61 ISQKQRAALREAYKKKSLLPLDLRPKKTRAIRRRLTKHQLCYTCIRLLTFSMVAISQLSL 120
Query: 351 KTRKEIRKKSLFPPRVYAVKA 413
KT +E +++ FP R YA+KA
Sbjct: 121 KTEREKKREKYFPMRKYAIKA 141
>06_03_1515 -
30707600-30707613,30708093-30708167,30708596-30708647,
30708751-30708831,30709145-30709219,30709870-30709977,
30710026-30710032,30710133-30710268,30710361-30710685
Length = 290
Score = 49.2 bits (112), Expect = 1e-06
Identities = 38/112 (33%), Positives = 52/112 (46%)
Frame = +3
Query: 15 SVSKRT*PVKMGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVV 194
S + T V M ++K LR ++ + LRVA+VTGG +KLS I+ V
Sbjct: 98 SAAAVTVTVAMARIKVDVLRGRNKAELQAQLKDLKAELSVLRVARVTGGAPNKLSNIK-V 156
Query: 195 RKAIARVYIVYHQKMKVNLRNHYKNKKYKPLHLRAKKTRAMRKALTKHEAKI 350
R A+ Y K K PL LR KKT A+R+ LTKH+ +
Sbjct: 157 RTALREAY-------------KKKKKSLLPLDLRPKKTCAIRRRLTKHQGML 195
>02_05_0484 -
29401195-29401404,29401572-29401755,29401866-29403973,
29404320-29404403,29404507-29404777,29404864-29405117,
29405513-29405722,29406357-29406503
Length = 1155
Score = 31.1 bits (67), Expect = 0.40
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 228 HQKMKVNLRNHYKNKKYKPLHLRAKKTRAMRKALTKHEAKIKTRKE 365
H K + ++ NK+ LHL+ K+ + + L + E KI R+E
Sbjct: 270 HTKATLKIKEDDINKRLAELHLQEKEAESKNRKLEEREKKIAEREE 315
>04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,
9625520-9626032,9626801-9629153
Length = 1342
Score = 29.5 bits (63), Expect = 1.2
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +3
Query: 252 RNHYKN--KKYKPLHLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVK 410
RNH N K PL+ + +K M+K++ + T E K +FPP Y K
Sbjct: 1048 RNHINNLAKLAGPLYAKLRKN-GMKKSMNYSGVEFFTFGEDNKLKVFPPNTYKFK 1101
>12_02_0172 - 14891923-14892102,14892894-14892980
Length = 88
Score = 28.7 bits (61), Expect = 2.1
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +3
Query: 141 VAKVTGGVASKLSKIRVVRKAIARVY--IVYHQKMKVNLRNHYKNKKYKPLHLRAKKTRA 314
+A + GV K+S A R +V H+ +++ RNH ++KY+ L R+
Sbjct: 1 MANLQVGVTRKISDPNTKAVATDRTIRNLVCHEDLRLTCRNHLSHQKYRSSLLGETPGRS 60
Query: 315 MRKALTK 335
R+A TK
Sbjct: 61 -RRAKTK 66
>02_01_0228 +
1507314-1507566,1507645-1507913,1508010-1508213,
1508323-1508415,1508509-1508604,1508688-1509032,
1509123-1509191,1509284-1509367,1509455-1509520,
1509735-1509800,1509934-1509999,1510097-1510162,
1510280-1510327,1510406-1510468,1510554-1510619,
1510782-1510841,1511185-1511232,1511315-1511605
Length = 750
Score = 28.7 bits (61), Expect = 2.1
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +3
Query: 243 VNLRNHYKNKKYKPLHLRAKKTRAMRKALTKHEAK--IKTRKEIRKKSLFPPRVYAVKA 413
+ L NH+ N+K K + + KK +KA+ K +TR+E+R+K P + Y +A
Sbjct: 230 IALVNHWMNEKSKRISEQNKKNCQKKKAIHTAGTKSFARTREEMRQKD--PAKKYPHRA 286
>12_01_0152 - 1168928-1169377
Length = 149
Score = 27.9 bits (59), Expect = 3.7
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 147 KVTGGVASKLSKIRVVRKAIARVYIVYHQK 236
+V GG K S+I +R+AIA+ + Y+QK
Sbjct: 74 RVRGG--GKTSQIYAIRQAIAKALVAYYQK 101
>11_01_0155 - 1287003-1287452
Length = 149
Score = 27.9 bits (59), Expect = 3.7
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 147 KVTGGVASKLSKIRVVRKAIARVYIVYHQK 236
+V GG K S+I +R+AIA+ + Y+QK
Sbjct: 74 RVRGG--GKTSQIYAIRQAIAKALVAYYQK 101
>10_07_0054 - 12421618-12422025,12422230-12422308,12423076-12423107
Length = 172
Score = 27.9 bits (59), Expect = 3.7
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = +3
Query: 156 GGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLHLRAKKTRAM 317
G ++ + V K + Y+ + K + ++ H K K H R+ KTR++
Sbjct: 48 GNISGSQAAAAVKSKPWKKRYLTFLSKFQNKMKKHKKPDNIKAHHTRSHKTRSI 101
>08_02_0431 +
17053928-17054189,17054296-17054564,17054661-17054864,
17054974-17055066,17055160-17055255,17055339-17055683,
17055935-17056018,17056106-17056171,17056268-17056333,
17056436-17056501,17056635-17056700,17056798-17056863,
17056981-17057028,17057107-17057169,17057255-17057320,
17057483-17057542,17057888-17057935,17058019-17058255,
17058346-17058366
Length = 741
Score = 27.9 bits (59), Expect = 3.7
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +3
Query: 243 VNLRNHYKNKKYKPLHLRAKKTRAMRKALTKHEAK--IKTRKEIRKK 377
+ L NH+ N+K K + + KK +KA+ K +TR+E+R+K
Sbjct: 233 IALVNHWMNEKSKRISEQNKKNCQKKKAIHTAGTKSFARTREEMRQK 279
>07_01_0794 -
6179424-6179714,6179797-6179844,6180189-6180248,
6180411-6180476,6180562-6180624,6180703-6180750,
6180868-6180933,6181031-6181096,6181230-6181295,
6181510-6181575,6181663-6181746,6181839-6181907,
6181998-6182342,6182426-6182521,6182615-6182707,
6182817-6183020,6183117-6183385,6183492-6183753
Length = 753
Score = 27.9 bits (59), Expect = 3.7
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +3
Query: 243 VNLRNHYKNKKYKPLHLRAKKTRAMRKALTKHEAK--IKTRKEIRKK 377
+ L NH+ N+K K + + KK +KA+ K +TR+E+R+K
Sbjct: 233 IALVNHWMNEKSKRISEQNKKNCQKKKAIHTAGTKSFARTREEMRQK 279
>01_01_0676 + 5194718-5194940,5195420-5195952
Length = 251
Score = 27.9 bits (59), Expect = 3.7
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +3
Query: 252 RNHYKN--KKYKPLHLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVK 410
RNH +N K PL+ +K M+K++ + + T E K +FPP Y K
Sbjct: 54 RNHIQNLAKLAGPLYAILRKN-GMKKSMNYNGVEFFTFGEDNKLRIFPPNSYKFK 107
>04_04_0623 +
26669284-26669421,26670906-26671564,26671948-26672140,
26672220-26672284,26672399-26672609,26673284-26673515,
26674463-26674521,26674651-26674680,26674761-26674850
Length = 558
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -3
Query: 239 HLLVIHNVNTCDSFSYNTDLG 177
H +HN N CDS Y D G
Sbjct: 396 HYWPVHNDNKCDSIKYAVDWG 416
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,017,027
Number of Sequences: 37544
Number of extensions: 136174
Number of successful extensions: 405
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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