Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_K01
(338 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g48630.1 68414.m05440 guanine nucleotide-binding family prote... 41 2e-04
At1g18080.1 68414.m02238 WD-40 repeat family protein / auxin-dep... 41 2e-04
At3g18130.1 68416.m02305 guanine nucleotide-binding family prote... 36 0.005
At4g35370.1 68417.m05025 transducin family protein / WD-40 repea... 33 0.064
At3g27640.1 68416.m03452 transducin family protein / WD-40 repea... 32 0.085
At3g20740.1 68416.m02624 fertilization-independent endosperm pro... 32 0.085
At5g43920.1 68418.m05372 transducin family protein / WD-40 repea... 30 0.45
At3g54640.1 68416.m06045 tryptophan synthase, alpha subunit (TSA... 30 0.45
At1g76260.1 68414.m08855 transducin family protein / WD-40 repea... 30 0.45
At1g20540.1 68414.m02559 transducin family protein / WD-40 repea... 30 0.45
At5g56130.1 68418.m07002 transducin family protein / WD-40 repea... 29 0.79
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 28 1.8
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 28 1.8
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 28 1.8
At1g79990.1 68414.m09356 coatomer protein complex, subunit beta ... 28 1.8
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 28 1.8
At4g13740.1 68417.m02133 expressed protein 27 3.2
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 27 3.2
At4g18900.1 68417.m02786 transducin family protein / WD-40 repea... 27 4.2
At5g16750.1 68418.m01961 transducin family protein / WD-40 repea... 26 5.6
At4g32990.1 68417.m04692 transducin family protein / WD-40 repea... 26 5.6
At4g28450.1 68417.m04071 transducin family protein / WD-40 repea... 26 5.6
At5g65570.1 68418.m08250 pentatricopeptide (PPR) repeat-containi... 25 9.7
At5g11490.1 68418.m01341 adaptin family protein similar to SP|Q9... 25 9.7
At4g29830.1 68417.m04246 transducin family protein / WD-40 repea... 25 9.7
At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic regul... 25 9.7
>At1g48630.1 68414.m05440 guanine nucleotide-binding family protein
/ activated protein kinase C receptor, putative / RACK,
putative contains 7 WD-40 repeats (PF00400); very
similar to guanine nucleotide-binding protein; activated
protein kinase C receptor; RACK1 (GI:9294068)
{Arabidopsis thaliana}; similar to WD-40 repeat
auxin-dependent protein ARCA (SP:O24456) [Arabidopsis
thaliana];
Length = 326
Score = 41.1 bits (92), Expect = 2e-04
Identities = 20/41 (48%), Positives = 28/41 (68%)
Frame = +3
Query: 126 MSETLKLRGTLXGHNGWVTQIATNPKYPDMILSSSRDKTLI 248
M+E L L+GT+ H VT IAT D+I++SSRDK++I
Sbjct: 1 MAEGLVLKGTMCAHTDMVTAIATPVDNSDVIVTSSRDKSII 41
Score = 28.7 bits (61), Expect = 1.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 132 ETLKLRGTLXGHNGWVTQIATNP 200
+ KLR TL GH+G++ +A +P
Sbjct: 181 QNCKLRNTLAGHSGYLNTVAVSP 203
>At1g18080.1 68414.m02238 WD-40 repeat family protein /
auxin-dependent protein (ARCA) / guanine
nucleotide-binding protein beta subunit, putative
identical to SP|O24456 Guanine nucleotide-binding
protein beta subunit-like protein (WD-40 repeat
auxin-dependent protein ARCA) {Arabidopsis thaliana};
contains 7 WD-40 repeats (PF00400)
Length = 327
Score = 40.7 bits (91), Expect = 2e-04
Identities = 20/41 (48%), Positives = 28/41 (68%)
Frame = +3
Query: 126 MSETLKLRGTLXGHNGWVTQIATNPKYPDMILSSSRDKTLI 248
M+E L L+GT+ H VT IAT D+I+S+SRDK++I
Sbjct: 1 MAEGLVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSII 41
Score = 29.5 bits (63), Expect = 0.60
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 141 KLRGTLXGHNGWVTQIATNP 200
KLR TL GH G+V+ +A +P
Sbjct: 185 KLRSTLAGHTGYVSTVAVSP 204
>At3g18130.1 68416.m02305 guanine nucleotide-binding family protein
/ activated protein kinase C receptor (RACK1) identical
to guanine nucleotide-binding protein; activated protein
kinase C receptor; RACK1 (GI:9294068) {Arabidopsis
thaliana}; contains Pfam profile: PF00400 WD domain,
G-beta repeat (7 copies)
Length = 326
Score = 36.3 bits (80), Expect = 0.005
Identities = 18/41 (43%), Positives = 27/41 (65%)
Frame = +3
Query: 126 MSETLKLRGTLXGHNGWVTQIATNPKYPDMILSSSRDKTLI 248
M+E L L+G + H VT IAT D+I+++SRDK++I
Sbjct: 1 MAEGLVLKGIMRAHTDIVTAIATPIDNSDIIVTASRDKSII 41
Score = 27.1 bits (57), Expect = 3.2
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 132 ETLKLRGTLXGHNGWVTQIATNP 200
+ KLR +L GH+G++ +A +P
Sbjct: 181 QNCKLRNSLVGHSGYLNTVAVSP 203
>At4g35370.1 68417.m05025 transducin family protein / WD-40 repeat
family protein contains 4 (3 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 414
Score = 32.7 bits (71), Expect = 0.064
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +3
Query: 135 TLKLRGTLXGHNGWVTQIATNPKYPDMILSSSRDKTLIAVEKLDP 269
T K + T+ H V +A N P+++LS SRD+T++ + DP
Sbjct: 246 TGKCKVTMEHHEKKVHAVAWNNYTPEVLLSGSRDRTVVLKDGRDP 290
>At3g27640.1 68416.m03452 transducin family protein / WD-40 repeat
family protein contains seven WD-40 G-protein beta
repeats; similar to RA-regulated nuclear
matrix-associated protein (GI:14161320) {Homo sapiens}
Length = 535
Score = 32.3 bits (70), Expect = 0.085
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 132 ETLKLRGTLXGHNGWVTQIATNPKYPDMILSSSRD 236
E K G L GH G V + ++P D+++S SRD
Sbjct: 158 EENKCTGVLIGHTGTVKSMCSHPTNSDLLVSGSRD 192
>At3g20740.1 68416.m02624 fertilization-independent endosperm
protein (FIE) contains 6 WD-40 repeats (PF00400);
identical to fertilization-independent endosperm protein
(GI:4567095) [Arabidopsis thaliana]
Length = 369
Score = 32.3 bits (70), Expect = 0.085
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +3
Query: 87 ASGXSSLFKPFSKMSETLKLRGTLXGHNGWVTQIATNPKYPDMILSSSRDKTL 245
A G + + SET+ +L GH V +I T P P +++++S+D+++
Sbjct: 103 AGGVKGIIRVIDVNSETI--HKSLVGHGDSVNEIRTQPLKPQLVITASKDESV 153
>At5g43920.1 68418.m05372 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 523
Score = 29.9 bits (64), Expect = 0.45
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 156 LXGHNGWVTQIATNPKYPDMILSSSRDKTL 245
L GH+ V ++ NPK P M+ S+S D+T+
Sbjct: 481 LSGHSMTVNCVSWNPKNPRMLASASDDQTI 510
>At3g54640.1 68416.m06045 tryptophan synthase, alpha subunit (TSA1)
identical to gi:619753
Length = 312
Score = 29.9 bits (64), Expect = 0.45
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = -2
Query: 133 SDIFENGLKSDDXPEASGPVARVKRTRNLR*WPTIDRELEM 11
SDI E G+ D P A GPV + TR+L +D LEM
Sbjct: 92 SDIIELGVPYSD-PLADGPVIQAAATRSLERGTNLDSILEM 131
>At1g76260.1 68414.m08855 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to retinoblastoma A associated protein; RbAp48
(GI:3309245) [Xenopus laevis]
Length = 350
Score = 29.9 bits (64), Expect = 0.45
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 156 LXGHNGWVTQIATNPKYPDMILSSSRDKTL 245
L GH W + NP+Y ++ILS D +
Sbjct: 248 LPGHTHWTWAVRCNPEYEELILSVGTDSAV 277
>At1g20540.1 68414.m02559 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Rbap46 polypeptide (GI:9454362) [Gallus
gallus]
Length = 351
Score = 29.9 bits (64), Expect = 0.45
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 156 LXGHNGWVTQIATNPKYPDMILSSSRDKTL 245
L GH W + NP+Y +ILS+ D +
Sbjct: 248 LPGHTHWTWAVRCNPEYDGLILSAGTDSVV 277
>At5g56130.1 68418.m07002 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to beta transducin-like protein HET-E2C*4
(GI:17225206) [Podospora anserina]
Length = 315
Score = 29.1 bits (62), Expect = 0.79
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 156 LXGHNGWVTQIATNPKYPDMILSSSRDKTL 245
L GH V Q+ +PK+ D++ ++S DK++
Sbjct: 62 LKGHTDSVDQLCWDPKHSDLVATASGDKSV 91
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 162 GHNGWVTQIATNPKYPDMILSSSRDKTL 245
GH+ +V Q+ NPK + S+S D+T+
Sbjct: 140 GHSHYVMQVVFNPKDTNTFASASLDRTI 167
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 162 GHNGWVTQIATNPKYPDMILSSSRDKTL 245
GH+ +V Q+ NPK + S+S D+T+
Sbjct: 140 GHSHYVMQVVFNPKDTNTFASASLDRTI 167
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 162 GHNGWVTQIATNPKYPDMILSSSRDKTL 245
GH+ +V Q+ NPK + S+S D+T+
Sbjct: 140 GHSHYVMQVVFNPKDTNTFASASLDRTI 167
>At1g79990.1 68414.m09356 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606)
[Homo sapiens]; similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:O55029) [Mus
musculus]
Length = 920
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 162 GHNGWVTQIATNPKYPDMILSSSRDKTL 245
GH+ +V Q+ NPK + S+S D+T+
Sbjct: 140 GHSHYVMQVTFNPKDTNTFASASLDRTI 167
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 162 GHNGWVTQIATNPKYPDMILSSSRDKTL 245
GH+ +V Q+ NPK + S+S D+T+
Sbjct: 140 GHSHYVMQVTFNPKDTNTFASASLDRTI 167
>At4g13740.1 68417.m02133 expressed protein
Length = 605
Score = 27.1 bits (57), Expect = 3.2
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +2
Query: 146 PRNSXRPQWLGYSNCN*SEIPGHDLIFLSRQNSHRCGKA*PXRTKNQTPFTGYYPPK 316
P N RP + +S N + P +L FL +Q H+ G A +N + +PP+
Sbjct: 59 PANFYRPNFPDFSLGNPNFQPHQNLNFLHQQIPHQYGSAANHFLQNHNQNSFSFPPQ 115
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 310 RVITGKGGLVFRSXGSSFSTAMRVLSREEDK 218
RV+ GK LVFR+ S REE+K
Sbjct: 126 RVVKGKRKLVFRNRACELSEKAEASDREEEK 156
>At4g18900.1 68417.m02786 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 461
Score = 26.6 bits (56), Expect = 4.2
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = +3
Query: 153 TLXGHNGWVTQIATNPKYPDMILSSSRDKTL 245
T+ GH+ T ++ N P+++ + S+D+T+
Sbjct: 364 TINGHDEAATSVSYNISAPNLLATGSKDRTV 394
>At5g16750.1 68418.m01961 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats (PF00400);
similar to transducin homolog sazD - Homo sapiens,
EMBL:U02609
Length = 876
Score = 26.2 bits (55), Expect = 5.6
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +3
Query: 150 GTLXGHNGWVTQIATNPKYPDMILSSSRDKTLIAVEKLDPXERKTKPPLPVIT 308
G GHNG + +A K +S S D+TL V LD ++ P+ + T
Sbjct: 440 GVGTGHNGDILAVAFAKKSFSFFVSGSGDRTL-KVWSLDGISEDSEEPINLKT 491
>At4g32990.1 68417.m04692 transducin family protein / WD-40 repeat
family protein HIRA protein, Drosophila melanogaster,
PID:e1250847
Length = 318
Score = 26.2 bits (55), Expect = 5.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 156 LXGHNGWVTQIATNPKYPDMILSSSRDKTL 245
L GH V +A NP +I S S DKT+
Sbjct: 16 LEGHTDRVWNVAWNPAADGVIASCSADKTV 45
>At4g28450.1 68417.m04071 transducin family protein / WD-40 repeat
family protein SOF1 (involved in rRNA processing)
protein-yeast
Length = 442
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 150 GTLXGHNGWVTQIATNPKYPDMILSSSRD 236
G + GH V+ +A NP Y I S+S D
Sbjct: 50 GAMDGHRDGVSCMAKNPNYLKGIFSASMD 78
>At5g65570.1 68418.m08250 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 738
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 51 FRVLLTRATGPDASGXSSLFKPFSKMS 131
+R+++T PD SS+FK FS +S
Sbjct: 153 YRLMITNNVLPDEYTLSSVFKAFSDLS 179
>At5g11490.1 68418.m01341 adaptin family protein similar to
SP|Q9WV76 Adapter-related protein complex 4 beta 1
subunit (Beta subunit of AP- 4) {Mus musculus},
beta-adaptin Drosophila 1 {Drosophila melanogaster}
GI:434902; contains Pfam profile: PF01602 Adaptin N
terminal region
Length = 841
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -2
Query: 181 VTQPLWPXRVPRSFNVSDIFENGLKSDDXPEASGPVARV 65
++ P P+SF D+F GL + P S P+ ++
Sbjct: 683 ISGPATSATTPQSFGFDDLFGLGLSTAPAPTPSPPLLKL 721
>At4g29830.1 68417.m04246 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400); G
protein beta subunit-like protein, Schistosoma mansoni,
gb:U30261
Length = 321
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 129 SETLKLRGTLXGHNGWVTQIATNPKYPDMILSSSRDKTL 245
+E L G++ GH WV + +P I + S D+T+
Sbjct: 230 AEGKTLLGSMSGHTSWVLSVDASPD-GGAIATGSSDRTV 267
>At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic
regulator 2 (PRL2) identical to SP|Q39190 PP1/PP2A
phosphatases pleiotropic regulator PRL2 {Arabidopsis
thaliana}, GB:Q39190 from [Arabidopsis thaliana];
contains Pfam PF00400: WD domain, G-beta repeat (7
copies, 1 weak)
Length = 479
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 156 LXGHNGWVTQIATNPKYPDMILSSSRDKTL 245
L GH GWV +A +P + + S D+T+
Sbjct: 166 LQGHLGWVRSVAFDPS-NEWFCTGSADRTI 194
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,048,164
Number of Sequences: 28952
Number of extensions: 122577
Number of successful extensions: 320
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 399440640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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