Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_K01
(338 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69664-1|CAA93514.1| 325|Caenorhabditis elegans Hypothetical pr... 50 4e-07
AL032627-14|CAA21549.1| 386|Caenorhabditis elegans Hypothetical... 33 0.040
AC024770-5|AAK84605.2| 684|Caenorhabditis elegans Hypothetical ... 33 0.052
Z68342-4|CAA92776.1| 1000|Caenorhabditis elegans Hypothetical pr... 30 0.49
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 28 1.5
U80447-5|AAB37809.1| 439|Caenorhabditis elegans Temporarily ass... 28 2.0
U28991-8|AAM22060.1| 517|Caenorhabditis elegans Hypothetical pr... 27 2.6
U28991-7|AAK68312.1| 626|Caenorhabditis elegans Hypothetical pr... 27 2.6
U28991-6|AAK68313.1| 624|Caenorhabditis elegans Hypothetical pr... 27 2.6
Z81113-5|CAB03282.3| 404|Caenorhabditis elegans Hypothetical pr... 26 6.0
Z46937-1|CAA87056.2| 1036|Caenorhabditis elegans Hypothetical pr... 26 6.0
U41013-3|AAA82302.1| 433|Caenorhabditis elegans Protein kinase ... 26 6.0
AL132904-13|CAC35846.4| 778|Caenorhabditis elegans Hypothetical... 26 6.0
AF164430-1|AAF82632.1| 404|Caenorhabditis elegans LIS-1 protein. 26 6.0
Z81097-15|CAB03172.1| 412|Caenorhabditis elegans Hypothetical p... 26 7.9
>Z69664-1|CAA93514.1| 325|Caenorhabditis elegans Hypothetical
protein K04D7.1 protein.
Length = 325
Score = 50.0 bits (114), Expect = 4e-07
Identities = 24/42 (57%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Frame = +3
Query: 126 MSETLKLRGTLXGHNGWVTQIATNPKY-PDMILSSSRDKTLI 248
+ E +KL GTL GH GWVTQIAT + +LSSSRDKT++
Sbjct: 2 VQEQMKLTGTLEGHTGWVTQIATYTRNDKTTVLSSSRDKTIL 43
>AL032627-14|CAA21549.1| 386|Caenorhabditis elegans Hypothetical
protein Y41C4A.11 protein.
Length = 386
Score = 33.5 bits (73), Expect = 0.040
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +3
Query: 165 HNGWVTQIATNPKYPDMILSSSRDKTL 245
H ++ QIA NP+ P+M +S S DKTL
Sbjct: 233 HAHYIMQIAVNPEDPEMFVSGSLDKTL 259
>AC024770-5|AAK84605.2| 684|Caenorhabditis elegans Hypothetical
protein Y39H10A.6 protein.
Length = 684
Score = 33.1 bits (72), Expect = 0.052
Identities = 19/43 (44%), Positives = 23/43 (53%)
Frame = +3
Query: 147 RGTLXGHNGWVTQIATNPKYPDMILSSSRDKTLIAVEKLDPXE 275
R +L GH G V +A NP P M++S D T I V LD E
Sbjct: 558 RYSLVGHRGHVNAVAWNPADPTMLVSCGADAT-IRVWSLDRSE 599
>Z68342-4|CAA92776.1| 1000|Caenorhabditis elegans Hypothetical
protein F38E11.5 protein.
Length = 1000
Score = 29.9 bits (64), Expect = 0.49
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 144 LRGTLXGHNGWVTQIATNPKYPDMILSSSRDKTL 245
++ + GH +V QIA NPK + ++S DKT+
Sbjct: 134 MKQSFEGHTHYVMQIAINPKDNNTFATASLDKTV 167
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 7/40 (17%)
Frame = +3
Query: 219 LSSSRDKTLIAVEKLDPXERKTKP-------PLPVITLQK 317
+S S +K+ + V DP E KTKP P+PVI K
Sbjct: 598 MSISAEKSTVTVFSCDPKEHKTKPDIYWMDDPIPVINAPK 637
>U80447-5|AAB37809.1| 439|Caenorhabditis elegans Temporarily
assigned gene nameprotein 345 protein.
Length = 439
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 144 LRGTLXGH-NGWVTQIATNPKYPDMILSSSRDKT 242
++ + GH NGWV + NP + +S S DKT
Sbjct: 358 VKQSFIGHQNGWVEAVKWNPLDTNQFVSVSTDKT 391
>U28991-8|AAM22060.1| 517|Caenorhabditis elegans Hypothetical
protein F08F8.9c protein.
Length = 517
Score = 27.5 bits (58), Expect = 2.6
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +3
Query: 198 PKYPDMILSSSRDKTLIAVEKLDPXERKTKPPLPVITLQKSR 323
PK P +S + + + EK P ERK KPP P QK +
Sbjct: 28 PKKPKETDGNSTETVVNSTEK--PEERKEKPPKPPKQKQKQK 67
>U28991-7|AAK68312.1| 626|Caenorhabditis elegans Hypothetical
protein F08F8.9a protein.
Length = 626
Score = 27.5 bits (58), Expect = 2.6
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +3
Query: 198 PKYPDMILSSSRDKTLIAVEKLDPXERKTKPPLPVITLQKSR 323
PK P +S + + + EK P ERK KPP P QK +
Sbjct: 28 PKKPKETDGNSTETVVNSTEK--PEERKEKPPKPPKQKQKQK 67
>U28991-6|AAK68313.1| 624|Caenorhabditis elegans Hypothetical
protein F08F8.9b protein.
Length = 624
Score = 27.5 bits (58), Expect = 2.6
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +3
Query: 198 PKYPDMILSSSRDKTLIAVEKLDPXERKTKPPLPVITLQKSR 323
PK P +S + + + EK P ERK KPP P QK +
Sbjct: 28 PKKPKETDGNSTETVVNSTEK--PEERKEKPPKPPKQKQKQK 67
>Z81113-5|CAB03282.3| 404|Caenorhabditis elegans Hypothetical
protein T03F6.5 protein.
Length = 404
Score = 26.2 bits (55), Expect = 6.0
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 153 TLXGHNGWVTQIATNPKYPDMILSSSRDKTL 245
TL H WV +A +PK ++S + DKTL
Sbjct: 327 TLLAHENWVRGLAFHPK-GKYLISVADDKTL 356
>Z46937-1|CAA87056.2| 1036|Caenorhabditis elegans Hypothetical protein
F43C1.1 protein.
Length = 1036
Score = 26.2 bits (55), Expect = 6.0
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +3
Query: 168 NGWVTQIATNPKYPDMILSSSRDKTLIAVEKLDPXERKTKPPLP 299
NG+ T N PD+ + ++ ++AV L E PP+P
Sbjct: 905 NGFSTSSTKNQVTPDIAIPKIDEQLVLAVPALILPEYHPSPPVP 948
>U41013-3|AAA82302.1| 433|Caenorhabditis elegans Protein kinase
protein 26 protein.
Length = 433
Score = 26.2 bits (55), Expect = 6.0
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +3
Query: 168 NGWVTQIATNPKYPDMILSSSRDKTLIAVEKLD 266
NG V QI N K P L+ KT+I EK D
Sbjct: 279 NGTVYQIKPNTKSPIRWLAIETIKTMICSEKTD 311
>AL132904-13|CAC35846.4| 778|Caenorhabditis elegans Hypothetical
protein Y111B2A.17 protein.
Length = 778
Score = 26.2 bits (55), Expect = 6.0
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 147 RGTLXGHNGWVTQIATNPKYPDMILSSSRDKT 242
+ + GH VTQIA NP +L+ SRD+T
Sbjct: 601 KSEIIGHQLTVTQIAWNPS-GTRLLTVSRDRT 631
Score = 25.8 bits (54), Expect = 7.9
Identities = 9/39 (23%), Positives = 21/39 (53%)
Frame = +3
Query: 153 TLXGHNGWVTQIATNPKYPDMILSSSRDKTLIAVEKLDP 269
++ GH W+ IA N ++++S+ T + + ++P
Sbjct: 202 SVAGHTDWIHSIAFNDNPDHLLVASAGQDTYVRLWAIEP 240
>AF164430-1|AAF82632.1| 404|Caenorhabditis elegans LIS-1 protein.
Length = 404
Score = 26.2 bits (55), Expect = 6.0
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 153 TLXGHNGWVTQIATNPKYPDMILSSSRDKTL 245
TL H WV +A +PK ++S + DKTL
Sbjct: 327 TLLAHENWVRGLAFHPK-GKYLISVADDKTL 356
>Z81097-15|CAB03172.1| 412|Caenorhabditis elegans Hypothetical
protein K07A1.11 protein.
Length = 412
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 153 TLXGHNGWVTQIATNPKYPDMILSSSRDKTLI 248
TL HN + Q++ +P Y ++ SS D +I
Sbjct: 303 TLKHHNDEIFQVSFSPHYETVLASSGSDDRVI 334
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,315,358
Number of Sequences: 27780
Number of extensions: 126733
Number of successful extensions: 281
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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