Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_K03
(433 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02610.1 68418.m00197 60S ribosomal protein L35 (RPL35D) ribo... 119 7e-28
At3g55170.2 68416.m06128 60S ribosomal protein L35 (RPL35C) vari... 119 7e-28
At3g55170.1 68416.m06127 60S ribosomal protein L35 (RPL35C) vari... 119 7e-28
At2g39390.1 68415.m04834 60S ribosomal protein L35 (RPL35B) 119 1e-27
At3g09500.1 68416.m01129 60S ribosomal protein L35 (RPL35A) simi... 118 1e-27
At5g08160.1 68418.m00952 serine/threonine protein kinase, putati... 32 0.15
At5g08160.2 68418.m00953 serine/threonine protein kinase, putati... 31 0.34
At5g25330.1 68418.m03005 hypothetical protein contains Pfam prof... 28 2.4
At1g08730.1 68414.m00969 myosin heavy chain (PCR43) identical to... 28 2.4
At4g14350.2 68417.m02211 protein kinase family protein contains ... 27 4.1
At4g14350.1 68417.m02210 protein kinase family protein contains ... 27 4.1
At2g38823.1 68415.m04770 expressed protein 27 5.5
At1g54560.1 68414.m06222 myosin, putative similar to myosin GI:4... 27 7.2
>At5g02610.1 68418.m00197 60S ribosomal protein L35 (RPL35D)
ribosomal protein L35- cytosolic, Arabidopsis thaliana,
PIR:T00549
Length = 123
Score = 119 bits (287), Expect = 7e-28
Identities = 63/122 (51%), Positives = 77/122 (63%)
Frame = +3
Query: 45 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 224
M ++K ELR K LRVAKVTGG +KLSKI+VVRK+IA+V V
Sbjct: 1 MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 225 YHQKMKVNLRNHYKNKKYKPLHLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYA 404
QK K LR YKNKK PL LR KKTRA+R+ LTKH+A +KT +E +K+ FP R YA
Sbjct: 61 ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPVRKYA 120
Query: 405 VK 410
+K
Sbjct: 121 IK 122
>At3g55170.2 68416.m06128 60S ribosomal protein L35 (RPL35C) various
ribosomal L35 proteins
Length = 123
Score = 119 bits (287), Expect = 7e-28
Identities = 63/122 (51%), Positives = 77/122 (63%)
Frame = +3
Query: 45 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 224
M ++K ELR K +LRVAKVTGG +KLSKI+VVRK+IA+V V
Sbjct: 1 MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 225 YHQKMKVNLRNHYKNKKYKPLHLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYA 404
QK K LR YKNKK PL LR KKTRA+R+ LTKH+A +KT +E +K FP R YA
Sbjct: 61 SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYA 120
Query: 405 VK 410
+K
Sbjct: 121 IK 122
>At3g55170.1 68416.m06127 60S ribosomal protein L35 (RPL35C) various
ribosomal L35 proteins
Length = 123
Score = 119 bits (287), Expect = 7e-28
Identities = 63/122 (51%), Positives = 77/122 (63%)
Frame = +3
Query: 45 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 224
M ++K ELR K +LRVAKVTGG +KLSKI+VVRK+IA+V V
Sbjct: 1 MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 225 YHQKMKVNLRNHYKNKKYKPLHLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYA 404
QK K LR YKNKK PL LR KKTRA+R+ LTKH+A +KT +E +K FP R YA
Sbjct: 61 SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYA 120
Query: 405 VK 410
+K
Sbjct: 121 IK 122
>At2g39390.1 68415.m04834 60S ribosomal protein L35 (RPL35B)
Length = 123
Score = 119 bits (286), Expect = 1e-27
Identities = 63/122 (51%), Positives = 77/122 (63%)
Frame = +3
Query: 45 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 224
M ++K ELR K LRVAKVTGG +KLSKI+VVRK+IA+V V
Sbjct: 1 MARIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 225 YHQKMKVNLRNHYKNKKYKPLHLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYA 404
QK K LR YKNKK PL LR KKTRA+R+ LTKH+A +KT +E +K+ FP R YA
Sbjct: 61 ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120
Query: 405 VK 410
+K
Sbjct: 121 IK 122
>At3g09500.1 68416.m01129 60S ribosomal protein L35 (RPL35A) similar
to 60S ribosomal protein L35 GB:AAC27830
Length = 123
Score = 118 bits (285), Expect = 1e-27
Identities = 63/122 (51%), Positives = 77/122 (63%)
Frame = +3
Query: 45 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 224
M ++K ELR K LRVAKVTGG +KLSKI+VVRK+IA+V V
Sbjct: 1 MARIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 225 YHQKMKVNLRNHYKNKKYKPLHLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYA 404
QK K LR YKNKK PL LR KKTRA+R+ LTKH+A +KT +E +K+ FP R YA
Sbjct: 61 SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120
Query: 405 VK 410
+K
Sbjct: 121 IK 122
>At5g08160.1 68418.m00952 serine/threonine protein kinase, putative
identical to serine/threonine protein kinase
[Arabidopsis thaliana] gi|2109293|gb|AAB69123
Length = 347
Score = 32.3 bits (70), Expect = 0.15
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Frame = +3
Query: 270 KKYK-PLHLRAKKTRAMRKALTKHEAKIK-TRKEIRKKSLF 386
KK K P HL A T AM+K L +++ +++ R+EIR SLF
Sbjct: 63 KKVKDPAHLSADGTYAMKKVLIQNKEQLELVREEIRVSSLF 103
>At5g08160.2 68418.m00953 serine/threonine protein kinase, putative
identical to serine/threonine protein kinase
[Arabidopsis thaliana] gi|2109293|gb|AAB69123
Length = 311
Score = 31.1 bits (67), Expect = 0.34
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +3
Query: 282 PLHLRAKKTRAMRKALTKHEAKIK-TRKEIRKKSLF 386
P HL A T AM+K L +++ +++ R+EIR SLF
Sbjct: 32 PAHLSADGTYAMKKVLIQNKEQLELVREEIRVSSLF 67
>At5g25330.1 68418.m03005 hypothetical protein contains Pfam profile
PF03267: Arabidopsis protein of unknown function, DUF266
Length = 366
Score = 28.3 bits (60), Expect = 2.4
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 222 VYHQKMKVNLRNHYKNKKYKPLHLRAKKTRAMRKALTKHEAKIKTRKE 365
V H VN +H + YKPL +RA+ + +R A ++ +TRK+
Sbjct: 290 VTHVDWSVN--DHGHPRTYKPLEVRAELIQKLRSARPRYGDGNRTRKD 335
>At1g08730.1 68414.m00969 myosin heavy chain (PCR43) identical to
myosin heavy chain PCR43 (PIR:T00727) [Arabidopsis
thaliana]; similar to ESTs gb|R30087 and gb|AA394762
Length = 1538
Score = 28.3 bits (60), Expect = 2.4
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +3
Query: 234 KMKVNLRNHYKNKKYKPLHLRAKKTRAMRKALTKHEAKIKTRKEIRKKSL 383
K++ N R HY K YK LH+ + + +A+ + + + RK+ + ++
Sbjct: 797 KIQKNGRRHYSRKSYKKLHVASLVVQTGLRAMAARK-QFRFRKQTKAATI 845
>At4g14350.2 68417.m02211 protein kinase family protein contains
similarity to Swiss-Prot:O13310 serine/threonine-protein
kinase orb6 [Schizosaccharomyces pombe]
Length = 551
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +3
Query: 129 TNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKK 275
+N++ T G LS I + A A++YI H KM++ K ++
Sbjct: 27 SNVKEGPKTAGGEEALSNITKEKAAAAKLYIENHYKMQMQSLQERKERR 75
>At4g14350.1 68417.m02210 protein kinase family protein contains
similarity to Swiss-Prot:O13310 serine/threonine-protein
kinase orb6 [Schizosaccharomyces pombe]
Length = 551
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +3
Query: 129 TNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKK 275
+N++ T G LS I + A A++YI H KM++ K ++
Sbjct: 27 SNVKEGPKTAGGEEALSNITKEKAAAAKLYIENHYKMQMQSLQERKERR 75
>At2g38823.1 68415.m04770 expressed protein
Length = 258
Score = 27.1 bits (57), Expect = 5.5
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Frame = +3
Query: 180 KIRVVRKAIARVYIVYHQKMKVN--LRNHYKNKKYKPLHLRAKKTRAMRKALTKHEAKIK 353
+I+ ++K I + + +K V +N YK+ + K HL KK + + +
Sbjct: 173 EIKALKKLIRELQKDWEEKQHVKQYTKNKYKDLEQKVKHLEKKKEQLAGLRDEERKIMFG 232
Query: 354 TRKEIRKKSLFPPRVYAVK 410
T+K +K P Y +K
Sbjct: 233 TKKTHDRKIGTYPEAYYIK 251
>At1g54560.1 68414.m06222 myosin, putative similar to myosin
GI:433663 from [Arabidopsis thaliana]
Length = 1529
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +3
Query: 234 KMKVNLRNHYKNKKYKPLHLRAKKTRAMRKALTKHEAKIKTRKEIR 371
K++ N R + K YK LH+ A + +A+ H+ + + RK+ +
Sbjct: 792 KIQKNARRLHSRKSYKNLHVAALVVQTGLRAMAAHK-QFRFRKQTK 836
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,564,600
Number of Sequences: 28952
Number of extensions: 120720
Number of successful extensions: 360
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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