Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_K01
         (338 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ...    57   8e-10
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    33   0.012
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    31   0.048
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    30   0.084
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13...    27   0.78 
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    26   1.4  
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom...    26   1.8  
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    25   3.2  
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo...    25   3.2  
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe...    25   3.2  
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    25   4.2  
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    24   5.5  
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    24   7.3  
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    24   7.3  
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    23   9.6  
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ...    23   9.6  

>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 314

 Score = 56.8 bits (131), Expect = 8e-10
 Identities = 24/41 (58%), Positives = 32/41 (78%)
 Frame = +3

Query: 126 MSETLKLRGTLXGHNGWVTQIATNPKYPDMILSSSRDKTLI 248
           M E L LR TL GH+GWVT ++T P+ PD++LS SRDK++I
Sbjct: 1   MPEQLVLRATLEGHSGWVTSLSTAPENPDILLSGSRDKSII 41



 Score = 27.9 bits (59), Expect = 0.45
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 132 ETLKLRGTLXGHNGWVTQIATNPKYPDMILSSSRDKTLI 248
           ET  LR +  GH G+V+ +  +P    +  S  RD TL+
Sbjct: 180 ETFSLRTSHYGHTGYVSAVTISPD-GSLCASGGRDGTLM 217


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 33.1 bits (72), Expect = 0.012
 Identities = 23/80 (28%), Positives = 36/80 (45%)
 Frame = +3

Query: 27  SMVGHHRRFRVLLTRATGPDASGXSSLFKPFSKMSETLKLRGTLXGHNGWVTQIATNPKY 206
           S+V HH RF+  LT +T P  S  S+ F   S +S +L    ++  HN     +  N   
Sbjct: 128 SVVSHHSRFQFSLTPSTTPPPSSASAPFPINSNISNSL---DSVSQHNSSADSLFVNGDV 184

Query: 207 PDMILSSSRDKTLIAVEKLD 266
           P    +S+   +   V  +D
Sbjct: 185 PSPFGASTASSSSRRVYSVD 204


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 31.1 bits (67), Expect = 0.048
 Identities = 20/68 (29%), Positives = 35/68 (51%)
 Frame = +3

Query: 120 SKMSETLKLRGTLXGHNGWVTQIATNPKYPDMILSSSRDKTLIAVEKLDPXERKTKPPLP 299
           S ++ TLK   T    NG  +  ++NP+    + S++ +K  +A ++  P    T PP+ 
Sbjct: 403 SPLASTLK-PSTANDTNGSSSSSSSNPRTSSPLASNAENKPPVA-QQSPPVLLPTLPPIQ 460

Query: 300 VITLQKSR 323
             T+Q SR
Sbjct: 461 TTTIQTSR 468


>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 30.3 bits (65), Expect = 0.084
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 156 LXGHNGWVTQIATNPKYPDMILSSSRDKTLIAVE 257
           L GH  WV  +  +P   +MILSSS D ++I  E
Sbjct: 264 LMGHEDWVMSVDWHPT-KEMILSSSADSSMIVWE 296


>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 777

 Score = 27.1 bits (57), Expect = 0.78
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
 Frame = +3

Query: 162 GHNGWVTQIATNPK----YPDMILSSSRDKTL 245
           GH   VT +A  P     YP  + SSS+D+TL
Sbjct: 408 GHTASVTAVALGPLDVNGYPTFLASSSQDRTL 439


>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 153 TLXGHNGWVTQIATNPKYPDMILSSSRDKTL 245
           T  GH+ +V  +A NPK  +   SS  D T+
Sbjct: 136 TFEGHSRYVMSLAINPKDTNTFASSCLDGTV 166


>SPBC32F12.02 |rec14||recombination protein
           Rec14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 150 GTLXGHNGWVTQIATNPKYPDMILSS 227
           G L GH  W+  +A NP   D++LS+
Sbjct: 223 GQLRGHAAWIFAVAFNP-VGDLLLSA 247


>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +3

Query: 153 TLXGHNGWVTQIATNPKYPDMILSSSRDKTLIAVEKLD 266
           +L    GW      N KYPD        K L+A +K D
Sbjct: 639 SLVTQTGWALDALINAKYPDRKPIEKGIKFLMASQKSD 676


>SPCC63.06 |||human WDR89 family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 331

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 18/73 (24%), Positives = 34/73 (46%)
 Frame = +3

Query: 72  ATGPDASGXSSLFKPFSKMSETLKLRGTLXGHNGWVTQIATNPKYPDMILSSSRDKTLIA 251
           ATG + +   +  + +   SE   +R     HN  +T +  +PK  +++L+ S D  L++
Sbjct: 114 ATGSELTRSLASVQLWDVRSEQKLIRQWNDAHNDDITHLQFHPKDNELLLTGSVD-GLVS 172

Query: 252 VEKLDPXERKTKP 290
           +      E  T P
Sbjct: 173 LLDTTKEEDSTDP 185


>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = +3

Query: 156 LXGHNGWVTQIATNPKYPDMILSSSRDKTL 245
           L  H+G ++ ++ NP  P  + + S D+ +
Sbjct: 379 LQAHDGPISCLSVNPSVPSFVATGSTDRVV 408


>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 153 TLXGHNGWVTQIATNPKYPDMILSSSRDKTL 245
           T+ GH  WV+ +A  P    +I + S D T+
Sbjct: 172 TMKGHTNWVSCVAWAPD-ASIIATGSMDNTI 201


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 210 DMILSSSRDKTLIAVEKLDPXE 275
           D+   S  DK+LI +E LDP +
Sbjct: 271 DLYYQSIEDKSLIKLEDLDPVD 292


>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = +3

Query: 156 LXGHNGWVTQIATNPKYPDMILSSSRDKTLIAVEKLDPXER 278
           +  H+  +  +A NP    ++ ++S DKT+   +  +P +R
Sbjct: 277 IQAHSKAINAVAINPFNDYLLATASADKTVALWDLRNPYQR 317


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 54  RVLLTRATGPDASGXSSLFKPFSKMSETL 140
           R LL+R     +   SS F P SK SET+
Sbjct: 716 RFLLSRINPSVSFNKSSQFSPMSKDSETV 744


>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 150 GTLXGHNGWVTQIATNPKYPDMILSSSRDKTL 245
           GTL GH   V  +A +P   + I++ + D+TL
Sbjct: 498 GTLKGHTDRVLYLAMSPN-GENIVTGAADETL 528


>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
           subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = -2

Query: 298 GKGGLVFRSXGSSFSTAMRVLSREEDKIMSGYFGLVAI*VTQPLWPXRVPRSFNV 134
           G+   +F    +  S A+    R+++ I+  Y   V     QP+ P  +PR   V
Sbjct: 11  GRNMSIFLGFVAGISGAIYYDRRQKNLIIEKYCSQVRHLADQPMAPLELPRKLKV 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,312,265
Number of Sequences: 5004
Number of extensions: 22632
Number of successful extensions: 64
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)