Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_K03
         (433 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38468| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.5e-23)        114   3e-26
SB_47982| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.53 
SB_38972| Best HMM Match : PIP5K (HMM E-Value=0)                       28   2.8  
SB_5758| Best HMM Match : fn3 (HMM E-Value=6.6e-18)                    28   3.8  
SB_21046| Best HMM Match : DUF331 (HMM E-Value=3.2)                    27   5.0  
SB_4336| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.6  
SB_9162| Best HMM Match : Ribosomal_L19e (HMM E-Value=3.4)             27   6.6  
SB_52560| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_40791| Best HMM Match : G2F (HMM E-Value=0.9)                       27   8.7  
SB_11455| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_38468| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.5e-23)
          Length = 131

 Score =  114 bits (275), Expect = 3e-26
 Identities = 64/120 (53%), Positives = 75/120 (62%)
 Frame = +3

Query: 51  KVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYH 230
           KVK  ELR K                + LRVAKVTGG ASKLSKI+VVRK++ARV  V  
Sbjct: 11  KVKAHELRGKKKDELLKQLDELKTELSQLRVAKVTGGAASKLSKIKVVRKSVARVLTVVS 70

Query: 231 QKMKVNLRNHYKNKKYKPLHLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVK 410
           Q  + NLR  Y+ KKY PL LR K TRAMR++LTK EA  KT K+ +K + F  R YAVK
Sbjct: 71  QTQRDNLRKFYRKKKYLPLDLRPKLTRAMRRSLTKKEASSKTLKQQKKLAHFSLRKYAVK 130


>SB_47982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 709

 Score = 30.7 bits (66), Expect = 0.53
 Identities = 22/57 (38%), Positives = 31/57 (54%)
 Frame = +3

Query: 165 ASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLHLRAKKTRAMRKALTK 335
           ASK SK RV R  IA++    H  ++  +RN   N K     +R  K+RAM+K  T+
Sbjct: 588 ASKKSKKRVGRPDIAQLMRAKHFGIQTEVRN--LNSKCLIFGVRKFKSRAMKKMQTR 642


>SB_38972| Best HMM Match : PIP5K (HMM E-Value=0)
          Length = 426

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 198 KAIARVYIVYHQKMKVNLRNHYKNKKYKPLHLRAKKTR 311
           KA ++V +  H   K NL +H+K K+Y P+  R  + R
Sbjct: 70  KAYSKVRVDNHLFNKENLPSHFKFKEYCPMVFRNLRER 107


>SB_5758| Best HMM Match : fn3 (HMM E-Value=6.6e-18)
          Length = 1191

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +2

Query: 212 CLHCVSPEDEGQS*KPLQKQEIQAFTFKSQEDPCYAQGSY*TRSKDQDEERDQ 370
           C     PE EG   K  +++ + AFTF  Q++ CY    Y   SK ++ + DQ
Sbjct: 57  CESSNKPEKEGS--KDKKRRLLHAFTFGKQKNKCY----YTKASKYKEVKEDQ 103


>SB_21046| Best HMM Match : DUF331 (HMM E-Value=3.2)
          Length = 245

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 17/69 (24%), Positives = 30/69 (43%)
 Frame = +3

Query: 132 NLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLHLRAKKTR 311
           N+   K  G V S +    V ++ I ++ +    KMK  + +HY++       L AK T 
Sbjct: 79  NVTSYKYLGIVFSAIGNFNVAKEEIKKIALKALYKMKKEMGSHYRDNLKLATRLFAKLTN 138

Query: 312 AMRKALTKH 338
             +    K+
Sbjct: 139 KSKCRSVKY 147


>SB_4336| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +3

Query: 210 RVYIVYHQKMKVNLRNHYKNKKYKPLHLRAKKTRAMRKALTKHEAKI--KTRKEIRKKS 380
           R  +V  +   VN+R+   NKK+K ++ R++    M+  +    +K+  K  K + K+S
Sbjct: 23  RPKVVNMRSKVVNMRSKVVNKKFKAVNKRSRAVN-MKSTVVSMRSKVVDKRSKSVDKRS 80


>SB_9162| Best HMM Match : Ribosomal_L19e (HMM E-Value=3.4)
          Length = 160

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 22/83 (26%), Positives = 41/83 (49%)
 Frame = +3

Query: 129 TNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLHLRAKKT 308
           TN  V  ++ G    + + R ++K   R+     +++K   R   K K  K    R++K 
Sbjct: 24  TNAVVFVLSQGKIRSIERQRQIKKLTKRI-----KRIKALNRGKRKKKHSK----RSQKL 74

Query: 309 RAMRKALTKHEAKIKTRKEIRKK 377
           R MR+ L + + K K+ ++ R+K
Sbjct: 75  REMRRWLRRFKQKGKSDRDARRK 97


>SB_52560| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1263

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +2

Query: 284  FTFKSQEDPCYAQGSY*TRSKDQDEERD 367
            F   S  DP Y  G Y     D+DEE D
Sbjct: 1207 FNVTSGSDPDYGNGDYDYDENDEDEEGD 1234


>SB_40791| Best HMM Match : G2F (HMM E-Value=0.9)
          Length = 535

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 17/62 (27%), Positives = 32/62 (51%)
 Frame = +3

Query: 189 VVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLHLRAKKTRAMRKALTKHEAKIKTRKEI 368
           V R  ++R+ I +  +   +   +   K Y+ L+L +K    + KALT  + K  + +E+
Sbjct: 149 VGRDLVSRLKITFAGETLQDTNRYDVFKTYEELYL-SKSREMVGKALTHDDVKRMSAEEV 207

Query: 369 RK 374
           RK
Sbjct: 208 RK 209


>SB_11455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 210 RVYIVYHQKMKVNLRNHYKNKKYKPLH 290
           +VYIV H   +V +  HY N+ Y   H
Sbjct: 160 QVYIVKHHSNQVYIDKHYSNQVYIDKH 186


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,823,098
Number of Sequences: 59808
Number of extensions: 173246
Number of successful extensions: 542
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)