Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_K01
         (338 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    23   0.65 
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   3.4  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    21   3.4  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    20   8.0  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 0.65
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 143 TPRNSXRPQWLGYSNCN*SEIPGHDLIFL 229
           T RN+ + QWL  S+   SEIP     FL
Sbjct: 291 TFRNTKKLQWLDTSHNRISEIPNDLFRFL 319


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 11/40 (27%), Positives = 15/40 (37%)
 Frame = +3

Query: 99  SSLFKPFSKMSETLKLRGTLXGHNGWVTQIATNPKYPDMI 218
           + L+K   K    L L G L     +      NP +  MI
Sbjct: 284 TDLYKKIKKAFPPLSLHGQLLWREFFYCAATKNPNFDKMI 323


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 140 KTPRNSXRPQWLGYSN 187
           KTP      QW+GY N
Sbjct: 324 KTPYMYKGNQWVGYDN 339


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -3

Query: 72  HVLKEHETYGDGRPSTAN*RC 10
           H    H T G  R + A+ RC
Sbjct: 282 HTTTSHNTRGTPRTTPASSRC 302


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,900
Number of Sequences: 336
Number of extensions: 1392
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6558670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)