Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_K01
         (338 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42943| Best HMM Match : WD40 (HMM E-Value=0)                        72   1e-13
SB_32324| Best HMM Match : WD40 (HMM E-Value=6.4e-21)                  72   1e-13
SB_12443| Best HMM Match : WD40 (HMM E-Value=1e-24)                    36   0.006
SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.045
SB_25894| Best HMM Match : Coatomer_WDAD (HMM E-Value=0)               32   0.14 
SB_21573| Best HMM Match : WD40 (HMM E-Value=4.1e-32)                  31   0.18 
SB_5612| Best HMM Match : WD40 (HMM E-Value=4.4e-18)                   29   0.73 
SB_51892| Best HMM Match : WD40 (HMM E-Value=8.7e-14)                  29   1.3  
SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.9  
SB_29857| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.9  
SB_45041| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.9  
SB_19094| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.9  
SB_42662| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.1  
SB_25632| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.1  
SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.8  
SB_35849| Best HMM Match : Fibrinogen_C (HMM E-Value=0.15)             26   9.0  
SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37)                 26   9.0  
SB_54574| Best HMM Match : WD40 (HMM E-Value=0)                        26   9.0  
SB_46028| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.0  
SB_46027| Best HMM Match : Fibrinogen_C (HMM E-Value=0.24)             26   9.0  

>SB_42943| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 273

 Score = 72.1 bits (169), Expect = 1e-13
 Identities = 34/44 (77%), Positives = 35/44 (79%)
 Frame = +3

Query: 126 MSETLKLRGTLXGHNGWVTQIATNPKYPDMILSSSRDKTLIAVE 257
           M+E L LRGTL GHNGWVTQIATNP  PD ILSSSRDK LI  E
Sbjct: 38  MAEQLSLRGTLKGHNGWVTQIATNPSNPDTILSSSRDKKLIVWE 81


>SB_32324| Best HMM Match : WD40 (HMM E-Value=6.4e-21)
          Length = 123

 Score = 72.1 bits (169), Expect = 1e-13
 Identities = 34/44 (77%), Positives = 35/44 (79%)
 Frame = +3

Query: 126 MSETLKLRGTLXGHNGWVTQIATNPKYPDMILSSSRDKTLIAVE 257
           M+E L LRGTL GHNGWVTQIATNP  PD ILSSSRDK LI  E
Sbjct: 1   MAEQLSLRGTLKGHNGWVTQIATNPSNPDTILSSSRDKKLIVWE 44


>SB_12443| Best HMM Match : WD40 (HMM E-Value=1e-24)
          Length = 515

 Score = 36.3 bits (80), Expect = 0.006
 Identities = 16/31 (51%), Positives = 21/31 (67%)
 Frame = +3

Query: 153 TLXGHNGWVTQIATNPKYPDMILSSSRDKTL 245
           TL GH   V  +A NP+ PDM++S+S D TL
Sbjct: 472 TLTGHQNVVNCVAFNPRDPDMLVSASDDHTL 502


>SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1649

 Score = 33.5 bits (73), Expect = 0.045
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +3

Query: 132 ETLKLRGTLXGHNGWVTQIATNPKYPDMILSSSRDKTL 245
           +TL L  TL GH  WV+ +   P     I+SSS DKT+
Sbjct: 778 DTLSLVHTLKGHKNWVSGVLVTPD-SKRIISSSYDKTV 814


>SB_25894| Best HMM Match : Coatomer_WDAD (HMM E-Value=0)
          Length = 1066

 Score = 31.9 bits (69), Expect = 0.14
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +3

Query: 162 GHNGWVTQIATNPKYPDMILSSSRDKTLIAVEKLDPXERKTKPPL 296
           GH  +V QI  NPK  +   S+S D+T+  V  +D      KP L
Sbjct: 56  GHTHYVMQIVINPKDNNQFASASLDRTIKGVNCVDYFHGGEKPYL 100


>SB_21573| Best HMM Match : WD40 (HMM E-Value=4.1e-32)
          Length = 458

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 132 ETLKLRGTLXGHNGWVTQIATNPKYPDMILSSSRDKTL 245
           + L L     GHN  V Q+  +P  PD+ +++S DKT+
Sbjct: 65  DRLTLDHIYKGHNESVDQLCWHPSNPDLFVTASGDKTI 102


>SB_5612| Best HMM Match : WD40 (HMM E-Value=4.4e-18)
          Length = 736

 Score = 29.5 bits (63), Expect = 0.73
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 156 LXGHNGWVTQIATNPKYPDMILSSSRD 236
           L GH G VT ++ +P +PD +++SS D
Sbjct: 18  LVGHCGRVTALSWSPHHPDRLVTSSYD 44



 Score = 25.8 bits (54), Expect = 9.0
 Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
 Frame = +3

Query: 15  SSSRSMVGHHRRFRVLLTRATGPDASGXSSLFKPFSKMS-ETLKLRGTLXGHNGWVTQIA 191
           +S R +VGH  R   L      PD    SS          ET +      GH G V  + 
Sbjct: 13  ASYRQLVGHCGRVTALSWSPHHPDRLVTSSYDGSAQVWDVETNQPIANYRGHVGRVMSVC 72

Query: 192 TNPKYPDMILSSSRDKTL 245
            +   PD++ S   D T+
Sbjct: 73  WSYLDPDVVFSGGEDGTV 90


>SB_51892| Best HMM Match : WD40 (HMM E-Value=8.7e-14)
          Length = 353

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 162 GHNGWVTQIATNPKYPDMILSSSRD 236
           GH G + Q+  NP YP+  L+ S D
Sbjct: 113 GHTGPIYQVKWNPLYPEAFLTCSAD 137


>SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +3

Query: 156 LXGHNGWVTQIATNPKYPDMILSSSRDKTLI 248
           L GH+  +  IA  P+ PD+++S ++D  ++
Sbjct: 257 LEGHSRGILSIAWCPQDPDLLMSCAKDNRIL 287


>SB_29857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1264

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 153 TLXGHNGWVTQIATNPKYPDMILSSSRDKTL 245
           +L GH GWV  +A +P     + S S D ++
Sbjct: 188 SLDGHKGWVWSLACDPMGESRLCSGSWDNSV 218


>SB_45041| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1278

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 298 GKGGLVFRSXGSSFSTAMRVL 236
           GKGG +F+S GS FS ++  L
Sbjct: 907 GKGGKMFKSVGSQFSVSLSKL 927


>SB_19094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 153 TLXGHNGWVTQIATNPKYPDMILSSSRDKTLIAVEKLDPXERK 281
           TL GH+ +V  +  +    D+ LS+SRD +++  +   P   K
Sbjct: 124 TLKGHSDFVLGVDCSGTEKDLFLSASRDGSVVLWDTRKPRPAK 166


>SB_42662| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1054

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +3

Query: 108  FKPFSKMSETLKLRGTLXGHNGWVTQIATNPKYPDMILSSSRDKTLI 248
            +K +  M  ++   GT+     +V + A  P+Y DM   +S +KT++
Sbjct: 1008 YKAYGGMGRSIAAAGTV-----YVEETARGPQYADMKYDTSTNKTIV 1049


>SB_25632| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 303

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
 Frame = +3

Query: 186 IATNPKYPDM------ILSSSRDKTLIAVEKLDPXERKTKP 290
           ++   +YPD+      +LS  R+KTLI V  L P    TKP
Sbjct: 85  LSLRKEYPDLNEKLLRLLSDWREKTLIQVRDLGPGGGWTKP 125


>SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6119

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 18/85 (21%), Positives = 33/85 (38%)
 Frame = +3

Query: 57  VLLTRATGPDASGXSSLFKPFSKMSETLKLRGTLXGHNGWVTQIATNPKYPDMILSSSRD 236
           V LT +         + +K    ++++LKL     G   WVT ++  P+   +    + +
Sbjct: 219 VTLTCSVSGKPKPSITWYKNGKLLTDSLKLDIRSSGERNWVTMLSAKPEDTALYKCEAEN 278

Query: 237 KTLIAVEKLDPXERKTKPPLPVITL 311
           K   A    D   +  K   P  T+
Sbjct: 279 KLGKASRAFDVKVKAPKGDAPSFTI 303


>SB_35849| Best HMM Match : Fibrinogen_C (HMM E-Value=0.15)
          Length = 631

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +3

Query: 84  DASGXSSLFKPFSKMSETLKLRGTLXGHNGW 176
           DA       KP   + +T    GTL G NGW
Sbjct: 118 DAKSDMYFIKPRDVVMKTYCYMGTLCGSNGW 148


>SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37)
          Length = 1632

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 17/62 (27%), Positives = 24/62 (38%)
 Frame = +3

Query: 117  FSKMSETLKLRGTLXGHNGWVTQIATNPKYPDMILSSSRDKTLIAVEKLDPXERKTKPPL 296
            + K S   K+  +L       T IAT+    +    S +       E LDP    T  PL
Sbjct: 1042 YFKSSSCTKILSSLMQRETMTTGIATSTMATNPAADSQQQPIKCMAENLDPSSNNT--PL 1099

Query: 297  PV 302
            P+
Sbjct: 1100 PI 1101


>SB_54574| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 1050

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 129 SETLKLRGTLXGHNGWVTQIATNPKYPDMILSSSRDKTL 245
           S+T    G   GH GW   +  + K    ++S S D+T+
Sbjct: 747 SKTFARLGVYKGHKGWAHSVGIS-KDSSKLVSGSEDETV 784


>SB_46028| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +3

Query: 84  DASGXSSLFKPFSKMSETLKLRGTLXGHNGW 176
           DA       KP   + +T    GTL G NGW
Sbjct: 98  DAKSGMYFIKPRDVVMKTYCYMGTLCGSNGW 128


>SB_46027| Best HMM Match : Fibrinogen_C (HMM E-Value=0.24)
          Length = 901

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +3

Query: 84  DASGXSSLFKPFSKMSETLKLRGTLXGHNGW 176
           DA       KP   + +T    GTL G NGW
Sbjct: 143 DAKSGMYFIKPRDVVMKTYCYMGTLCGSNGW 173


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,038,066
Number of Sequences: 59808
Number of extensions: 170907
Number of successful extensions: 346
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 485763447
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)